Csa1G073030 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G073030
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 7371696 .. 7372174 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCCAAATAGGACCTGTAAAGCCCAAAACCCGGATCCATTAACTCAAAGAGTTTCATTTCAACTCCCGACTGTCAAAGCTGAGGGATCGCCGGAACGCCATTTATTACTTCGATTCAAAGAATTGGCAATCCACTCCGAGCAGCAAAGAATCTTGATTCATAGGATACGTTATCCTCCGAAGGTACAATTTCTTGGTGACTCTTCTGGAAAAAAAAATGAGTTTGTCCGATTTGTTGTAAGTTTTCCACTGTTCTTTTTCCTTTGTCTCTCTAAATTAAGTAGAATTAGCCTCTAATTCCTTAATCAGATTTGTCCTCTGTCTTTCTACTTTTGTTGTTTTTCCGAAATTGGGAGCTTCAGATGTAGTATTTGAGAGTAACTTATAGATTTTCTCTTTTATCTACTGTTTGTGATGTTATCGATTTATGATCACACTTTTCTTTTCTTTTTTAATCTCAGATTTCTTCTAGGTGA

mRNA sequence

ATGGGCCCAAATAGGACCTGTAAAGCCCAAAACCCGGATCCATTAACTCAAAGAGTTTCATTTCAACTCCCGACTGTCAAAGCTGAGGGATCGCCGGAACGCCATTTATTACTTCGATTCAAAGAATTGGCAATCCACTCCGAGCAGCAAAGAATCTTGATTCATAGGATACGTTATCCTCCGAAGATTTCTTCTAGGTGA

Coding sequence (CDS)

ATGGGCCCAAATAGGACCTGTAAAGCCCAAAACCCGGATCCATTAACTCAAAGAGTTTCATTTCAACTCCCGACTGTCAAAGCTGAGGGATCGCCGGAACGCCATTTATTACTTCGATTCAAAGAATTGGCAATCCACTCCGAGCAGCAAAGAATCTTGATTCATAGGATACGTTATCCTCCGAAGATTTCTTCTAGGTGA

Protein sequence

MGPNRTCKAQNPDPLTQRVSFQLPTVKAEGSPERHLLLRFKELAIHSEQQRILIHRIRYPPKISSR*
Homology
[Close]
BLAST of Csa1G073030 vs. TrEMBL
Match: A0A0A0LS99_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G073030 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 7.8e-30
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1 

Query: 1  MGPNRTCKAQNPDPLTQRVSFQLPTVKAEGSPERHLLLRFKELAIHSEQQRILIHRIRYP 60
          MGPNRTCKAQNPDPLTQRVSFQLPTVKAEGSPERHLLLRFKELAIHSEQQRILIHRIRYP
Sbjct: 1  MGPNRTCKAQNPDPLTQRVSFQLPTVKAEGSPERHLLLRFKELAIHSEQQRILIHRIRYP 60

Query: 61 PKISSR 67
          PKISSR
Sbjct: 61 PKISSR 66

[Close]
BLAST of Csa1G073030 vs. NCBI nr
Match: gi|700209547|gb|KGN64643.1| (hypothetical protein Csa_1G073030 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 1.1e-29
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1 

Query: 1  MGPNRTCKAQNPDPLTQRVSFQLPTVKAEGSPERHLLLRFKELAIHSEQQRILIHRIRYP 60
          MGPNRTCKAQNPDPLTQRVSFQLPTVKAEGSPERHLLLRFKELAIHSEQQRILIHRIRYP
Sbjct: 1  MGPNRTCKAQNPDPLTQRVSFQLPTVKAEGSPERHLLLRFKELAIHSEQQRILIHRIRYP 60

Query: 61 PKISSR 67
          PKISSR
Sbjct: 61 PKISSR 66

The following BLAST results are available for this feature:
BLAST of Csa1G073030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LS99_CUCSA7.8e-30100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G073030 PE=4 SV=1[more]
BLAST of Csa1G073030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209547|gb|KGN64643.1|1.1e-29100.00hypothetical protein Csa_1G073030 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU088343cucumber EST collection version 3.0transcribed_cluster
CU094433cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G073030.1Csa1G073030.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU094433CU094433transcribed_cluster
CU088343CU088343transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G073030Cucurbita pepo (Zucchini)cpecuB057
Csa1G073030Cucurbita pepo (Zucchini)cpecuB203
Csa1G073030Cucurbita pepo (Zucchini)cpecuB474
Csa1G073030Cucurbita pepo (Zucchini)cpecuB506
Csa1G073030Cucurbita pepo (Zucchini)cpecuB770
Csa1G073030Bottle gourd (USVL1VR-Ls)culsiB019
Csa1G073030Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G073030Bottle gourd (USVL1VR-Ls)culsiB050
Csa1G073030Cucumber (Gy14) v2cgybcuB001
Csa1G073030Cucumber (Gy14) v2cgybcuB095
Csa1G073030Cucumber (Gy14) v2cgybcuB239
Csa1G073030Melon (DHL92) v3.6.1cumedB022
Csa1G073030Melon (DHL92) v3.6.1cumedB072
Csa1G073030Melon (DHL92) v3.6.1cumedB077
Csa1G073030Silver-seed gourdcarcuB0163
Csa1G073030Silver-seed gourdcarcuB0661
Csa1G073030Silver-seed gourdcarcuB0916
Csa1G073030Silver-seed gourdcarcuB0963
Csa1G073030Watermelon (97103) v2cuwmbB000
Csa1G073030Watermelon (97103) v2cuwmbB016
Csa1G073030Watermelon (97103) v2cuwmbB023
Csa1G073030Watermelon (97103) v2cuwmbB032
Csa1G073030Wax gourdcuwgoB023
Csa1G073030Wax gourdcuwgoB035
Csa1G073030Cucumber (Chinese Long) v2cucuB015
Csa1G073030Cucumber (Chinese Long) v2cucuB019
Csa1G073030Cucumber (Chinese Long) v2cucuB035
Csa1G073030Cucumber (Gy14) v1cgycuB070
Csa1G073030Cucumber (Gy14) v1cgycuB015
Csa1G073030Cucumber (Gy14) v1cgycuB170
Csa1G073030Cucurbita maxima (Rimu)cmacuB010
Csa1G073030Cucurbita maxima (Rimu)cmacuB218
Csa1G073030Cucurbita maxima (Rimu)cmacuB318
Csa1G073030Cucurbita maxima (Rimu)cmacuB391
Csa1G073030Cucurbita maxima (Rimu)cmacuB649
Csa1G073030Cucurbita maxima (Rimu)cmacuB848
Csa1G073030Cucurbita moschata (Rifu)cmocuB000
Csa1G073030Cucurbita moschata (Rifu)cmocuB203
Csa1G073030Cucurbita moschata (Rifu)cmocuB306
Csa1G073030Cucurbita moschata (Rifu)cmocuB380
Csa1G073030Cucurbita moschata (Rifu)cmocuB419
Csa1G073030Cucurbita moschata (Rifu)cmocuB637
Csa1G073030Melon (DHL92) v3.5.1cumeB027
Csa1G073030Melon (DHL92) v3.5.1cumeB077
Csa1G073030Melon (DHL92) v3.5.1cumeB083
Csa1G073030Watermelon (Charleston Gray)cuwcgB009
Csa1G073030Watermelon (Charleston Gray)cuwcgB012
Csa1G073030Watermelon (Charleston Gray)cuwcgB035
Csa1G073030Watermelon (97103) v1cuwmB008
Csa1G073030Watermelon (97103) v1cuwmB043
Csa1G073030Watermelon (97103) v1cuwmB075
Csa1G073030Cucurbita pepo (Zucchini)cpecuB029