MELO3C035659.2.1 (mRNA) Melon (DHL92) v3.6.1

Overview
NameMELO3C035659.2.1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionC2 domain-containing family protein
Locationchr12 : 16622345 .. 16623719 (+)
Sequence length696
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTTTGTCGCTTAGTTTCTAACACGTGGATGATGATTTTCATCGATTTGATTTAATTTGCTTCTCTATCTCTCTTTAATTTACAGCCCAGTACTCCACTTGAGCACTATGAATGGTTAAATAAGCCATTGATGGAGATTTGGCCTAACTTCATCAACCCAAAACTTTCATTAAAGTTCTCTACTATTGCTGAGGTGAATCTATTTTTCTTCTTCTGCAATGTCTGACTTTTTTTTCAGCAATTTTTTTTTTAGGTGGACTTGGCTGTAACTGAACTCAATATACTCAATATTAACCTTACAATCTTTGCCTAAAGTTGTTTCAATGGTTATTTATCGTGTTGCTATTTTAATTAGTTTCACTATTAGATGCTTATTTTGTCTTCATAGACAAATGCAGGAAGGTCGATAAAATATATAGCTTTTTGGATTTCTAATTTGAGAAAATGTGAAAAATCAAATAAATAGAGAAAAGAGTGGAACTGACTGATCAACATTCAATATGATTCTACATGAAGATACAGGAACTCTTTGGTTCAATTTTTATGAGTTAAATCCAAGCAATGTGAAGTATGACTATCTAGCCAGTTGTGAAATAAAGGTACTCTCCTTGTACCTTAGTTGTGCTACCTAGGTTGTCAGAAGAAATTTTGCAGTGAACACTTCAATATTTTGCAGCTAACAGTGAAGCTTATTGTTAAAAGAGTTGCAATTTTCTAATGGCTCACATAGCTTTTTTTGTTACACATGTACCAAAGTAATTGTGTAACCTTTATTCTAAGTTCAATTCACACTTCTGAAATAATATAGAAACTATTGGTCTATTTGCGATCGACTACACGAAGGGTAGTGGTGCATAGAAGAAATAGGTAAGCGTGGTTTATTTTCCCAATCGTAAACATAAACTATTTCCTTCTTTTTTTTCTTTCTGGTGCATAGTGTCCAAAGCAGCTATAAAATTATCAACCGTAGTGTCTATGAGTTCTACCGTATTTCTTCATGTGATAAATAGTTTTTGTATTAAAGAGGTACATGTTTCACTTATATTTGCAACAGTTATAGCATTTTACCCTATGTAGTCCATGTTTTTATTTCATTATTCTCTCTTCTTTGTCTTCTTCTAGGTATTGATACCGGTCTTTATTGAATTTGTTAGCCATAATGGAAACATAATAGTTTCCTTGTGTTTAAGTTTATTTTGATGTGGAGTCTGTCTACGTAATTATGTTTTGAATTACTTAATGAATTTTAATTAAGGTTCATCTTTGGCAAATTTGCAGGTATTTGAAGAATCTGTGGACCATGAGATCAATTATCAAGTCCATTTATACTTTAATTTGATTAGATTAGGTCACTCATACATGTATTACAGTTAA

mRNA sequence

GTTTTTGTCGCTTAGTTTCTAACACGTGGATGATGATTTTCATCGATTTGATTTAATTTGCTTCTCTATCTCTCTTTAATTTACAGCCCAGTACTCCACTTGAGCACTATGAATGGTTAAATAAGCCATTGATGGAGATTTGGCCTAACTTCATCAACCCAAAACTTTCATTAAAGTTCTCTACTATTGCTGAGGTGAATCTATTTTTCTTCTTCTGCAATGTCTGACTTTTTTTTCAGCAATTTTTTTTTTAGGTGGACTTGGCTGTAACTGAACTCAATATACTCAATATTAACCTTACAATCTTTGCCTAAAGTTGTTTCAATGGTTATTTATCGTGTTGCTATTTTAATTAGTTTCACTATTAGATGCTTATTTTGTCTTCATAGACAAATGCAGGAAGGTCGATAAAATATATAGCTTTTTGGATTTCTAATTTGAGAAAATGTGAAAAATCAAATAAATAGAGAAAAGAGTGGAACTGACTGATCAACATTCAATATGATTCTACATGAAGATACAGGAACTCTTTGGTTCAATTTTTATGAGTTAAATCCAAGCAATGTGAAGTATGACTATCTAGCCAGTTGTGAAATAAAGGTATTTGAAGAATCTGTGGACCATGAGATCAATTATCAAGTCCATTTATACTTTAATTTGATTAGATTAGGTCACTCATACATGTATTACAGTTAA

Coding sequence (CDS)

ATGATTCTACATGAAGATACAGGAACTCTTTGGTTCAATTTTTATGAGTTAAATCCAAGCAATGTGAAGTATGACTATCTAGCCAGTTGTGAAATAAAGGTATTTGAAGAATCTGTGGACCATGAGATCAATTATCAAGTCCATTTATACTTTAATTTGATTAGATTAGGTCACTCATACATGTATTACAGTTAA

Protein sequence

MILHEDTGTLWFNFYELNPSNVKYDYLASCEIKVFEESVDHEINYQVHLYFNLIRLGHSYMYYS
Homology
[Close]
BLAST of MELO3C035659.2.1 vs. NCBI nr
Match: XP_004138346.1 (PREDICTED: uncharacterized protein LOC101204113 [Cucumis sativus] >KGN63824.1 hypothetical protein Csa_1G023610 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 4.5e-08
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 1   MILHEDTGTLWFNFYELNPSNVKYDYLASCEIKV 35
           MILHEDTGTL FN YE NPSNVKYDYLASCE+K+
Sbjct: 371 MILHEDTGTLRFNLYESNPSNVKYDYLASCEVKM 404

[Close]
BLAST of MELO3C035659.2.1 vs. NCBI nr
Match: XP_008453397.1 (PREDICTED: synaptotagmin-5 isoform X1 [Cucumis melo])

HSP 1 Score: 66.2 bits (160), Expect = 4.5e-08
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 1   MILHEDTGTLWFNFYELNPSNVKYDYLASCEIKV 35
           MILHEDTGTL FN YE NPSNVKYDYLASCE+K+
Sbjct: 361 MILHEDTGTLRFNLYESNPSNVKYDYLASCEVKM 394

[Close]
BLAST of MELO3C035659.2.1 vs. NCBI nr
Match: XP_008453398.1 (PREDICTED: uncharacterized protein LOC103494128 isoform X2 [Cucumis melo])

HSP 1 Score: 66.2 bits (160), Expect = 4.5e-08
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 1   MILHEDTGTLWFNFYELNPSNVKYDYLASCEIKV 35
           MILHEDTGTL FN YE NPSNVKYDYLASCE+K+
Sbjct: 197 MILHEDTGTLRFNLYESNPSNVKYDYLASCEVKM 230

[Close]
BLAST of MELO3C035659.2.1 vs. NCBI nr
Match: XP_023531063.1 (synaptotagmin-5-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 64.3 bits (155), Expect = 1.7e-07
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 1   MILHEDTGTLWFNFYELNPSNVKYDYLASCEIKV 35
           MILHEDTGTL FN YE NPS+VKYDYLASCE+K+
Sbjct: 359 MILHEDTGTLRFNLYESNPSHVKYDYLASCEVKM 392

[Close]
BLAST of MELO3C035659.2.1 vs. NCBI nr
Match: XP_023531067.1 (synaptotagmin-5-like isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 64.3 bits (155), Expect = 1.7e-07
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 1   MILHEDTGTLWFNFYELNPSNVKYDYLASCEIKV 35
           MILHEDTGTL FN YE NPS+VKYDYLASCE+K+
Sbjct: 356 MILHEDTGTLRFNLYESNPSHVKYDYLASCEVKM 389

[Close]
BLAST of MELO3C035659.2.1 vs. TAIR10
Match: AT3G18370.1 (C2 domain-containing protein)

HSP 1 Score: 54.7 bits (130), Expect = 2.5e-08
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 0 

Query: 1   MILHEDTGTLWFNFYELNPSNVKYDYLASCEIKV 35
           MILH++TGTL FN YE NP +V+YD LASCE+K+
Sbjct: 362 MILHDNTGTLKFNLYENNPGSVRYDSLASCEVKM 395

[Close]
BLAST of MELO3C035659.2.1 vs. TrEMBL
Match: tr|A0A1S3BVL0|A0A1S3BVL0_CUCME (uncharacterized protein LOC103494128 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494128 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.0e-08
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 1   MILHEDTGTLWFNFYELNPSNVKYDYLASCEIKV 35
           MILHEDTGTL FN YE NPSNVKYDYLASCE+K+
Sbjct: 197 MILHEDTGTLRFNLYESNPSNVKYDYLASCEVKM 230

[Close]
BLAST of MELO3C035659.2.1 vs. TrEMBL
Match: tr|A0A1S3BXB4|A0A1S3BXB4_CUCME (synaptotagmin-5 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494128 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.0e-08
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 1   MILHEDTGTLWFNFYELNPSNVKYDYLASCEIKV 35
           MILHEDTGTL FN YE NPSNVKYDYLASCE+K+
Sbjct: 361 MILHEDTGTLRFNLYESNPSNVKYDYLASCEVKM 394

[Close]
BLAST of MELO3C035659.2.1 vs. TrEMBL
Match: tr|A0A0A0LS29|A0A0A0LS29_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G023610 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.0e-08
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 1   MILHEDTGTLWFNFYELNPSNVKYDYLASCEIKV 35
           MILHEDTGTL FN YE NPSNVKYDYLASCE+K+
Sbjct: 371 MILHEDTGTLRFNLYESNPSNVKYDYLASCEVKM 404

[Close]
BLAST of MELO3C035659.2.1 vs. TrEMBL
Match: tr|A0A2P6P3P6|A0A2P6P3P6_ROSCH (Putative C2 domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0185511 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.6e-07
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 0 

Query: 1   MILHEDTGTLWFNFYELNPSNVKYDYLASCEIKV 35
           M+LHE+TGTL FN YE  P+NVKYDYLASCE+KV
Sbjct: 360 MVLHEETGTLRFNLYESTPNNVKYDYLASCEVKV 393

[Close]
BLAST of MELO3C035659.2.1 vs. TrEMBL
Match: tr|A5BQ85|A5BQ85_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_035295 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.6e-07
Identity = 28/34 (82.35%), Postives = 29/34 (85.29%), Query Frame = 0 

Query: 1   MILHEDTGTLWFNFYELNPSNVKYDYLASCEIKV 35
           MILHEDTGTL F  YE  PSNVKYDYLASCEIK+
Sbjct: 327 MILHEDTGTLRFQLYESTPSNVKYDYLASCEIKM 360

The following BLAST results are available for this feature:
BLAST of MELO3C035659.2.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004138346.14.5e-0885.29PREDICTED: uncharacterized protein LOC101204113 [Cucumis sativus] >KGN63824.1 hy... [more]
XP_008453397.14.5e-0885.29PREDICTED: synaptotagmin-5 isoform X1 [Cucumis melo][more]
XP_008453398.14.5e-0885.29PREDICTED: uncharacterized protein LOC103494128 isoform X2 [Cucumis melo][more]
XP_023531063.11.7e-0782.35synaptotagmin-5-like isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_023531067.11.7e-0782.35synaptotagmin-5-like isoform X4 [Cucurbita pepo subsp. pepo][more]
BLAST of MELO3C035659.2.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G18370.12.5e-0867.65C2 domain-containing protein[more]
BLAST of MELO3C035659.2.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C035659.2.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BVL0|A0A1S3BVL0_CUCME3.0e-0885.29uncharacterized protein LOC103494128 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S3BXB4|A0A1S3BXB4_CUCME3.0e-0885.29synaptotagmin-5 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494128 PE=4 SV=1[more]
tr|A0A0A0LS29|A0A0A0LS29_CUCSA3.0e-0885.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G023610 PE=4 SV=1[more]
tr|A0A2P6P3P6|A0A2P6P3P6_ROSCH5.6e-0776.47Putative C2 domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr... [more]
tr|A5BQ85|A5BQ85_VITVI5.6e-0782.35Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_035295 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005783 endoplasmic reticulum
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C035659.2MELO3C035659.2gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C035659.2.1.five_prime_UTR.1MELO3C035659.2.1.five_prime_UTR.1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C035659.2.1.exon.1MELO3C035659.2.1.exon.1exon
MELO3C035659.2.1.exon.2MELO3C035659.2.1.exon.2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C035659.2.1.CDS.1MELO3C035659.2.1.CDS.1CDS
MELO3C035659.2.1.CDS.2MELO3C035659.2.1.CDS.2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C035659.2.1MELO3C035659.2.1-proteinpolypeptide