MELO3C035498.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C035498.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionAP-3 complex subunit sigma-like
Locationchr12 : 6757721 .. 6759107 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGTTATAGAAGTAGTAGTGAAGAAAAAGAAACTGCTTAAACATCACACACTACGTATACTTTTCTTTATTTTAAAGTTTTTTGTAATTTTCTTTTTTAATGATGTATAGATTTCAACTGCATCTTTGTTGAATTATCATACACCATAGAATCTGAAGAAGAAGGAAGTTCTGGAGCTGAGGAGTTCTGGCTTTTTTTCCAGGTTAATTCTCTCTTCTGTTGGTTTCTTTTTTTTTTTTTCGGCTACCGGGACGGTGGCGACTTCTATGAGAATTTTGTTGTCTGTATTTCTTCCATCGAGATCTTCTCCGACTTTTTTTGTTTTTCTTTAATTAATGGGGTTTTTGTTTAGGAATGAATGTTAGGTTTTCACGATGTGGGTGTTAATTTTTTGTGTATAATCATGTTTAAATTTTGTCTATTTGGGGTGAAATGGGTGTAGTTTGCTGGCTTTTTGTTTATGTATTCGAGATAATTATTGTTCTTTGGTTATTCTTTTTTGTTTATTGTAGTCTGATTTTTTGGGCTTTTTTTTTTTTTTATTTGAGACTGTATATTGAGGAACTGAAGGAGAAAGGAGAGTTACAGAGTGGGGAAGAGGGAAATTCGGGTGTTATTGTTAGTAATTTGGAGAAGAGCATTTTAGTTCTTTCAGGTTCAAGAAGTAAAGCTCGACCAACTAAAGAGGATGACAATCTTTGGGGTTCCATAGCCTGTTTATGCTTTGTTGCTTTGGATGTTTCTTTAGCTTGTTTTTCTTTTGATGTTTAATTTGAGCCTCAAGAAATTAGTTGTTCATTTACTTGAGTTGGTGATTTTCTAATGCAGAATTACAAAATAAATGCATATACAAAAGCAGACTTGCAATGCACAAATGCATATACAAAAGAGGTTGAGAGTTGCTTGCCTTCTGATGCAAATATCAATAATGTTGTGAAGGTATTTTAGATTTTATTTGTCTTTGTCTTGAATTAAGGACTATTTTTGTGGTTAGTTTCTGACGGGCACCGTTTGGTCTATTAAAAAAACAATGTAAAGTATTAATGATCAGCTGTGTTGATGATTCTGGTGGTCTGGAAGCAACTCTAGGCATTAAATTCATTATGGTTGTTGGAGAATAGAAACTGTGATTTTATTTGTGTAGTATGATCATGTTACTCTTAATTGTTGCTAGTTGATTTCTTTGACTGAATAAATTTTGAACATACTTTGTTGTTGTGATGTTATCTACTTTTTGTAGATTGGCTCTGTAGTTGGTGGTACTTATTTTGGCTCATGAATTGGAGGTAGTAGAGGATGCAGAATGCAAGTTTATTTGAAGCTAAGTTTCATTCAAGGTCATTGAGTTGGGTTGATAGAAGTAATGTTTTGTATATGACAATA

mRNA sequence

ATGAAAGTTATAGAAGTAGTAGTGAAGAAAAAGAAACTGCTTAAACATCACACACTACATTTCAACTGCATCTTTGTTGAATTATCATACACCATAGAATCTGAAGAAGAAGGAAGTTCTGGAGCTGAGGAGTTCTGGCTTTTTTTCCAGGAACTGAAGGAGAAAGGAGAGTTACAGAGTGGGGAAGAGGGAAATTCGGGTGTTATTAATTACAAAATAAATGCATATACAAAAGCAGACTTGCAATGCACAAATGCATATACAAAAGAGGTTGAGAGTTGCTTGCCTTCTGATGCAAATATCAATAATGTTGTGAAGATTGGCTCTGTAGTTGGTGGTACTTATTTTGGCTCATGAATTGGAGGTAGTAGAGGATGCAGAATGCAAGTTTATTTGAAGCTAAGTTTCATTCAAGGTCATTGAGTTGGGTTGATAGAAGTAATGTTTTGTATATGACAATA

Coding sequence (CDS)

ATGAAAGTTATAGAAGTAGTAGTGAAGAAAAAGAAACTGCTTAAACATCACACACTACATTTCAACTGCATCTTTGTTGAATTATCATACACCATAGAATCTGAAGAAGAAGGAAGTTCTGGAGCTGAGGAGTTCTGGCTTTTTTTCCAGGAACTGAAGGAGAAAGGAGAGTTACAGAGTGGGGAAGAGGGAAATTCGGGTGTTATTAATTACAAAATAAATGCATATACAAAAGCAGACTTGCAATGCACAAATGCATATACAAAAGAGGTTGAGAGTTGCTTGCCTTCTGATGCAAATATCAATAATGTTGTGAAGATTGGCTCTGTAGTTGGTGGTACTTATTTTGGCTCATGA

Protein sequence

MKVIEVVVKKKKLLKHHTLHFNCIFVELSYTIESEEEGSSGAEEFWLFFQELKEKGELQSGEEGNSGVINYKINAYTKADLQCTNAYTKEVESCLPSDANINNVVKIGSVVGGTYFGS
Homology
[Close]
BLAST of MELO3C035498.2 vs. NCBI nr
Match: XP_008464326.1 (PREDICTED: AP-3 complex subunit sigma-like [Cucumis melo])

HSP 1 Score: 71.6 bits (174), Expect = 2.0e-09
Identity = 33/37 (89.19%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 70  NYKINAYTKADLQCTNAYTKEVESCLPSDANINNVVK 107
           NYK NAYTKADLQC NAYTKEVESC PSDANINNV K
Sbjct: 101 NYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAK 137

[Close]
BLAST of MELO3C035498.2 vs. NCBI nr
Match: XP_008465395.1 (PREDICTED: uncharacterized protein LOC103503025 isoform X1 [Cucumis melo])

HSP 1 Score: 57.0 bits (136), Expect = 5.0e-05
Identity = 27/37 (72.97%), Postives = 29/37 (78.38%), Query Frame = 0 

Query: 82  QCTNAYTKEVESCLPSDANINNVVKIGSVVGGTYFGS 119
           +C   + KEVESCLPS ANINNVVKIGS VGG YF S
Sbjct: 77  ECYTKHGKEVESCLPSYANINNVVKIGSAVGGNYFSS 113

[Close]
BLAST of MELO3C035498.2 vs. TrEMBL
Match: tr|A0A1S3CL75|A0A1S3CL75_CUCME (AP-3 complex subunit sigma-like OS=Cucumis melo OX=3656 GN=LOC103502239 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.3e-09
Identity = 33/37 (89.19%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 70  NYKINAYTKADLQCTNAYTKEVESCLPSDANINNVVK 107
           NYK NAYTKADLQC NAYTKEVESC PSDANINNV K
Sbjct: 101 NYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAK 137

[Close]
BLAST of MELO3C035498.2 vs. TrEMBL
Match: tr|A0A1S3CQA2|A0A1S3CQA2_CUCME (uncharacterized protein LOC103503025 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503025 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.3e-05
Identity = 27/37 (72.97%), Postives = 29/37 (78.38%), Query Frame = 0 

Query: 82  QCTNAYTKEVESCLPSDANINNVVKIGSVVGGTYFGS 119
           +C   + KEVESCLPS ANINNVVKIGS VGG YF S
Sbjct: 77  ECYTKHGKEVESCLPSYANINNVVKIGSAVGGNYFSS 113

The following BLAST results are available for this feature:
BLAST of MELO3C035498.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008464326.12.0e-0989.19PREDICTED: AP-3 complex subunit sigma-like [Cucumis melo][more]
XP_008465395.15.0e-0572.97PREDICTED: uncharacterized protein LOC103503025 isoform X1 [Cucumis melo][more]
BLAST of MELO3C035498.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C035498.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C035498.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CL75|A0A1S3CL75_CUCME1.3e-0989.19AP-3 complex subunit sigma-like OS=Cucumis melo OX=3656 GN=LOC103502239 PE=4 SV=... [more]
tr|A0A1S3CQA2|A0A1S3CQA2_CUCME3.3e-0572.97uncharacterized protein LOC103503025 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0015031 protein transport
biological_process GO:0006810 transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0030123 AP-3 adaptor complex
cellular_component GO:0030117 membrane coat
molecular_function GO:0008565 protein transporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035498.2.1MELO3C035498.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C035498.2Watermelon (97103) v2medwmbB142
MELO3C035498.2Wax gourdmedwgoB176
MELO3C035498.2Cucumber (Gy14) v2cgybmedB009
MELO3C035498.2Cucurbita maxima (Rimu)cmamedB215
MELO3C035498.2Cucurbita maxima (Rimu)cmamedB451
MELO3C035498.2Cucurbita moschata (Rifu)cmomedB203
MELO3C035498.2Cucurbita moschata (Rifu)cmomedB439
MELO3C035498.2Cucurbita pepo (Zucchini)cpemedB563
MELO3C035498.2Cucurbita pepo (Zucchini)cpemedB583
MELO3C035498.2Wild cucumber (PI 183967)cpimedB011
MELO3C035498.2Cucumber (Chinese Long) v2cumedB010
MELO3C035498.2Cucumber (Chinese Long) v2cumedB173
MELO3C035498.2Melon (DHL92) v3.6.1medmedB072
MELO3C035498.2Bottle gourd (USVL1VR-Ls)lsimedB255
MELO3C035498.2Watermelon (Charleston Gray)medwcgB141
MELO3C035498.2Watermelon (97103) v1medwmB143
MELO3C035498.2Silver-seed gourdcarmedB0452
MELO3C035498.2Cucumber (Chinese Long) v3cucmedB009