MELO3C035347.2.1 (mRNA) Melon (DHL92) v3.6.1

Overview
NameMELO3C035347.2.1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptiongirdin-like
Locationchr12 : 6329322 .. 6330219 (+)
Sequence length898
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATTTGGGATCCAAAAAATCCAAGGAAGGAGGCTTGCTTGTCTTTCTTTGCAAAATTGACTTCTGAAAATGTCATATGGAAGGCTCAATGGATGCCTTTGGAGGCGGTGATATATAGATGCAGAGATTTTCACAATGTGCCTTTCTTGGGACTATGGGGAGGTGTTATACACCATTGTTAGTTTTGCGTCAGGTGTGGCTCAAACAGTTTATACCACCAACTTATAATCTGCAAGAATCTGATTTTTCATACGATTCTGAAGATTGTCAAGGAAAAAACGTCGAGCAGTATGCGCATGAAAATCTGTAAGGAAGATAAAAGACAAAGGACATTACGAAGGAGTTACTGGCGGGTACGAGACATGGCAGGCAAACAGAAGGAAGAATATAATAGATATCTCAAGGAAGGTAGTTGAAAGGGGAAAAGAGACGAGCTTCGAACAACCAAATCAATGGATTGAGAAGAGCATAAAACTAGAAGAGAAAAATCGACTGTTAGAGCAAGAGAACGAGAAACTTCGTAAAGAGACAAGTCAATGGATGGATCATGCAACTTATTTGCAAAACAAACTCGAAAAGATTAAGAGTTTCTTAAAAAAATCAAGATAAGTTAGAAAAGAATCTTGAGACGTTAGATAAGGAGATGAGGCGAATGAATAAAGCAAATAGAAGTTTGAAAAATGAAAAGACAATATTACAAGCAATAGTAGGGTCGCAAGATGAATATATTAAAGATTTAGAAAGTGTGAAGGAATATTTTCTCGAGCTTGTAAATGATTTGAATACATCAATTGGAAAATGAGAAACACAAATAATGGATTTGGAAGCACACAATCATTCTTTGCGTCAAACTGTTGATAACCTACATCTGAAGATGGTCGAGTGCTCTGAAGA

mRNA sequence

ATGGCAATTTGGGATCCAAAAAATCCAAGGAAGGAGGCTTGCTTGTCTTTCTTTGCAAAATTGACTTCTGAAAATGTCATATGGAAGGCTCAATGGATGCCTTTGGAGGCGGTGATATATAGATGCAGAGATTTTCACAATGTGCCTTTCTTGGGACTATGGGGAGGTGTTATACACCATTGTTAGTTTTGCGTCAGGTGTGGCTCAAACAGTTTATACCACCAACTTATAATCTGCAAGAATCTGATTTTTCATACGATTCTGAAGATTGTCAAGGAAAAAACGTCGAGCAGTATGCGCATGAAAATCTGTAAGGAAGATAAAAGACAAAGGACATTACGAAGGAGTTACTGGCGGGTACGAGACATGGCAGGCAAACAGAAGGAAGAATATAATAGATATCTCAAGGAAGGTAGTTGAAAGGGGAAAAGAGACGAGCTTCGAACAACCAAATCAATGGATTGAGAAGAGCATAAAACTAGAAGAGAAAAATCGACTGTTAGAGCAAGAGAACGAGAAACTTCGTAAAGAGACAAGTCAATGGATGGATCATGCAACTTATTTGCAAAACAAACTCGAAAAGATTAAGAGTTTCTTAAAAAAATCAAGATAAGTTAGAAAAGAATCTTGAGACGTTAGATAAGGAGATGAGGCGAATGAATAAAGCAAATAGAAGTTTGAAAAATGAAAAGACAATATTACAAGCAATAGTAGGGTCGCAAGATGAATATATTAAAGATTTAGAAAGTGTGAAGGAATATTTTCTCGAGCTTGTAAATGATTTGAATACATCAATTGGAAAATGAGAAACACAAATAATGGATTTGGAAGCACACAATCATTCTTTGCGTCAAACTGTTGATAACCTACATCTGAAGATGGTCGAGTGCTCTGAAGA

Coding sequence (CDS)

ATGCAGAGATTTTCACAATGTGCCTTTCTTGGGACTATGGGGAGGTGTTATACACCATTGTTAGTTTTGCGTCAGGTGTGGCTCAAACAGTTTATACCACCAACTTATAATCTGCAAGAATCTGATTTTTCATACGATTCTGAAGATTGTCAAGGAAAAAACGTCGAGCAGTATGCGCATGAAAATCTGTAA

Protein sequence

MQRFSQCAFLGTMGRCYTPLLVLRQVWLKQFIPPTYNLQESDFSYDSEDCQGKNVEQYAHENL
Homology
[Close]
BLAST of MELO3C035347.2.1 vs. NCBI nr
Match: XP_016900531.1 (PREDICTED: girdin-like [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 2.5e-11
Identity = 38/51 (74.51%), Postives = 39/51 (76.47%), Query Frame = 0 

Query: 4  FSQCAFLGTMGRC-YTPLLVLRQVWLKQFIPPTYNLQESDFSYDSEDCQGK 54
          F     LG  G   Y PLLVLRQVWLKQFIPPT+NLQESDFSYD EDCQGK
Sbjct: 13 FHSVPLLGPWGGVNYLPLLVLRQVWLKQFIPPTHNLQESDFSYDLEDCQGK 63

[Close]
BLAST of MELO3C035347.2.1 vs. NCBI nr
Match: XP_022147190.1 (uncharacterized protein LOC111016201 [Momordica charantia])

HSP 1 Score: 53.9 bits (128), Expect = 2.3e-04
Identity = 24/52 (46.15%), Postives = 36/52 (69.23%), Query Frame = 0 

Query: 3   RFSQCAFLGTMG-RCYTPLLVLRQVWLKQFIPPTYNLQESDFSYDSEDCQGK 54
           +F   + LG  G   Y PL+VLRQ+W++QFIP T++L+ S+F+YD   C+ K
Sbjct: 336 KFHSLSLLGPWGCVSYAPLMVLRQIWVRQFIPATHDLRNSEFAYDIGFCKNK 387

[Close]
BLAST of MELO3C035347.2.1 vs. NCBI nr
Match: XP_022150759.1 (uncharacterized protein LOC111018820 [Momordica charantia])

HSP 1 Score: 53.9 bits (128), Expect = 2.3e-04
Identity = 24/52 (46.15%), Postives = 35/52 (67.31%), Query Frame = 0 

Query: 3   RFSQCAFLGTMG-RCYTPLLVLRQVWLKQFIPPTYNLQESDFSYDSEDCQGK 54
           +F     LG  G   Y PL+VLRQ+W++QFIP T++L+ S+F+YD   C+ K
Sbjct: 228 KFHSLPLLGPCGCVSYAPLMVLRQIWVRQFIPATHDLRNSEFAYDVRFCKNK 279

[Close]
BLAST of MELO3C035347.2.1 vs. TrEMBL
Match: tr|A0A1S4DX26|A0A1S4DX26_CUCME (girdin-like OS=Cucumis melo OX=3656 GN=LOC107990936 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.7e-11
Identity = 38/51 (74.51%), Postives = 39/51 (76.47%), Query Frame = 0 

Query: 4  FSQCAFLGTMGRC-YTPLLVLRQVWLKQFIPPTYNLQESDFSYDSEDCQGK 54
          F     LG  G   Y PLLVLRQVWLKQFIPPT+NLQESDFSYD EDCQGK
Sbjct: 13 FHSVPLLGPWGGVNYLPLLVLRQVWLKQFIPPTHNLQESDFSYDLEDCQGK 63

The following BLAST results are available for this feature:
BLAST of MELO3C035347.2.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016900531.12.5e-1174.51PREDICTED: girdin-like [Cucumis melo][more]
XP_022147190.12.3e-0446.15uncharacterized protein LOC111016201 [Momordica charantia][more]
XP_022150759.12.3e-0446.15uncharacterized protein LOC111018820 [Momordica charantia][more]
BLAST of MELO3C035347.2.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C035347.2.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C035347.2.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DX26|A0A1S4DX26_CUCME1.7e-1174.51girdin-like OS=Cucumis melo OX=3656 GN=LOC107990936 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C035347.2MELO3C035347.2gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C035347.2.1.exon.1MELO3C035347.2.1.exon.1exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C035347.2.1.five_prime_UTR.1MELO3C035347.2.1.five_prime_UTR.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C035347.2.1.CDS.1MELO3C035347.2.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C035347.2.1.three_prime_UTR.1MELO3C035347.2.1.three_prime_UTR.1three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C035347.2.1MELO3C035347.2.1-proteinpolypeptide