MELO3C035344.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C035344.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptiongirdin-like
Locationchr12 : 6329335 .. 6330582 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCCAAAAAATCCAAGGAAGGAGGCTTGCTTGTCTTTCTTTGCAAAATTGACTTCTGAAAATGTCATATGGAAGGCTCAATGGATGCCTTTGGAGGCGGTGATATATAGATGCAGAGATTTTCACAATGTGCCTTTCTTGGGACTATGGGGAGGTGTTATACACCATTGTTAGTTTTGCGTCAGGTGTGGCTCAAACAGTTTATACCACCAACTTATAATCTGCAAGAATCTGATTTTTCATACGATTCTGAAGATTGTCAAGGAAAAAACGTCGAGCAGTATGCGCATGAAAATCTGTAAGGAAGATAAAAGACAAAGGACATTACGAAGGAGTTACTGGCGGGTACGAGACATGGCAGGCAAACAGAAGGAAGAATATAATAGATATCTCAAGGAAGGTAGTTGAAAGGGGAAAAGAGACGAGCTTCGAACAACCAAATCAATGGATTGAGAAGAGCATAAAACTAGAAGAGAAAAATCGACTGTTAGAGCAAGAGAACGAGAAACTTCGTAAAGAGACAAGTCAATGGATGGATCATGCAACTTATTTGCAAAACAAACTCGAAAAGATTAAGAGTTTCTTAAAAAAATCAAGATAAGTTAGAAAAGAATCTTGAGACGTTAGATAAGGAGATGAGGCGAATGAATAAAGCAAATAGAAGTTTGAAAAATGAAAAGACAATATTACAAGCAATAGTAGGGTCGCAAGATGAATATATTAAAGATTTAGAAAGTGTGAAGGAATATTTTCTCGAGCTTGTAAATGATTTGAATACATCAATTGGAAAATGAGAAACACAAATAATGGATTTGGAAGCACACAATCATTCTTTGCGTCAAACTGTTGATAACCTACATCTGAAGATGGTCGAGTGCTCTGAAGAGTATGAGATACTAAAAAATTATGCCGATTTCTTACACTATCAACTTGCTACATTTCAAAATTCAaGTAAGAGGATAATGCAAGAATATGAGTCATTGAAGACGAATTACGTGCAAATGAAGGTTGATTATGATCTGCAAACAAGAGATTTCCAAGTGCTAATGGAACGTGTAGATCTGACGATTGAATTTCTCAGAATGGTGTCCGAAAGAGCAAATGATTTTGCAGAATGGGCAGCTGATTTGAAGGTTAATTTTTCCTCAATGCAACCTCATGCAGATGATCTAAATAGATTCTTGAAGATGATATGCAGAGAACTCGGGACATTTTGGTCGTTTTCATTAATTGTTCATTTTGCTATTGA

mRNA sequence

ATCCAAAAAATCCAAGGAAGGAGGCTTGCTTGTCTTTCTTTGCAAAATTGACTTCTGAAAATGTCATATGGAAGGCTCAATGGATGCCTTTGGAGGCGGTGATATATAGATGCAGAGATTTTCACAATGTGCCTTTCTTGGGACTATGGGGAGGTGTTATACACCATTGTTAGTTTTGCGTCAGGTGTGGCTCAAACAGTTTATACCACCAACTTATAATCTGCAAGAATCTGATTTTTCATACGATTCTGAAGATTGTCAAGGAAAAAACGTCGAGCAGTATGCGCATGAAAATCTGTAAGGAAGATAAAAGACAAAGGACATTACGAAGGAGTTACTGGCGGGTACGAGACATGGCAGGCAAACAGAAGGAAGAATATAATAGATATCTCAAGGAAGGTAGTTGAAAGGGGAAAAGAGACGAGCTTCGAACAACCAAATCAATGGATTGAGAAGAGCATAAAACTAGAAGAGAAAAATCGACTGTTAGAGCAAGAGAACGAGAAACTTCGTAAAGAGACAAGTCAATGGATGGATCATGCAACTTATTTGCAAAACAAACTCGAAAAGATTAAGAGTTTCTTAAAAAAATCAAGATAAGTTAGAAAAGAATCTTGAGACGTTAGATAAGGAGATGAGGCGAATGAATAAAGCAAATAGAAGTTTGAAAAATGAAAAGACAATATTACAAGCAATAGTAGGGTCGCAAGATGAATATATTAAAGATTTAGAAAGTGTGAAGGAATATTTTCTCGAGCTTGTAAATGATTTGAATACATCAATTGGAAAATGAGAAACACAAATAATGGATTTGGAAGCACACAATCATTCTTTGCGTCAAACTGTTGATAACCTACATCTGAAGATGGTCGAGTGCTCTGAAGAGTATGAGATACTAAAAAATTATGCCGATTTCTTACACTATCAACTTGCTACATTTCAAAATTCAaGTAAGAGGATAATGCAAGAATATGAGTCATTGAAGACGAATTACGTGCAAATGAAGGTTGATTATGATCTGCAAACAAGAGATTTCCAAGTGCTAATGGAACGTGTAGATCTGACGATTGAATTTCTCAGAATGGTGTCCGAAAGAGCAAATGATTTTGCAGAATGGGCAGCTGATTTGAAGGTTAATTTTTCCTCAATGCAACCTCATGCAGATGATCTAAATAGATTCTTGAAGATGATATGCAGAGAACTCGGGACATTTTGGTCGTTTTCATTAATTGTTCATTTTGCTATTGA

Coding sequence (CDS)

ATGGATTTGGAAGCACACAATCATTCTTTGCGTCAAACTGTTGATAACCTACATCTGAAGATGGTCGAGTGCTCTGAAGAGTATGAGATACTAAAAAATTATGCCGATTTCTTACACTATCAACTTGCTACATTTCAAAATTCAaGTAAGAGGATAATGCAAGAATATGAGTCATTGAAGACGAATTACGTGCAAATGAAGGTTGATTATGATCTGCAAACAAGAGATTTCCAAGTGCTAATGGAACGTGTAGATCTGACGATTGAATTTCTCAGAATGGTGTCCGAAAGAGCAAATGATTTTGCAGAATGGGCAGCTGATTTGAAGGTTAATTTTTCCTCAATGCAACCTCATGCAGATGATCTAAATAGATTCTTGAAGATGATATGCAGAGAACTCGGGACATTTTGGTCGTTTTCATTAATTGTTCATTTTGCTATT

Protein sequence

MDLEAHNHSLRQTVDNLHLKMVECSEEYEILKNYADFLHYQLATFQNSSKRIMQEYESLKTNYVQMKVDYDLQTRDFQVLMERVDLTIEFLRMVSERANDFAEWAADLKVNFSSMQPHADDLNRFLKMICRELGTFWSFSLIVHFAI
Homology
[Close]
BLAST of MELO3C035344.2 vs. NCBI nr
Match: XP_016900531.1 (PREDICTED: girdin-like [Cucumis melo])

HSP 1 Score: 132.9 bits (333), Expect = 9.0e-28
Identity = 64/79 (81.01%), Postives = 72/79 (91.14%), Query Frame = 0 

Query: 61  TNYVQMKVDYDLQTRDFQVLMERVDLTIEFLRMVSERANDFAEWAADLKVNFSSMQPHAD 120
           T+YVQMKVDYDLQTRDFQVL+ER+D TI+FLRMVS+RAN FAEWAADL+VNF S+Q HAD
Sbjct: 303 TDYVQMKVDYDLQTRDFQVLVERIDQTIKFLRMVSKRANVFAEWAADLRVNFFSLQSHAD 362

Query: 121 DLNRFLKMICRELGTFWSF 140
           DLNRFLKMIC+ELG F  F
Sbjct: 363 DLNRFLKMICKELGHFGRF 381

[Close]
BLAST of MELO3C035344.2 vs. TrEMBL
Match: tr|A0A1S4DX26|A0A1S4DX26_CUCME (girdin-like OS=Cucumis melo OX=3656 GN=LOC107990936 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.9e-28
Identity = 64/79 (81.01%), Postives = 72/79 (91.14%), Query Frame = 0 

Query: 61  TNYVQMKVDYDLQTRDFQVLMERVDLTIEFLRMVSERANDFAEWAADLKVNFSSMQPHAD 120
           T+YVQMKVDYDLQTRDFQVL+ER+D TI+FLRMVS+RAN FAEWAADL+VNF S+Q HAD
Sbjct: 303 TDYVQMKVDYDLQTRDFQVLVERIDQTIKFLRMVSKRANVFAEWAADLRVNFFSLQSHAD 362

Query: 121 DLNRFLKMICRELGTFWSF 140
           DLNRFLKMIC+ELG F  F
Sbjct: 363 DLNRFLKMICKELGHFGRF 381

The following BLAST results are available for this feature:
BLAST of MELO3C035344.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016900531.19.0e-2881.01PREDICTED: girdin-like [Cucumis melo][more]
BLAST of MELO3C035344.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C035344.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C035344.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DX26|A0A1S4DX26_CUCME5.9e-2881.01girdin-like OS=Cucumis melo OX=3656 GN=LOC107990936 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035344.2.1MELO3C035344.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C035344.2Silver-seed gourdcarmedB0452
MELO3C035344.2Silver-seed gourdcarmedB1052
MELO3C035344.2Cucumber (Chinese Long) v3cucmedB009
MELO3C035344.2Watermelon (97103) v2medwmbB142
MELO3C035344.2Wax gourdmedwgoB176
MELO3C035344.2Cucumber (Gy14) v2cgybmedB009
MELO3C035344.2Cucurbita maxima (Rimu)cmamedB215
MELO3C035344.2Cucurbita maxima (Rimu)cmamedB451
MELO3C035344.2Cucurbita moschata (Rifu)cmomedB203
MELO3C035344.2Cucurbita moschata (Rifu)cmomedB439
MELO3C035344.2Cucurbita pepo (Zucchini)cpemedB563
MELO3C035344.2Cucurbita pepo (Zucchini)cpemedB583
MELO3C035344.2Wild cucumber (PI 183967)cpimedB011
MELO3C035344.2Cucumber (Chinese Long) v2cumedB010
MELO3C035344.2Cucumber (Chinese Long) v2cumedB173
MELO3C035344.2Melon (DHL92) v3.6.1medmedB072
MELO3C035344.2Bottle gourd (USVL1VR-Ls)lsimedB255
MELO3C035344.2Watermelon (Charleston Gray)medwcgB141
MELO3C035344.2Watermelon (97103) v1medwmB143