CU085199 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU085199
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Polyketide cyclase / dehydrase and lipid transport protein, putative
Location	Chr6 : 218914 .. 221365 (+)
Sequence length	469

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TGACTGATTATGAAAGATTGGCTGATTTCATACCTGGTCTCGCTATCAGCCAAATACTCTTTAAGATTGACAACCATGTTCGGCTCTTTCAGGTTGGAGAGCAAAACTTGGCCTTTTGGTTTGAAATTTAAATGCTAAAAGGAACCATTGATTGTTATGAGAACGATCTCGAAAGACTTCCTTTCGGTAAAAGACGAGTTATCAAATTCAAGATGATTGAAGGTGACTTTGAACTCTTTGAGGGGGAATGGTCAATTGAGCAGTTTGGTGAAGACGATGATAGCTTTCAAGATCAAGAAATACATTCAACTTTGTCATATAGTGTTGATGTAAAGCCAAAGCTTCTATTGCCCGTTCGACTTCTTGAGGGGCGGCTTTGTGGTGAGATGAAGGCTAACCTAGTGTGTATTCGAGAAGAAGTACATAAAACCAATTCAACTACCCCCTAATGGATGGATTCGATTCTTCC

Library


Library category	ESTs
fruit (8DPP) library	1
gynoecious flower library	2

Homology

[Close]

BLAST of CU085199 vs. TrEMBL
Match: A0A0A0KCX4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G001770 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 4.7e-62
Identity = 124/148 (83.78%), Postives = 126/148 (85.14%), Query Frame = 3


Query: 3   TDYERLADFIPGLAISQILFKIDNHVRLFQVGEQNLAFWFEI*MLKGTIDCYENDLERLP 62
           TDYERLADFIPGLAISQILFKIDNHVRLFQVGEQNLAF  +    KGTIDCYENDLERLP
Sbjct: 152 TDYERLADFIPGLAISQILFKIDNHVRLFQVGEQNLAFGLKF-NAKGTIDCYENDLERLP 211

Query: 63  FGKRRVIKFKMIEGDFELFEGEWSIEQFGEDDDSFQDQEIHSTLSYSVDXXXXXXXXXXX 122
           FGKRRVIKFKMIEGDFELFEGEWSIEQFGEDDDSFQDQEIHSTLSYSVD           
Sbjct: 212 FGKRRVIKFKMIEGDFELFEGEWSIEQFGEDDDSFQDQEIHSTLSYSVDVKPKLLLPVRL 271

Query: 123 XXXXXCGEMKANLVCIREEVHKTNSTTP 182
                CGE+KANLVCIREEVHKTNSTTP
Sbjct: 272 LEGRLCGEIKANLVCIREEVHKTNSTTP 298

Query: 183  242
           
Sbjct: 332  298

Query: 243  302
           
Sbjct: 392  298

Query: 303  362
           
Sbjct: 452  298

Query: 363  422
           
Sbjct: 512  298

Query: 423  447
           
Sbjct: 572  298

[Close]

BLAST of CU085199 vs. TrEMBL
Match: A0A067HFI2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022784mg PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.4e-34
Identity = 79/146 (54.11%), Postives = 97/146 (66.44%), Query Frame = 3


Query: 3   TDYERLADFIPGLAISQILFKIDNHVRLFQVGEQNLAFWFEI*MLKGTIDCYENDLERLP 62
           TDYE+LADF+P LA+SQ++ K DN VRL+Q+G+QNLAF  +    KG +DCYE DLE  P
Sbjct: 139 TDYEKLADFVPNLAVSQVVEKNDNFVRLYQIGQQNLAFGIKF-NAKGVLDCYEKDLEIFP 198

Query: 63  FGKRRVIKFKMIEGDFELFEGEWSIEQFG----EDDDSFQDQEIHSTLSYSVDXXXXXXX 122
            GK+R I+FKMIEGDF+LFEG+WSIEQF     ED +S   Q+  +TLSYSVD       
Sbjct: 199 SGKKRDIEFKMIEGDFQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWL 258

Query: 123 XXXXXXXXXCGEMKANLVCIREEVHK 182
                    C E+K NL CIRE   K
Sbjct: 259 PVRLVEGRLCNEIKTNLSCIREAAKK 283

Query: 183  242
           
Sbjct: 319  283

Query: 243  302
           
Sbjct: 379  283

Query: 303  362
           
Sbjct: 439  283

Query: 363  422
           
Sbjct: 499  283

Query: 423  429
           
Sbjct: 559  283

[Close]

BLAST of CU085199 vs. TrEMBL
Match: V4U6T6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021459mg PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.4e-34
Identity = 79/146 (54.11%), Postives = 97/146 (66.44%), Query Frame = 3


Query: 3   TDYERLADFIPGLAISQILFKIDNHVRLFQVGEQNLAFWFEI*MLKGTIDCYENDLERLP 62
           TDYE+LADF+P LA+SQ++ K DN VRL+Q+G+QNLAF  +    KG +DCYE DLE  P
Sbjct: 139 TDYEKLADFVPNLAVSQVVEKNDNFVRLYQIGQQNLAFGIKF-NAKGVLDCYEKDLEIFP 198

Query: 63  FGKRRVIKFKMIEGDFELFEGEWSIEQFG----EDDDSFQDQEIHSTLSYSVDXXXXXXX 122
            GK+R I+FKMIEGDF+LFEG+WSIEQF     ED +S   Q+  +TLSYSVD       
Sbjct: 199 SGKKRDIEFKMIEGDFQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWL 258

Query: 123 XXXXXXXXXCGEMKANLVCIREEVHK 182
                    C E+K NL CIRE   K
Sbjct: 259 PVRLVEGRLCNEIKTNLSCIREAAKK 283

Query: 183  242
           
Sbjct: 319  283

Query: 243  302
           
Sbjct: 379  283

Query: 303  362
           
Sbjct: 439  283

Query: 363  422
           
Sbjct: 499  283

Query: 423  429
           
Sbjct: 559  283

[Close]

BLAST of CU085199 vs. TrEMBL
Match: A0A068V963_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00004950001 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.4e-34
Identity = 76/146 (52.05%), Postives = 97/146 (66.44%), Query Frame = 3


Query: 3   TDYERLADFIPGLAISQILFKIDNHVRLFQVGEQNLAFWFEI*MLKGTIDCYENDLERLP 62
           TDYE+LADFIPGLA+SQ+L K DN  RLFQ+G+QNLAF  +    KG IDCYE +++ LP
Sbjct: 151 TDYEKLADFIPGLAVSQLLQKTDNFARLFQIGQQNLAFGLKF-KAKGVIDCYEKEIQNLP 210

Query: 63  FGKRRVIKFKMIEGDFELFEGEWSIEQFGEDD----DSFQDQEIHSTLSYSVDXXXXXXX 122
           FGKRR I+F+MIEGDF+LF+G+W +EQ    D    DS + QE H+ LSY VD       
Sbjct: 211 FGKRRDIEFEMIEGDFQLFQGKWCVEQLSTGDYDIADSIKGQEFHTNLSYIVDVEPKVWL 270

Query: 123 XXXXXXXXXCGEMKANLVCIREEVHK 182
                    C E+K NL+CI+E   +
Sbjct: 271 PVHLVQGRLCREIKMNLLCIKEAAER 295

Query: 183  242
           
Sbjct: 331  295

Query: 243  302
           
Sbjct: 391  295

Query: 303  362
           
Sbjct: 451  295

Query: 363  422
           
Sbjct: 511  295

Query: 423  429
           
Sbjct: 571  295

[Close]

BLAST of CU085199 vs. TrEMBL
Match: A0A058ZZ96_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00552 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 6.0e-33
Identity = 76/151 (50.33%), Postives = 98/151 (64.90%), Query Frame = 3


Query: 3   TDYERLADFIPGLAISQILFKIDNHVRLFQVGEQNLAFWFEI*MLKGTIDCYENDLERLP 62
           TDYERL+DFIPGLA+S+++ K +N  RL+Q+G+QNLAF  +    KG +DCYE DLE LP
Sbjct: 126 TDYERLSDFIPGLAVSELMEKRENFARLYQIGQQNLAFGLKF-NAKGVVDCYEKDLECLP 185

Query: 63  FGKRRVIKFKMIEGDFELFEGEWSIEQFG----EDDDSFQDQEIHSTLSYSVDXXXXXXX 122
            G++R I+FKMIEGDF++FEG+WSIEQ      ED      QE  +TLSY VD       
Sbjct: 186 SGQKRDIEFKMIEGDFQVFEGKWSIEQLNIGAYEDSSPTNGQEFQTTLSYIVDVKPKLWL 245

Query: 123 XXXXXXXXXCGEMKANLVCIREEVHKTNSTT 182
                    C E+  NL+CIRE+  K NS +
Sbjct: 246 PVRLVEGRLCSEITMNLLCIREQALKVNSNS 275

Query: 183  242
           
Sbjct: 306  275

Query: 243  302
           
Sbjct: 366  275

Query: 303  362
           
Sbjct: 426  275

Query: 363  422
           
Sbjct: 486  275

Query: 423  444
           
Sbjct: 546  275

[Close]

BLAST of CU085199 vs. NCBI nr
Match: gi|778709027|ref|XP_004138514.2| (PREDICTED: uncharacterized protein LOC101204838 [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 8.0e-63
Identity = 124/148 (83.78%), Postives = 126/148 (85.14%), Query Frame = 3


Query: 3   TDYERLADFIPGLAISQILFKIDNHVRLFQVGEQNLAFWFEI*MLKGTIDCYENDLERLP 62
           TDYERLADFIPGLAISQILFKIDNHVRLFQVGEQNLAF  +    KGTIDCYENDLERLP
Sbjct: 152 TDYERLADFIPGLAISQILFKIDNHVRLFQVGEQNLAFGLKF-NAKGTIDCYENDLERLP 211

Query: 63  FGKRRVIKFKMIEGDFELFEGEWSIEQFGEDDDSFQDQEIHSTLSYSVDXXXXXXXXXXX 122
           FGKRRVIKFKMIEGDFELFEGEWSIEQFGEDDDSFQDQEIHSTLSYSVD           
Sbjct: 212 FGKRRVIKFKMIEGDFELFEGEWSIEQFGEDDDSFQDQEIHSTLSYSVDVKPKLLLPVRL 271

Query: 123 XXXXXCGEMKANLVCIREEVHKTNSTTP 182
                CGE+KANLVCIREEVHKTNSTTP
Sbjct: 272 LEGRLCGEIKANLVCIREEVHKTNSTTP 298

Query: 183  242
           
Sbjct: 332  298

Query: 243  302
           
Sbjct: 392  298

Query: 303  362
           
Sbjct: 452  298

Query: 363  422
           
Sbjct: 512  298

Query: 423  447
           
Sbjct: 572  298

[Close]

BLAST of CU085199 vs. NCBI nr
Match: gi|659116819|ref|XP_008458275.1| (PREDICTED: uncharacterized protein LOC103497743 [Cucumis melo])

HSP 1 Score: 238.0 bits (606), Expect = 1.1e-59
Identity = 118/147 (80.27%), Postives = 123/147 (83.67%), Query Frame = 3


Query: 3   TDYERLADFIPGLAISQILFKIDNHVRLFQVGEQNLAFWFEI*MLKGTIDCYENDLERLP 62
           TDYERLADFIPGLAISQILFKI NH RLFQVGEQNLAF F+    KGTIDCYENDLERLP
Sbjct: 152 TDYERLADFIPGLAISQILFKIGNHARLFQVGEQNLAFGFKF-NAKGTIDCYENDLERLP 211

Query: 63  FGKRRVIKFKMIEGDFELFEGEWSIEQFGEDDDSFQDQEIHSTLSYSVDXXXXXXXXXXX 122
           FGKRRVIKFKMIEGDFELFEGEWSIEQFGEDDDSFQDQE+HSTLSYSVD           
Sbjct: 212 FGKRRVIKFKMIEGDFELFEGEWSIEQFGEDDDSFQDQEVHSTLSYSVDVKPKLLLPVRL 271

Query: 123 XXXXXCGEMKANLVCIREEVHKTNSTT 182
                C E+KANL+CIREEVHKT+STT
Sbjct: 272 LEGRLCSEIKANLMCIREEVHKTSSTT 297

Query: 183  242
           
Sbjct: 332  297

Query: 243  302
           
Sbjct: 392  297

Query: 303  362
           
Sbjct: 452  297

Query: 363  422
           
Sbjct: 512  297

Query: 423  444
           
Sbjct: 572  297

[Close]

BLAST of CU085199 vs. NCBI nr
Match: gi|1009148245|ref|XP_015891833.1| (PREDICTED: uncharacterized protein LOC107426226 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 167.2 bits (422), Expect = 2.3e-38
Identity = 85/144 (59.03%), Postives = 99/144 (68.75%), Query Frame = 3


Query: 3   TDYERLADFIPGLAISQILFKIDNHVRLFQVGEQNLAFWFEI*MLKGTIDCYENDLERLP 62
           TDYERLADFIPGLA+SQ+L K  N  RLFQ+GEQ LAF  +     G IDCYE +LE LP
Sbjct: 131 TDYERLADFIPGLAVSQLLHKTSNSARLFQIGEQKLAFGLKF-NAGGIIDCYEKELESLP 190

Query: 63  FGKRRVIKFKMIEGDFELFEGEWSIEQF--GEDDDSFQDQEIHSTLSYSVDXXXXXXXXX 122
           FG++R I+FKMIEGDF++FEG+WSIEQ   G +DDS  DQEIH+TLSY VD         
Sbjct: 191 FGQKRDIEFKMIEGDFQIFEGKWSIEQVDRGREDDSGIDQEIHTTLSYLVDVKPKLWLPV 250

Query: 123 XXXXXXXCGEMKANLVCIREEVHK 182
                  C E+K NL CIREE  K
Sbjct: 251 RLVEGRLCNEIKVNLACIREEARK 273

Query: 183  242
           
Sbjct: 311  273

Query: 243  302
           
Sbjct: 371  273

Query: 303  362
           
Sbjct: 431  273

Query: 363  422
           
Sbjct: 491  273

Query: 423  429
           
Sbjct: 551  273

[Close]

BLAST of CU085199 vs. NCBI nr
Match: gi|567904326|ref|XP_006444651.1| (hypothetical protein CICLE_v10021459mg [Citrus clementina])

HSP 1 Score: 156.8 bits (395), Expect = 3.2e-35
Identity = 79/146 (54.11%), Postives = 97/146 (66.44%), Query Frame = 3


Query: 3   TDYERLADFIPGLAISQILFKIDNHVRLFQVGEQNLAFWFEI*MLKGTIDCYENDLERLP 62
           TDYE+LADF+P LA+SQ++ K DN VRL+Q+G+QNLAF  +    KG +DCYE DLE  P
Sbjct: 139 TDYEKLADFVPNLAVSQVVEKNDNFVRLYQIGQQNLAFGIKF-NAKGVLDCYEKDLEIFP 198

Query: 63  FGKRRVIKFKMIEGDFELFEGEWSIEQFG----EDDDSFQDQEIHSTLSYSVDXXXXXXX 122
            GK+R I+FKMIEGDF+LFEG+WSIEQF     ED +S   Q+  +TLSYSVD       
Sbjct: 199 SGKKRDIEFKMIEGDFQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWL 258

Query: 123 XXXXXXXXXCGEMKANLVCIREEVHK 182
                    C E+K NL CIRE   K
Sbjct: 259 PVRLVEGRLCNEIKTNLSCIREAAKK 283

Query: 183  242
           
Sbjct: 319  283

Query: 243  302
           
Sbjct: 379  283

Query: 303  362
           
Sbjct: 439  283

Query: 363  422
           
Sbjct: 499  283

Query: 423  429
           
Sbjct: 559  283

[Close]

BLAST of CU085199 vs. NCBI nr
Match: gi|568876778|ref|XP_006491447.1| (PREDICTED: uncharacterized protein LOC102618481 isoform X1 [Citrus sinensis])

HSP 1 Score: 156.8 bits (395), Expect = 3.2e-35
Identity = 79/146 (54.11%), Postives = 97/146 (66.44%), Query Frame = 3


Query: 3   TDYERLADFIPGLAISQILFKIDNHVRLFQVGEQNLAFWFEI*MLKGTIDCYENDLERLP 62
           TDYE+LADF+P LA+SQ++ K DN VRL+Q+G+QNLAF  +    KG +DCYE DLE  P
Sbjct: 138 TDYEKLADFVPNLAVSQVVEKNDNFVRLYQIGQQNLAFGIKF-NAKGVLDCYEKDLEIFP 197

Query: 63  FGKRRVIKFKMIEGDFELFEGEWSIEQFG----EDDDSFQDQEIHSTLSYSVDXXXXXXX 122
            GK+R I+FKMIEGDF+LFEG+WSIEQF     ED +S   Q+  +TLSYSVD       
Sbjct: 198 SGKKRDIEFKMIEGDFQLFEGKWSIEQFNGGKFEDSESLLSQKFQTTLSYSVDVRPKLWL 257

Query: 123 XXXXXXXXXCGEMKANLVCIREEVHK 182
                    C E+K NL CIRE   K
Sbjct: 258 PVRLVEGRLCNEIKTNLSCIREAAKK 282

Query: 183  242
           
Sbjct: 318  282

Query: 243  302
           
Sbjct: 378  282

Query: 303  362
           
Sbjct: 438  282

Query: 363  422
           
Sbjct: 498  282

Query: 423  429
           
Sbjct: 558  282

The following BLAST results are available for this feature:

BLAST of CU085199 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCX4_CUCSA	4.7e-62	83.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G001770 PE=4 SV=1	[more]
A0A067HFI2_CITSI	1.4e-34	54.11	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022784mg PE=4 SV=1	[more]
V4U6T6_9ROSI	1.4e-34	54.11	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021459mg PE=4 SV=1	[more]
A0A068V963_COFCA	2.4e-34	52.05	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00004950001 PE=4 SV=1	[more]
A0A058ZZ96_EUCGR	6.0e-33	50.33	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00552 PE=4 SV=1	[more]

BLAST of CU085199 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778709027\|ref\|XP_004138514.2\|	8.0e-63	83.78	PREDICTED: uncharacterized protein LOC101204838 [Cucumis sativus]	[more]
gi\|659116819\|ref\|XP_008458275.1\|	1.1e-59	80.27	PREDICTED: uncharacterized protein LOC103497743 [Cucumis melo]	[more]
gi\|1009148245\|ref\|XP_015891833.1\|	2.3e-38	59.03	PREDICTED: uncharacterized protein LOC107426226 isoform X1 [Ziziphus jujuba]	[more]
gi\|567904326\|ref\|XP_006444651.1\|	3.2e-35	54.11	hypothetical protein CICLE_v10021459mg [Citrus clementina]	[more]
gi\|568876778\|ref\|XP_006491447.1\|	3.2e-35	54.11	PREDICTED: uncharacterized protein LOC102618481 isoform X1 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR005031	COQ10_START

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G001770	Csa6G001770	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02MR5OZ	FKNP3UI02MR5OZ	EST
G0064515	G0064515	EST
G0081384	G0081384	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005031	Coenzyme Q-binding protein COQ10, START domain	PFAM	PF03364	Polyketide_cyc	coord: 2..134 score: 1.8
None	No IPR available	PANTHER	PTHR34060	FAMILY NOT NAMED	coord: 2..140 score: 7.7
None	No IPR available	PANTHER	PTHR34060:SF1	POLYKETIDE CYCLASE / DEHYDRASE AND LIPID TRANSPORT PROTEIN	coord: 2..140 score: 7.7
None	No IPR available	unknown	SSF55961	Bet v1-like	coord: 2..142 score: 1.9