MELO3C035344.2.1 (mRNA) Melon (DHL92) v3.6.1

Overview
NameMELO3C035344.2.1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptiongirdin-like
Locationchr12 : 6329335 .. 6330582 (+)
Sequence length1248
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCCAAAAAATCCAAGGAAGGAGGCTTGCTTGTCTTTCTTTGCAAAATTGACTTCTGAAAATGTCATATGGAAGGCTCAATGGATGCCTTTGGAGGCGGTGATATATAGATGCAGAGATTTTCACAATGTGCCTTTCTTGGGACTATGGGGAGGTGTTATACACCATTGTTAGTTTTGCGTCAGGTGTGGCTCAAACAGTTTATACCACCAACTTATAATCTGCAAGAATCTGATTTTTCATACGATTCTGAAGATTGTCAAGGAAAAAACGTCGAGCAGTATGCGCATGAAAATCTGTAAGGAAGATAAAAGACAAAGGACATTACGAAGGAGTTACTGGCGGGTACGAGACATGGCAGGCAAACAGAAGGAAGAATATAATAGATATCTCAAGGAAGGTAGTTGAAAGGGGAAAAGAGACGAGCTTCGAACAACCAAATCAATGGATTGAGAAGAGCATAAAACTAGAAGAGAAAAATCGACTGTTAGAGCAAGAGAACGAGAAACTTCGTAAAGAGACAAGTCAATGGATGGATCATGCAACTTATTTGCAAAACAAACTCGAAAAGATTAAGAGTTTCTTAAAAAAATCAAGATAAGTTAGAAAAGAATCTTGAGACGTTAGATAAGGAGATGAGGCGAATGAATAAAGCAAATAGAAGTTTGAAAAATGAAAAGACAATATTACAAGCAATAGTAGGGTCGCAAGATGAATATATTAAAGATTTAGAAAGTGTGAAGGAATATTTTCTCGAGCTTGTAAATGATTTGAATACATCAATTGGAAAATGAGAAACACAAATAATGGATTTGGAAGCACACAATCATTCTTTGCGTCAAACTGTTGATAACCTACATCTGAAGATGGTCGAGTGCTCTGAAGAGTATGAGATACTAAAAAATTATGCCGATTTCTTACACTATCAACTTGCTACATTTCAAAATTCAaGTAAGAGGATAATGCAAGAATATGAGTCATTGAAGACGAATTACGTGCAAATGAAGGTTGATTATGATCTGCAAACAAGAGATTTCCAAGTGCTAATGGAACGTGTAGATCTGACGATTGAATTTCTCAGAATGGTGTCCGAAAGAGCAAATGATTTTGCAGAATGGGCAGCTGATTTGAAGGTTAATTTTTCCTCAATGCAACCTCATGCAGATGATCTAAATAGATTCTTGAAGATGATATGCAGAGAACTCGGGACATTTTGGTCGTTTTCATTAATTGTTCATTTTGCTATTGA

mRNA sequence

ATCCAAAAAATCCAAGGAAGGAGGCTTGCTTGTCTTTCTTTGCAAAATTGACTTCTGAAAATGTCATATGGAAGGCTCAATGGATGCCTTTGGAGGCGGTGATATATAGATGCAGAGATTTTCACAATGTGCCTTTCTTGGGACTATGGGGAGGTGTTATACACCATTGTTAGTTTTGCGTCAGGTGTGGCTCAAACAGTTTATACCACCAACTTATAATCTGCAAGAATCTGATTTTTCATACGATTCTGAAGATTGTCAAGGAAAAAACGTCGAGCAGTATGCGCATGAAAATCTGTAAGGAAGATAAAAGACAAAGGACATTACGAAGGAGTTACTGGCGGGTACGAGACATGGCAGGCAAACAGAAGGAAGAATATAATAGATATCTCAAGGAAGGTAGTTGAAAGGGGAAAAGAGACGAGCTTCGAACAACCAAATCAATGGATTGAGAAGAGCATAAAACTAGAAGAGAAAAATCGACTGTTAGAGCAAGAGAACGAGAAACTTCGTAAAGAGACAAGTCAATGGATGGATCATGCAACTTATTTGCAAAACAAACTCGAAAAGATTAAGAGTTTCTTAAAAAAATCAAGATAAGTTAGAAAAGAATCTTGAGACGTTAGATAAGGAGATGAGGCGAATGAATAAAGCAAATAGAAGTTTGAAAAATGAAAAGACAATATTACAAGCAATAGTAGGGTCGCAAGATGAATATATTAAAGATTTAGAAAGTGTGAAGGAATATTTTCTCGAGCTTGTAAATGATTTGAATACATCAATTGGAAAATGAGAAACACAAATAATGGATTTGGAAGCACACAATCATTCTTTGCGTCAAACTGTTGATAACCTACATCTGAAGATGGTCGAGTGCTCTGAAGAGTATGAGATACTAAAAAATTATGCCGATTTCTTACACTATCAACTTGCTACATTTCAAAATTCAaGTAAGAGGATAATGCAAGAATATGAGTCATTGAAGACGAATTACGTGCAAATGAAGGTTGATTATGATCTGCAAACAAGAGATTTCCAAGTGCTAATGGAACGTGTAGATCTGACGATTGAATTTCTCAGAATGGTGTCCGAAAGAGCAAATGATTTTGCAGAATGGGCAGCTGATTTGAAGGTTAATTTTTCCTCAATGCAACCTCATGCAGATGATCTAAATAGATTCTTGAAGATGATATGCAGAGAACTCGGGACATTTTGGTCGTTTTCATTAATTGTTCATTTTGCTATTGA

Coding sequence (CDS)

ATGGATTTGGAAGCACACAATCATTCTTTGCGTCAAACTGTTGATAACCTACATCTGAAGATGGTCGAGTGCTCTGAAGAGTATGAGATACTAAAAAATTATGCCGATTTCTTACACTATCAACTTGCTACATTTCAAAATTCAaGTAAGAGGATAATGCAAGAATATGAGTCATTGAAGACGAATTACGTGCAAATGAAGGTTGATTATGATCTGCAAACAAGAGATTTCCAAGTGCTAATGGAACGTGTAGATCTGACGATTGAATTTCTCAGAATGGTGTCCGAAAGAGCAAATGATTTTGCAGAATGGGCAGCTGATTTGAAGGTTAATTTTTCCTCAATGCAACCTCATGCAGATGATCTAAATAGATTCTTGAAGATGATATGCAGAGAACTCGGGACATTTTGGTCGTTTTCATTAATTGTTCATTTTGCTATT

Protein sequence

MDLEAHNHSLRQTVDNLHLKMVECSEEYEILKNYADFLHYQLATFQNSSKRIMQEYESLKTNYVQMKVDYDLQTRDFQVLMERVDLTIEFLRMVSERANDFAEWAADLKVNFSSMQPHADDLNRFLKMICRELGTFWSFSLIVHFAI
Homology
[Close]
BLAST of MELO3C035344.2.1 vs. NCBI nr
Match: XP_016900531.1 (PREDICTED: girdin-like [Cucumis melo])

HSP 1 Score: 132.9 bits (333), Expect = 9.0e-28
Identity = 64/79 (81.01%), Postives = 72/79 (91.14%), Query Frame = 0 

Query: 61  TNYVQMKVDYDLQTRDFQVLMERVDLTIEFLRMVSERANDFAEWAADLKVNFSSMQPHAD 120
           T+YVQMKVDYDLQTRDFQVL+ER+D TI+FLRMVS+RAN FAEWAADL+VNF S+Q HAD
Sbjct: 303 TDYVQMKVDYDLQTRDFQVLVERIDQTIKFLRMVSKRANVFAEWAADLRVNFFSLQSHAD 362

Query: 121 DLNRFLKMICRELGTFWSF 140
           DLNRFLKMIC+ELG F  F
Sbjct: 363 DLNRFLKMICKELGHFGRF 381

[Close]
BLAST of MELO3C035344.2.1 vs. TrEMBL
Match: tr|A0A1S4DX26|A0A1S4DX26_CUCME (girdin-like OS=Cucumis melo OX=3656 GN=LOC107990936 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.9e-28
Identity = 64/79 (81.01%), Postives = 72/79 (91.14%), Query Frame = 0 

Query: 61  TNYVQMKVDYDLQTRDFQVLMERVDLTIEFLRMVSERANDFAEWAADLKVNFSSMQPHAD 120
           T+YVQMKVDYDLQTRDFQVL+ER+D TI+FLRMVS+RAN FAEWAADL+VNF S+Q HAD
Sbjct: 303 TDYVQMKVDYDLQTRDFQVLVERIDQTIKFLRMVSKRANVFAEWAADLRVNFFSLQSHAD 362

Query: 121 DLNRFLKMICRELGTFWSF 140
           DLNRFLKMIC+ELG F  F
Sbjct: 363 DLNRFLKMICKELGHFGRF 381

The following BLAST results are available for this feature:
BLAST of MELO3C035344.2.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016900531.19.0e-2881.01PREDICTED: girdin-like [Cucumis melo][more]
BLAST of MELO3C035344.2.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C035344.2.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C035344.2.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DX26|A0A1S4DX26_CUCME5.9e-2881.01girdin-like OS=Cucumis melo OX=3656 GN=LOC107990936 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C035344.2MELO3C035344.2gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C035344.2.1.exon.1MELO3C035344.2.1.exon.1exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C035344.2.1.five_prime_UTR.1MELO3C035344.2.1.five_prime_UTR.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C035344.2.1.CDS.1MELO3C035344.2.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C035344.2.1.three_prime_UTR.1MELO3C035344.2.1.three_prime_UTR.1three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C035344.2.1MELO3C035344.2.1-proteinpolypeptide