CU087937 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU087937
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 6195493 .. 6195800 (-)
Sequence length	309

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GGCCCAGCTTTCCATCTTAGTCTACCCAACAACACTACTCTCAACCCTAAAACTCCAATTGTTTGATCCGTTACCAACCCATTTGCCACCTCCAACGACACTGCCACCGCCCCACCGCCTAGTACTGGAGAACAATCGCAACTGTGCTCCGCTTTTCGTGAGCCAGCGGAGGCAATATCACCTGCGACGTTATCTGCTGGTTCCTATACGACACAAAGACAGTCAGTCTGTCGTAATAAATGGAAACTCGCCTGTTGGGGTTCCTCGTAACGATTGTGAATTGCATGGTTGTAGACAGCAGCGGAAGAG

Library


Library category	ESTs
fruit (8DPP) library	1
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU087937 vs. Swiss-Prot
Match: NHL12_ARATH (NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana GN=NHL12 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-07
Identity = 25/45 (55.56%), Postives = 31/45 (68.89%), Query Frame = -3


Query: 167 LLSTTMQFTIVTRNPNRRVSIYYDRLTVFVSYRNQQITSQVILPP 226
           LL++  Q TI +RN N R+ IYYDRL V+ +YRNQQIT +  +PP
Sbjct: 67  LLTSNFQITIASRNRNSRIGIYYDRLHVYATYRNQQITLRTAIPP 111

Query: 227  286
           
Sbjct: 127  111

Query: 287  302
           
Sbjct: 187  111

[Close]

BLAST of CU087937 vs. TrEMBL
Match: A0A0A0L882_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116630 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 6.3e-23
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = -3


Query: 134 LPLLSTTMQFTIVTRNPNRRVSIYYDRLTVFVSYRNQQITSQVILPPLAHEKRSTVAI 193
           LPLLSTTMQFTIVTRNPNRRVSIYYDRLTVFVSYRNQQITSQVILPPLAHEKRSTVA+
Sbjct: 83  LPLLSTTMQFTIVTRNPNRRVSIYYDRLTVFVSYRNQQITSQVILPPLAHEKRSTVAM 140

Query: 194  253
           
Sbjct: 143  140

Query: 254  308
           
Sbjct: 203  140

[Close]

BLAST of CU087937 vs. TrEMBL
Match: A0A0A0L882_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116630 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.9e-05
Identity = 29/43 (67.44%), Postives = 29/43 (67.44%), Query Frame = -2


Query: 3   SPVLGGGAVAVSLEVANGLVTDQTIXXXXXXXXXXXXXXWKAG 62
           SPVLGGGAVAVSLEVANGLVTDQTI              WKAG
Sbjct: 141 SPVLGGGAVAVSLEVANGLVTDQTIGVLGLRVVLLGRLRWKAG 183

Query: 63   122
           
Sbjct: 201  183

Query: 123  132
           
Sbjct: 261  183

HSP 2 Score: 92.0 bits (227), Expect = 4.4e-16
Identity = 44/57 (77.19%), Postives = 48/57 (84.21%), Query Frame = -3


Query: 134 PLLSTTMQFTIVTRNPNRRVSIYYDRLTVFVSYRNQQITSQVILPPLAHEKRSTVAI 193
           PL+STTMQFT+VT NPNRRVSIYYDRL  FVSY+NQ IT QV LP L HE RSTVA+
Sbjct: 77  PLISTTMQFTLVTHNPNRRVSIYYDRLYAFVSYKNQAITPQVALPSLVHEHRSTVAV 133

Query: 194  253
           
Sbjct: 137  133

Query: 254  305
           
Sbjct: 197  133

[Close]

BLAST of CU087937 vs. TrEMBL
Match: M5X269_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011309mg PE=4 SV=1)

HSP 1 Score: 39.7 bits (91), Expect = 2.6e+00
Identity = 21/43 (48.84%), Postives = 22/43 (51.16%), Query Frame = -2


Query: 3   SPVLGGGAVAVSLEVANGLVTDQTIXXXXXXXXXXXXXXWKAG 62
           SPVLGG AV VSLEV NGL  D+                WKAG
Sbjct: 134 SPVLGGRAVPVSLEVVNGLTMDEAYGVVGLRVVVMGRLRWKAG 176

Query: 63   122
           
Sbjct: 194  176

Query: 123  132
           
Sbjct: 254  176

HSP 2 Score: 91.3 bits (225), Expect = 7.5e-16
Identity = 43/57 (75.44%), Postives = 48/57 (84.21%), Query Frame = -3


Query: 134 PLLSTTMQFTIVTRNPNRRVSIYYDRLTVFVSYRNQQITSQVILPPLAHEKRSTVAI 193
           PL+ST MQFTIVTRNPN+RVSIYYDRL+ FVSYRNQ IT   +LPPL H K STVA+
Sbjct: 64  PLISTNMQFTIVTRNPNKRVSIYYDRLSAFVSYRNQAITPPAMLPPLYHRKHSTVAL 120

Query: 194  253
           
Sbjct: 124  120

Query: 254  305
           
Sbjct: 184  120

[Close]

BLAST of CU087937 vs. TrEMBL
Match: F6I2Y6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0048g02530 PE=4 SV=1)

HSP 1 Score: 42.7 bits (99), Expect = 3.0e-01
Identity = 23/43 (53.49%), Postives = 24/43 (55.81%), Query Frame = -2


Query: 3   SPVLGGGAVAVSLEVANGLVTDQTIXXXXXXXXXXXXXXWKAG 62
           SPVLGG AV VSLEVANGLV D+                WKAG
Sbjct: 121 SPVLGGEAVPVSLEVANGLVMDEAYGVMGLRLVLLGRLKWKAG 163

Query: 63   122
           
Sbjct: 181  163

Query: 123  132
           
Sbjct: 241  163

HSP 2 Score: 91.3 bits (225), Expect = 7.5e-16
Identity = 43/57 (75.44%), Postives = 48/57 (84.21%), Query Frame = -3


Query: 134 PLLSTTMQFTIVTRNPNRRVSIYYDRLTVFVSYRNQQITSQVILPPLAHEKRSTVAI 193
           PL+ST MQFTIVTRNPN+RVSIYYDRL+ FVSYRNQ IT   +LPPL H K STVA+
Sbjct: 853 PLISTNMQFTIVTRNPNKRVSIYYDRLSAFVSYRNQAITPPAMLPPLYHRKHSTVAL 909

Query: 194  253
           
Sbjct: 913  909

Query: 254  305
           
Sbjct: 973  909

[Close]

BLAST of CU087937 vs. TrEMBL
Match: A5BJJ5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027904 PE=4 SV=1)

HSP 1 Score: 42.7 bits (99), Expect = 3.0e-01
Identity = 23/43 (53.49%), Postives = 24/43 (55.81%), Query Frame = -2


Query: 3   SPVLGGGAVAVSLEVANGLVTDQTIXXXXXXXXXXXXXXWKAG 62
           SPVLGG AV VSLEVANGLV D+                WKAG
Sbjct: 910 SPVLGGEAVPVSLEVANGLVMDEAYGVMGLRLVLLGRLKWKAG 952

Query: 63   122
           
Sbjct: 970  952

Query: 123  132
           
Sbjct: 1030  952

HSP 2 Score: 89.0 bits (219), Expect = 3.7e-15
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = -3


Query: 134 PLLSTTMQFTIVTRNPNRRVSIYYDRLTVFVSYRNQQITSQVILPPLAHEKRSTVAI 193
           P +  TMQFTIVTRNPNRRV+IYYDRL  FV+YRNQ IT QV+LPPL H +RSTVA+
Sbjct: 71  PQVCATMQFTIVTRNPNRRVTIYYDRLAAFVAYRNQGITPQVMLPPLVHGRRSTVAM 127

Query: 194  253
           
Sbjct: 131  127

Query: 254  305
           
Sbjct: 191  127

[Close]

BLAST of CU087937 vs. NCBI nr
Match: gi|449431934|ref|XP_004133755.1| (PREDICTED: protein YLS9-like [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 2.6e-22
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = -3


Query: 134 LPLLSTTMQFTIVTRNPNRRVSIYYDRLTVFVSYRNQQITSQVILPPLAHEKRSTVAI 193
           LPLLSTTMQFTIVTRNPNRRVSIYYDRLTVFVSYRNQQITSQVILPPLAHEKRSTVA+
Sbjct: 83  LPLLSTTMQFTIVTRNPNRRVSIYYDRLTVFVSYRNQQITSQVILPPLAHEKRSTVAM 140

Query: 194  253
           
Sbjct: 143  140

Query: 254  308
           
Sbjct: 203  140

[Close]

BLAST of CU087937 vs. NCBI nr
Match: gi|659074695|ref|XP_008437747.1| (PREDICTED: protein YLS9-like [Cucumis melo])

HSP 1 Score: 112.8 bits (281), Expect = 3.4e-22
Identity = 56/58 (96.55%), Postives = 58/58 (100.00%), Query Frame = -3


Query: 134 LPLLSTTMQFTIVTRNPNRRVSIYYDRLTVFVSYRNQQITSQVILPPLAHEKRSTVAI 193
           LPLLSTTMQFTIVTRNPNRRVSIYYDRLT+FVSYRNQQITSQVILPPLAHEKRSTVA+
Sbjct: 83  LPLLSTTMQFTIVTRNPNRRVSIYYDRLTIFVSYRNQQITSQVILPPLAHEKRSTVAM 140

Query: 194  253
           
Sbjct: 143  140

Query: 254  308
           
Sbjct: 203  140

[Close]

BLAST of CU087937 vs. NCBI nr
Match: gi|1009142786|ref|XP_015888911.1| (PREDICTED: protein YLS9 isoform X2 [Ziziphus jujuba])

HSP 1 Score: 96.7 bits (239), Expect = 2.5e-17
Identity = 46/57 (80.70%), Postives = 52/57 (91.23%), Query Frame = -3


Query: 134 PLLSTTMQFTIVTRNPNRRVSIYYDRLTVFVSYRNQQITSQVILPPLAHEKRSTVAI 193
           PL+STTMQFT+VTRNPN+RVSIYYDRL+ FVSYRNQ IT QV LPPL HEK+STVA+
Sbjct: 65  PLISTTMQFTVVTRNPNKRVSIYYDRLSAFVSYRNQAITPQVSLPPLYHEKKSTVAL 121

Query: 194  253
           
Sbjct: 125  121

Query: 254  305
           
Sbjct: 185  121

[Close]

BLAST of CU087937 vs. NCBI nr
Match: gi|1009142781|ref|XP_015888908.1| (PREDICTED: protein YLS9 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 96.7 bits (239), Expect = 2.5e-17
Identity = 46/57 (80.70%), Postives = 52/57 (91.23%), Query Frame = -3


Query: 134 PLLSTTMQFTIVTRNPNRRVSIYYDRLTVFVSYRNQQITSQVILPPLAHEKRSTVAI 193
           PL+STTMQFT+VTRNPN+RVSIYYDRL+ FVSYRNQ IT QV LPPL HEK+STVA+
Sbjct: 103 PLISTTMQFTVVTRNPNKRVSIYYDRLSAFVSYRNQAITPQVSLPPLYHEKKSTVAL 159

Query: 194  253
           
Sbjct: 163  159

Query: 254  305
           
Sbjct: 223  159

[Close]

BLAST of CU087937 vs. NCBI nr
Match: gi|694380987|ref|XP_009366593.1| (PREDICTED: protein YLS9 [Pyrus x bretschneideri])

HSP 1 Score: 96.3 bits (238), Expect = 3.3e-17
Identity = 46/57 (80.70%), Postives = 51/57 (89.47%), Query Frame = -3


Query: 134 PLLSTTMQFTIVTRNPNRRVSIYYDRLTVFVSYRNQQITSQVILPPLAHEKRSTVAI 193
           PL+STTMQFTIVTRNPNRRVSIYYDRL+ FV+Y+NQ IT QV LPPL HE RSTVA+
Sbjct: 75  PLISTTMQFTIVTRNPNRRVSIYYDRLSAFVAYKNQAITPQVTLPPLVHEHRSTVAV 131

Query: 194  253
           
Sbjct: 135  131

Query: 254  305
           
Sbjct: 195  131

The following BLAST results are available for this feature:

BLAST of CU087937 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NHL12_ARATH	1.1e-07	55.56	NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana GN=NHL12 PE=2 SV=1	[more]

BLAST of CU087937 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L882_CUCSA	6.3e-23	98.28	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116630 PE=4 SV=1	[more]
A0A0A0L882_CUCSA	5.9e-05	67.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116630 PE=4 SV=1	[more]
M5X269_PRUPE	2.6e+00	48.84	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011309mg PE=4 SV=1	[more]
F6I2Y6_VITVI	3.0e-01	53.49	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0048g02530 PE=4 SV=...	[more]
A5BJJ5_VITVI	3.0e-01	53.49	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027904 PE=4 SV=1	[more]

BLAST of CU087937 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449431934\|ref\|XP_004133755.1\|	2.6e-22	98.28	PREDICTED: protein YLS9-like [Cucumis sativus]	[more]
gi\|659074695\|ref\|XP_008437747.1\|	3.4e-22	96.55	PREDICTED: protein YLS9-like [Cucumis melo]	[more]
gi\|1009142786\|ref\|XP_015888911.1\|	2.5e-17	80.70	PREDICTED: protein YLS9 isoform X2 [Ziziphus jujuba]	[more]
gi\|1009142781\|ref\|XP_015888908.1\|	2.5e-17	80.70	PREDICTED: protein YLS9 isoform X1 [Ziziphus jujuba]	[more]
gi\|694380987\|ref\|XP_009366593.1\|	3.3e-17	80.70	PREDICTED: protein YLS9 [Pyrus x bretschneideri]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa3G116630	Csa3G116630	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02NTVZO	FKNP3UI02NTVZO	EST
H0050782	H0050782	EST