CU088343 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU088343
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Glucose-induced degradation protein 8-like
Location	Chr1 : 7371293 .. 7372039 (-)
Sequence length	400

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CGGCCGGGGACTCCGAGCTAGTCTTAAAGTAATCTTGATTCATAGGATACGTTATCCTCCGAAGATTTCTTCTAGGTGAGTTTGCGGATTTGCTTGTGTATAACCGATGGGTTTGAGGGCGGTGTACTGATGTCATTGTTCTGGATTGTGATTCGTCAATTTGCAGAGAACGTAAGCGATGGCCGCGTCAATGAAAGTCATTACAAGGGAAGAGTGGGAGAAGAAGCTTAACGACGTAAAGATTAGGAAAGAAGACATGAATAAATTGGTAATGAATTTCCTCGTCACTGAAGGTTATGTTGATGCAGCCGAGAAATTCCGGATGGAGTCTGGGGACTAGAAGAACCAAAGAAAAATAAAGAAATAACTTAGACAACCATAACAGATAGAATGGCCGTTA

Library


Library category	ESTs
fruit (8DPP) library	1
gynoecious flower library	1

Homology

[Close]

BLAST of CU088343 vs. Swiss-Prot
Match: GID8_DANRE (Glucose-induced degradation protein 8 homolog OS=Danio rerio GN=gid8 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.1e-11
Identity = 31/45 (68.89%), Postives = 38/45 (84.44%), Query Frame = 2


Query: 200 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESG 259
           IT+EEW  KLN+V I++ DMN+L+MN+LVTEG+ +AAEKFRMESG
Sbjct: 10  ITKEEWMDKLNNVHIQRADMNRLIMNYLVTEGFKEAAEKFRMESG 54

Query: 260  319
           
Sbjct: 70   54

Query: 320  335
           
Sbjct: 130  54

[Close]

BLAST of CU088343 vs. Swiss-Prot
Match: GID8_CHICK (Glucose-induced degradation protein 8 homolog OS=Gallus gallus GN=GID8 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.1e-11
Identity = 29/45 (64.44%), Postives = 39/45 (86.67%), Query Frame = 2


Query: 200 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESG 259
           IT++EW +KLN++ I++ DMN+L+MN+LVTEG+ +AAEKFRMESG
Sbjct: 10  ITKDEWMEKLNNLHIQRADMNRLIMNYLVTEGFKEAAEKFRMESG 54

Query: 260  319
           
Sbjct: 70   54

Query: 320  335
           
Sbjct: 130  54

[Close]

BLAST of CU088343 vs. Swiss-Prot
Match: GID8_BOVIN (Glucose-induced degradation protein 8 homolog OS=Bos taurus GN=GID8 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.9e-11
Identity = 28/45 (62.22%), Postives = 39/45 (86.67%), Query Frame = 2


Query: 200 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESG 259
           IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG
Sbjct: 10  ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESG 54

Query: 260  319
           
Sbjct: 70   54

Query: 320  335
           
Sbjct: 130  54

[Close]

BLAST of CU088343 vs. Swiss-Prot
Match: GID8_HUMAN (Glucose-induced degradation protein 8 homolog OS=Homo sapiens GN=GID8 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.9e-11
Identity = 28/45 (62.22%), Postives = 39/45 (86.67%), Query Frame = 2


Query: 200 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESG 259
           IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG
Sbjct: 10  ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESG 54

Query: 260  319
           
Sbjct: 70   54

Query: 320  335
           
Sbjct: 130  54

[Close]

BLAST of CU088343 vs. Swiss-Prot
Match: GID8_MOUSE (Glucose-induced degradation protein 8 homolog OS=Mus musculus GN=Gid8 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.9e-11
Identity = 28/45 (62.22%), Postives = 39/45 (86.67%), Query Frame = 2


Query: 200 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESG 259
           IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG
Sbjct: 10  ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESG 54

Query: 260  319
           
Sbjct: 70   54

Query: 320  335
           
Sbjct: 130  54

[Close]

BLAST of CU088343 vs. TrEMBL
Match: A0A0A0LV19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G073020 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.5e-19
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 2


Query: 176 AMAASMKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESG 235
           AMA S KVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESG
Sbjct: 16  AMATSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESG 68

Query: 236  295
           
Sbjct: 76   68

Query: 296  335
           
Sbjct: 136  68

[Close]

BLAST of CU088343 vs. TrEMBL
Match: A0A0A0LV19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G073020 PE=4 SV=1)

HSP 1 Score: 32.7 bits (73), Expect = 4.1e+02
Identity = 14/14 (100.00%), Postives = 14/14 (100.00%), Query Frame = 1


Query: 130 MSLFWIVIRQFAEN 172
           MSLFWIVIRQFAEN
Sbjct: 1   MSLFWIVIRQFAEN 14

HSP 2 Score: 102.8 bits (255), Expect = 3.2e-19
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 2


Query: 176 AMAASMKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESG 235
           AMA S KVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESG
Sbjct: 16  AMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESG 68

Query: 236  295
           
Sbjct: 76   68

Query: 296  335
           
Sbjct: 136  68

[Close]

BLAST of CU088343 vs. TrEMBL
Match: A0A067GKH7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026151mg PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.2e-19
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 2


Query: 176 AMAASMKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESG 235
           AMA S KVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESG
Sbjct: 16  AMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESG 68

Query: 236  295
           
Sbjct: 76   68

Query: 296  335
           
Sbjct: 136  68

[Close]

BLAST of CU088343 vs. TrEMBL
Match: A0A067GKH3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026151mg PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.2e-19
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 2


Query: 176 AMAASMKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESG 235
           AMA S KVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESG
Sbjct: 16  AMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESG 68

Query: 236  295
           
Sbjct: 76   68

Query: 296  335
           
Sbjct: 136  68

[Close]

BLAST of CU088343 vs. TrEMBL
Match: V4TPR8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016453mg PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.2e-19
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 2


Query: 176 AMAASMKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESG 235
           AMA S KVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESG
Sbjct: 16  AMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESG 68

Query: 236  295
           
Sbjct: 76   68

Query: 296  335
           
Sbjct: 136  68

[Close]

BLAST of CU088343 vs. NCBI nr
Match: gi|449457706|ref|XP_004146589.1| (PREDICTED: glucose-induced degradation protein 8 homolog [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 2.1e-19
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 2


Query: 176 AMAASMKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESG 235
           AMA S KVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESG
Sbjct: 16  AMATSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESG 68

Query: 236  295
           
Sbjct: 76   68

Query: 296  335
           
Sbjct: 136  68

[Close]

BLAST of CU088343 vs. NCBI nr
Match: gi|802783197|ref|XP_012091544.1| (PREDICTED: glucose-induced degradation protein 8 homolog isoform X2 [Jatropha curcas])

HSP 1 Score: 104.0 bits (258), Expect = 2.1e-19
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 2


Query: 176 AMAASMKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESG 235
           AMA S KVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESG
Sbjct: 16  AMATSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESG 68

Query: 236  295
           
Sbjct: 76   68

Query: 296  335
           
Sbjct: 136  68

[Close]

BLAST of CU088343 vs. NCBI nr
Match: gi|743899901|ref|XP_011043244.1| (PREDICTED: glucose-induced degradation protein 8 homolog [Populus euphratica])

HSP 1 Score: 104.0 bits (258), Expect = 2.1e-19
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 2


Query: 176 AMAASMKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESG 235
           AMAAS KVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKF+MESG
Sbjct: 17  AMAASKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFQMESG 69

Query: 236  295
           
Sbjct: 77   69

Query: 296  335
           
Sbjct: 137  69

[Close]

BLAST of CU088343 vs. NCBI nr
Match: gi|659067987|ref|XP_008442205.1| (PREDICTED: glucose-induced degradation protein 8 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 104.0 bits (258), Expect = 2.1e-19
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 2


Query: 176 AMAASMKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESG 235
           AMA S KVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESG
Sbjct: 14  AMATSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESG 66

Query: 236  295
           
Sbjct: 74   66

Query: 296  335
           
Sbjct: 134  66

[Close]

BLAST of CU088343 vs. NCBI nr
Match: gi|802783193|ref|XP_012091543.1| (PREDICTED: glucose-induced degradation protein 8 homolog isoform X1 [Jatropha curcas])

HSP 1 Score: 104.0 bits (258), Expect = 2.1e-19
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 2


Query: 176 AMAASMKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESG 235
           AMA S KVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESG
Sbjct: 16  AMATSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESG 68

Query: 236  295
           
Sbjct: 76   68

Query: 296  335
           
Sbjct: 136  68

The following BLAST results are available for this feature:

BLAST of CU088343 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GID8_DANRE	2.1e-11	68.89	Glucose-induced degradation protein 8 homolog OS=Danio rerio GN=gid8 PE=2 SV=1	[more]
GID8_CHICK	6.1e-11	64.44	Glucose-induced degradation protein 8 homolog OS=Gallus gallus GN=GID8 PE=2 SV=1	[more]
GID8_BOVIN	7.9e-11	62.22	Glucose-induced degradation protein 8 homolog OS=Bos taurus GN=GID8 PE=2 SV=1	[more]
GID8_HUMAN	7.9e-11	62.22	Glucose-induced degradation protein 8 homolog OS=Homo sapiens GN=GID8 PE=1 SV=1	[more]
GID8_MOUSE	7.9e-11	62.22	Glucose-induced degradation protein 8 homolog OS=Mus musculus GN=Gid8 PE=1 SV=1	[more]

BLAST of CU088343 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV19_CUCSA	2.5e-19	96.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G073020 PE=4 SV=1	[more]
A0A0A0LV19_CUCSA	4.1e+02	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G073020 PE=4 SV=1	[more]
A0A067GKH7_CITSI	3.2e-19	96.23	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026151mg PE=4 SV=1	[more]
A0A067GKH3_CITSI	3.2e-19	96.23	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026151mg PE=4 SV=1	[more]
V4TPR8_9ROSI	3.2e-19	96.23	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016453mg PE=4 SV=1	[more]

BLAST of CU088343 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457706\|ref\|XP_004146589.1\|	2.1e-19	96.23	PREDICTED: glucose-induced degradation protein 8 homolog [Cucumis sativus]	[more]
gi\|802783197\|ref\|XP_012091544.1\|	2.1e-19	96.23	PREDICTED: glucose-induced degradation protein 8 homolog isoform X2 [Jatropha cu...	[more]
gi\|743899901\|ref\|XP_011043244.1\|	2.1e-19	96.23	PREDICTED: glucose-induced degradation protein 8 homolog [Populus euphratica]	[more]
gi\|659067987\|ref\|XP_008442205.1\|	2.1e-19	96.23	PREDICTED: glucose-induced degradation protein 8 homolog isoform X2 [Cucumis mel...	[more]
gi\|802783193\|ref\|XP_012091543.1\|	2.1e-19	96.23	PREDICTED: glucose-induced degradation protein 8 homolog isoform X1 [Jatropha cu...	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR006594	LisH

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G073020	Csa1G073020	gene
Csa1G073030	Csa1G073030	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02OT8ZW	FKNP3UI02OT8ZW	EST
G0152023	G0152023	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006594	LIS1 homology motif	PFAM	PF08513	LisH	coord: 25..51 score: 4.5
IPR006594	LIS1 homology motif	SMART	SM00667	Lish	coord: 23..53 score: 0.
IPR006594	LIS1 homology motif	PROFILE	PS50896	LISH	coord: 23..52 score: 8
None	No IPR available	unknown	Coil	Coil	coord: 10..30 scor
None	No IPR available	PANTHER	PTHR12864	RAN BINDING PROTEIN 9-RELATED	coord: 1..52 score: 8.5