MELO3C035347.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C035347.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptiongirdin-like
Locationchr12 : 6329322 .. 6330219 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATTTGGGATCCAAAAAATCCAAGGAAGGAGGCTTGCTTGTCTTTCTTTGCAAAATTGACTTCTGAAAATGTCATATGGAAGGCTCAATGGATGCCTTTGGAGGCGGTGATATATAGATGCAGAGATTTTCACAATGTGCCTTTCTTGGGACTATGGGGAGGTGTTATACACCATTGTTAGTTTTGCGTCAGGTGTGGCTCAAACAGTTTATACCACCAACTTATAATCTGCAAGAATCTGATTTTTCATACGATTCTGAAGATTGTCAAGGAAAAAACGTCGAGCAGTATGCGCATGAAAATCTGTAAGGAAGATAAAAGACAAAGGACATTACGAAGGAGTTACTGGCGGGTACGAGACATGGCAGGCAAACAGAAGGAAGAATATAATAGATATCTCAAGGAAGGTAGTTGAAAGGGGAAAAGAGACGAGCTTCGAACAACCAAATCAATGGATTGAGAAGAGCATAAAACTAGAAGAGAAAAATCGACTGTTAGAGCAAGAGAACGAGAAACTTCGTAAAGAGACAAGTCAATGGATGGATCATGCAACTTATTTGCAAAACAAACTCGAAAAGATTAAGAGTTTCTTAAAAAAATCAAGATAAGTTAGAAAAGAATCTTGAGACGTTAGATAAGGAGATGAGGCGAATGAATAAAGCAAATAGAAGTTTGAAAAATGAAAAGACAATATTACAAGCAATAGTAGGGTCGCAAGATGAATATATTAAAGATTTAGAAAGTGTGAAGGAATATTTTCTCGAGCTTGTAAATGATTTGAATACATCAATTGGAAAATGAGAAACACAAATAATGGATTTGGAAGCACACAATCATTCTTTGCGTCAAACTGTTGATAACCTACATCTGAAGATGGTCGAGTGCTCTGAAGA

mRNA sequence

ATGGCAATTTGGGATCCAAAAAATCCAAGGAAGGAGGCTTGCTTGTCTTTCTTTGCAAAATTGACTTCTGAAAATGTCATATGGAAGGCTCAATGGATGCCTTTGGAGGCGGTGATATATAGATGCAGAGATTTTCACAATGTGCCTTTCTTGGGACTATGGGGAGGTGTTATACACCATTGTTAGTTTTGCGTCAGGTGTGGCTCAAACAGTTTATACCACCAACTTATAATCTGCAAGAATCTGATTTTTCATACGATTCTGAAGATTGTCAAGGAAAAAACGTCGAGCAGTATGCGCATGAAAATCTGTAAGGAAGATAAAAGACAAAGGACATTACGAAGGAGTTACTGGCGGGTACGAGACATGGCAGGCAAACAGAAGGAAGAATATAATAGATATCTCAAGGAAGGTAGTTGAAAGGGGAAAAGAGACGAGCTTCGAACAACCAAATCAATGGATTGAGAAGAGCATAAAACTAGAAGAGAAAAATCGACTGTTAGAGCAAGAGAACGAGAAACTTCGTAAAGAGACAAGTCAATGGATGGATCATGCAACTTATTTGCAAAACAAACTCGAAAAGATTAAGAGTTTCTTAAAAAAATCAAGATAAGTTAGAAAAGAATCTTGAGACGTTAGATAAGGAGATGAGGCGAATGAATAAAGCAAATAGAAGTTTGAAAAATGAAAAGACAATATTACAAGCAATAGTAGGGTCGCAAGATGAATATATTAAAGATTTAGAAAGTGTGAAGGAATATTTTCTCGAGCTTGTAAATGATTTGAATACATCAATTGGAAAATGAGAAACACAAATAATGGATTTGGAAGCACACAATCATTCTTTGCGTCAAACTGTTGATAACCTACATCTGAAGATGGTCGAGTGCTCTGAAGA

Coding sequence (CDS)

ATGCAGAGATTTTCACAATGTGCCTTTCTTGGGACTATGGGGAGGTGTTATACACCATTGTTAGTTTTGCGTCAGGTGTGGCTCAAACAGTTTATACCACCAACTTATAATCTGCAAGAATCTGATTTTTCATACGATTCTGAAGATTGTCAAGGAAAAAACGTCGAGCAGTATGCGCATGAAAATCTGTAA

Protein sequence

MQRFSQCAFLGTMGRCYTPLLVLRQVWLKQFIPPTYNLQESDFSYDSEDCQGKNVEQYAHENL
Homology
[Close]
BLAST of MELO3C035347.2 vs. NCBI nr
Match: XP_016900531.1 (PREDICTED: girdin-like [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 2.5e-11
Identity = 38/51 (74.51%), Postives = 39/51 (76.47%), Query Frame = 0 

Query: 4  FSQCAFLGTMGRC-YTPLLVLRQVWLKQFIPPTYNLQESDFSYDSEDCQGK 54
          F     LG  G   Y PLLVLRQVWLKQFIPPT+NLQESDFSYD EDCQGK
Sbjct: 13 FHSVPLLGPWGGVNYLPLLVLRQVWLKQFIPPTHNLQESDFSYDLEDCQGK 63

[Close]
BLAST of MELO3C035347.2 vs. NCBI nr
Match: XP_022147190.1 (uncharacterized protein LOC111016201 [Momordica charantia])

HSP 1 Score: 53.9 bits (128), Expect = 2.3e-04
Identity = 24/52 (46.15%), Postives = 36/52 (69.23%), Query Frame = 0 

Query: 3   RFSQCAFLGTMG-RCYTPLLVLRQVWLKQFIPPTYNLQESDFSYDSEDCQGK 54
           +F   + LG  G   Y PL+VLRQ+W++QFIP T++L+ S+F+YD   C+ K
Sbjct: 336 KFHSLSLLGPWGCVSYAPLMVLRQIWVRQFIPATHDLRNSEFAYDIGFCKNK 387

[Close]
BLAST of MELO3C035347.2 vs. NCBI nr
Match: XP_022150759.1 (uncharacterized protein LOC111018820 [Momordica charantia])

HSP 1 Score: 53.9 bits (128), Expect = 2.3e-04
Identity = 24/52 (46.15%), Postives = 35/52 (67.31%), Query Frame = 0 

Query: 3   RFSQCAFLGTMG-RCYTPLLVLRQVWLKQFIPPTYNLQESDFSYDSEDCQGK 54
           +F     LG  G   Y PL+VLRQ+W++QFIP T++L+ S+F+YD   C+ K
Sbjct: 228 KFHSLPLLGPCGCVSYAPLMVLRQIWVRQFIPATHDLRNSEFAYDVRFCKNK 279

[Close]
BLAST of MELO3C035347.2 vs. TrEMBL
Match: tr|A0A1S4DX26|A0A1S4DX26_CUCME (girdin-like OS=Cucumis melo OX=3656 GN=LOC107990936 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.7e-11
Identity = 38/51 (74.51%), Postives = 39/51 (76.47%), Query Frame = 0 

Query: 4  FSQCAFLGTMGRC-YTPLLVLRQVWLKQFIPPTYNLQESDFSYDSEDCQGK 54
          F     LG  G   Y PLLVLRQVWLKQFIPPT+NLQESDFSYD EDCQGK
Sbjct: 13 FHSVPLLGPWGGVNYLPLLVLRQVWLKQFIPPTHNLQESDFSYDLEDCQGK 63

The following BLAST results are available for this feature:
BLAST of MELO3C035347.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016900531.12.5e-1174.51PREDICTED: girdin-like [Cucumis melo][more]
XP_022147190.12.3e-0446.15uncharacterized protein LOC111016201 [Momordica charantia][more]
XP_022150759.12.3e-0446.15uncharacterized protein LOC111018820 [Momordica charantia][more]
BLAST of MELO3C035347.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C035347.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C035347.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DX26|A0A1S4DX26_CUCME1.7e-1174.51girdin-like OS=Cucumis melo OX=3656 GN=LOC107990936 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035347.2.1MELO3C035347.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C035347.2Cucumber (Gy14) v2cgybmedB009
MELO3C035347.2Cucurbita maxima (Rimu)cmamedB215
MELO3C035347.2Cucurbita maxima (Rimu)cmamedB451
MELO3C035347.2Cucurbita moschata (Rifu)cmomedB203
MELO3C035347.2Cucurbita moschata (Rifu)cmomedB439
MELO3C035347.2Cucurbita pepo (Zucchini)cpemedB563
MELO3C035347.2Cucurbita pepo (Zucchini)cpemedB583
MELO3C035347.2Wild cucumber (PI 183967)cpimedB011
MELO3C035347.2Cucumber (Chinese Long) v2cumedB010
MELO3C035347.2Cucumber (Chinese Long) v2cumedB173
MELO3C035347.2Melon (DHL92) v3.6.1medmedB072
MELO3C035347.2Bottle gourd (USVL1VR-Ls)lsimedB255
MELO3C035347.2Watermelon (Charleston Gray)medwcgB141
MELO3C035347.2Watermelon (97103) v1medwmB143
MELO3C035347.2Silver-seed gourdcarmedB0452
MELO3C035347.2Silver-seed gourdcarmedB1052
MELO3C035347.2Cucumber (Chinese Long) v3cucmedB009
MELO3C035347.2Watermelon (97103) v2medwmbB142
MELO3C035347.2Wax gourdmedwgoB176