MELO3C035498.2.1 (mRNA) Melon (DHL92) v3.6.1

Overview
NameMELO3C035498.2.1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionAP-3 complex subunit sigma-like
Locationchr12 : 6757721 .. 6759107 (+)
Sequence length461
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGTTATAGAAGTAGTAGTGAAGAAAAAGAAACTGCTTAAACATCACACACTACGTATACTTTTCTTTATTTTAAAGTTTTTTGTAATTTTCTTTTTTAATGATGTATAGATTTCAACTGCATCTTTGTTGAATTATCATACACCATAGAATCTGAAGAAGAAGGAAGTTCTGGAGCTGAGGAGTTCTGGCTTTTTTTCCAGGTTAATTCTCTCTTCTGTTGGTTTCTTTTTTTTTTTTTCGGCTACCGGGACGGTGGCGACTTCTATGAGAATTTTGTTGTCTGTATTTCTTCCATCGAGATCTTCTCCGACTTTTTTTGTTTTTCTTTAATTAATGGGGTTTTTGTTTAGGAATGAATGTTAGGTTTTCACGATGTGGGTGTTAATTTTTTGTGTATAATCATGTTTAAATTTTGTCTATTTGGGGTGAAATGGGTGTAGTTTGCTGGCTTTTTGTTTATGTATTCGAGATAATTATTGTTCTTTGGTTATTCTTTTTTGTTTATTGTAGTCTGATTTTTTGGGCTTTTTTTTTTTTTTATTTGAGACTGTATATTGAGGAACTGAAGGAGAAAGGAGAGTTACAGAGTGGGGAAGAGGGAAATTCGGGTGTTATTGTTAGTAATTTGGAGAAGAGCATTTTAGTTCTTTCAGGTTCAAGAAGTAAAGCTCGACCAACTAAAGAGGATGACAATCTTTGGGGTTCCATAGCCTGTTTATGCTTTGTTGCTTTGGATGTTTCTTTAGCTTGTTTTTCTTTTGATGTTTAATTTGAGCCTCAAGAAATTAGTTGTTCATTTACTTGAGTTGGTGATTTTCTAATGCAGAATTACAAAATAAATGCATATACAAAAGCAGACTTGCAATGCACAAATGCATATACAAAAGAGGTTGAGAGTTGCTTGCCTTCTGATGCAAATATCAATAATGTTGTGAAGGTATTTTAGATTTTATTTGTCTTTGTCTTGAATTAAGGACTATTTTTGTGGTTAGTTTCTGACGGGCACCGTTTGGTCTATTAAAAAAACAATGTAAAGTATTAATGATCAGCTGTGTTGATGATTCTGGTGGTCTGGAAGCAACTCTAGGCATTAAATTCATTATGGTTGTTGGAGAATAGAAACTGTGATTTTATTTGTGTAGTATGATCATGTTACTCTTAATTGTTGCTAGTTGATTTCTTTGACTGAATAAATTTTGAACATACTTTGTTGTTGTGATGTTATCTACTTTTTGTAGATTGGCTCTGTAGTTGGTGGTACTTATTTTGGCTCATGAATTGGAGGTAGTAGAGGATGCAGAATGCAAGTTTATTTGAAGCTAAGTTTCATTCAAGGTCATTGAGTTGGGTTGATAGAAGTAATGTTTTGTATATGACAATA

mRNA sequence

ATGAAAGTTATAGAAGTAGTAGTGAAGAAAAAGAAACTGCTTAAACATCACACACTACATTTCAACTGCATCTTTGTTGAATTATCATACACCATAGAATCTGAAGAAGAAGGAAGTTCTGGAGCTGAGGAGTTCTGGCTTTTTTTCCAGGAACTGAAGGAGAAAGGAGAGTTACAGAGTGGGGAAGAGGGAAATTCGGGTGTTATTAATTACAAAATAAATGCATATACAAAAGCAGACTTGCAATGCACAAATGCATATACAAAAGAGGTTGAGAGTTGCTTGCCTTCTGATGCAAATATCAATAATGTTGTGAAGATTGGCTCTGTAGTTGGTGGTACTTATTTTGGCTCATGAATTGGAGGTAGTAGAGGATGCAGAATGCAAGTTTATTTGAAGCTAAGTTTCATTCAAGGTCATTGAGTTGGGTTGATAGAAGTAATGTTTTGTATATGACAATA

Coding sequence (CDS)

ATGAAAGTTATAGAAGTAGTAGTGAAGAAAAAGAAACTGCTTAAACATCACACACTACATTTCAACTGCATCTTTGTTGAATTATCATACACCATAGAATCTGAAGAAGAAGGAAGTTCTGGAGCTGAGGAGTTCTGGCTTTTTTTCCAGGAACTGAAGGAGAAAGGAGAGTTACAGAGTGGGGAAGAGGGAAATTCGGGTGTTATTAATTACAAAATAAATGCATATACAAAAGCAGACTTGCAATGCACAAATGCATATACAAAAGAGGTTGAGAGTTGCTTGCCTTCTGATGCAAATATCAATAATGTTGTGAAGATTGGCTCTGTAGTTGGTGGTACTTATTTTGGCTCATGA

Protein sequence

MKVIEVVVKKKKLLKHHTLHFNCIFVELSYTIESEEEGSSGAEEFWLFFQELKEKGELQSGEEGNSGVINYKINAYTKADLQCTNAYTKEVESCLPSDANINNVVKIGSVVGGTYFGS
Homology
[Close]
BLAST of MELO3C035498.2.1 vs. NCBI nr
Match: XP_008464326.1 (PREDICTED: AP-3 complex subunit sigma-like [Cucumis melo])

HSP 1 Score: 71.6 bits (174), Expect = 2.0e-09
Identity = 33/37 (89.19%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 70  NYKINAYTKADLQCTNAYTKEVESCLPSDANINNVVK 107
           NYK NAYTKADLQC NAYTKEVESC PSDANINNV K
Sbjct: 101 NYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAK 137

[Close]
BLAST of MELO3C035498.2.1 vs. NCBI nr
Match: XP_008465395.1 (PREDICTED: uncharacterized protein LOC103503025 isoform X1 [Cucumis melo])

HSP 1 Score: 57.0 bits (136), Expect = 5.0e-05
Identity = 27/37 (72.97%), Postives = 29/37 (78.38%), Query Frame = 0 

Query: 82  QCTNAYTKEVESCLPSDANINNVVKIGSVVGGTYFGS 119
           +C   + KEVESCLPS ANINNVVKIGS VGG YF S
Sbjct: 77  ECYTKHGKEVESCLPSYANINNVVKIGSAVGGNYFSS 113

[Close]
BLAST of MELO3C035498.2.1 vs. TrEMBL
Match: tr|A0A1S3CL75|A0A1S3CL75_CUCME (AP-3 complex subunit sigma-like OS=Cucumis melo OX=3656 GN=LOC103502239 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.3e-09
Identity = 33/37 (89.19%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 70  NYKINAYTKADLQCTNAYTKEVESCLPSDANINNVVK 107
           NYK NAYTKADLQC NAYTKEVESC PSDANINNV K
Sbjct: 101 NYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAK 137

[Close]
BLAST of MELO3C035498.2.1 vs. TrEMBL
Match: tr|A0A1S3CQA2|A0A1S3CQA2_CUCME (uncharacterized protein LOC103503025 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503025 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.3e-05
Identity = 27/37 (72.97%), Postives = 29/37 (78.38%), Query Frame = 0 

Query: 82  QCTNAYTKEVESCLPSDANINNVVKIGSVVGGTYFGS 119
           +C   + KEVESCLPS ANINNVVKIGS VGG YF S
Sbjct: 77  ECYTKHGKEVESCLPSYANINNVVKIGSAVGGNYFSS 113

The following BLAST results are available for this feature:
BLAST of MELO3C035498.2.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008464326.12.0e-0989.19PREDICTED: AP-3 complex subunit sigma-like [Cucumis melo][more]
XP_008465395.15.0e-0572.97PREDICTED: uncharacterized protein LOC103503025 isoform X1 [Cucumis melo][more]
BLAST of MELO3C035498.2.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C035498.2.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C035498.2.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CL75|A0A1S3CL75_CUCME1.3e-0989.19AP-3 complex subunit sigma-like OS=Cucumis melo OX=3656 GN=LOC103502239 PE=4 SV=... [more]
tr|A0A1S3CQA2|A0A1S3CQA2_CUCME3.3e-0572.97uncharacterized protein LOC103503025 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0015031 protein transport
biological_process GO:0006810 transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0030123 AP-3 adaptor complex
cellular_component GO:0030117 membrane coat
molecular_function GO:0008565 protein transporter activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C035498.2MELO3C035498.2gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C035498.2.1MELO3C035498.2.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C035498.2.1.CDS.1MELO3C035498.2.1.CDS.1CDS
MELO3C035498.2.1.CDS.2MELO3C035498.2.1.CDS.2CDS
MELO3C035498.2.1.CDS.3MELO3C035498.2.1.CDS.3CDS
MELO3C035498.2.1.CDS.4MELO3C035498.2.1.CDS.4CDS
MELO3C035498.2.1.CDS.5MELO3C035498.2.1.CDS.5CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C035498.2.1.exon.1MELO3C035498.2.1.exon.1exon
MELO3C035498.2.1.exon.2MELO3C035498.2.1.exon.2exon
MELO3C035498.2.1.exon.3MELO3C035498.2.1.exon.3exon
MELO3C035498.2.1.exon.4MELO3C035498.2.1.exon.4exon
MELO3C035498.2.1.exon.5MELO3C035498.2.1.exon.5exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C035498.2.1.three_prime_UTR.1MELO3C035498.2.1.three_prime_UTR.1three_prime_UTR