MELO3C035264.2.1 (mRNA) Melon (DHL92) v3.6.1

Overview
NameMELO3C035264.2.1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Description50S ribosomal protein L2, chloroplastic
Locationchr12 : 902782 .. 903937 (-)
Sequence length1094
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATTCCTTAGACTGATAATGTTGAATCAGGATCAACTAGGACTTCTATCAATTCAATGGATGAACAAGTCAAGAGGATGGGTCGAACTCTTCTTTGGTGTCAAGATAATAGCTATGAATAGTCATTGACTTCCGAAAAAGGGTAGAAGAATGAGACCTATTATGGAACATACAATGCATTACAGACGTGAATATGGAATGTCATGACTTATAACGAAGTGGTCCGGAGGACTATTCGACCTATTCCTTTTAGAAAGAAAAGAACTGAAATCAAAATACTGAGTAGCATGACGATATATTTATACAAAACTTCTAGCTTGAGCTCGAGTTGCAATGGAGCCGTAGACAATCCACGAAAGAATTGGATATATGGACAACATCATTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACTGCAGTGCATAGAGGGGGAGGTTATAAGCGTCTATACTGTCCAATCTCTTTTGGAAGGAAAAAGACATATATGGTAGAATCATAACCATAGAATACGACCCTAATCGAAATGAATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGAGATATTTGACATCCCCAGAGGGGCTATAATTGGTGATACCATTCTTTCTGGTATAGAAGTTCCTATCAAAATGGGAAATACCCTACTGGTCTAAACTATTGATTTACATAATTGGAAGTAACCAATTAGGTTGACGATAAAACCTAGAAATCGATCATTAACCCAATTTGAGTACCTCTACAAGATAGACCTCAACAGAAAACTGAAGAGCAACGGTGGCAGCAAGTGTTTGAGTTTGATAGTTCCTCACATTAAATTATTGACTTTAGAGATATATTAATATGGAGAAGACTAAATTGTTTCAAGCACCAACAGAGCCAAAAGTGTCCCTTGTTTCAAAGAGAGGAGGACTTTCATTGACATTTTATGGTTAGAGGAAAATTGAAAGCTAAGTAGTGGTAATTCTAAGGATTCCTGAAGGAAAAAAGAGAGATGTCTCCTACATTGCTCGTAATATGTGGAAGTATCGACGTCATTTCATAGAGTCATTCGGTCTGAATGCTACATGAGAACATAAGCCAGATGAAGGAATGGGAAGACCTAGGATGTAGAAGATCATAACATGAGTGATTTGATAGATTTGGA

mRNA sequence

ATATTCCTTAGACTGATAATGTTGAATCAGGATCAACTAGGACTTAAGTCAAGAGGATGGGTCGAACTCTTCTTTGGTGTCAAGATAATAGCTATGAATAGTCATTGACTTCCGAAAAAGGGTAGAAGAATGAGACCTATTATGGAACATACAATGCATTACAGACGTGAATATGGAATGTCATGACTTATAACGAAGTGGTCTGAAATCAAAATACTGAGTAGCATGACGATATATTTATACAAAACTTCTAGCTTGAGCTCGAGTTGCAATGGAGCCGTAGACAATCCACGAAAGAATTGGATATATGGACAACATCATTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACTGCAGTGCATAGAGGGGGAGGTTATAAGCGTCTATACTGTCCAATCTCTTTTGGAAGGAAAAAGACATATATGGTAGAATCATAACCATAGAATACGACCCTAATCGAAATGAATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGAGATATTTGACATCCCCAGAGGGGCTATAATTGGTGATACCATTCTTTCTGGTATAGAAGTTCCTATCAAAATGGGAAATACCCTACTGGTCTAAACTATTGATTTACATAATTGGAAGTAACCAATTAGGTTGACGATAAAACCTAGAAATCGATCATTAACCCAATTTGAGTACCTCTACAAGATAGACCTCAACAGAAAACTGAAGAGCAACGGTGGCAGCAAGTGTTTGAGTTTGATAGTTCCTCACATTAAATTATTGACTTTAGAGATATATTAATATGGAGAAGACTAAATTGTTTCAAGCACCAACAGAGCCAAAAGTGTCCCTTGTTTCAAAGAGAGGAGGACTTTCATTGACATTTTATGGTTAGAGGAAAATTGAAAGCTAAGTAGTGGTAATTCTAAGGATTCCTGAAGGAAAAAAGAGAGATGTCTCCTACATTGCTCGTAATATGTGGAAGTATCGACGTCATTTCATAGAGTCATTCGGTCTGAATGCTACATGAGAACATAAGCCAGATGAAGGAATGGGAAGACCTAGGATGTAGAAGATCATAACATGAGTGATTTGATAGATTTGGA

Coding sequence (CDS)

ATGACGATATATTTATACAAAACTTCTAGCTTGAGCTCGAGTTGCAATGGAGCCGTAGACAATCCACGAAAGAATTGGATATATGGACAACATCATTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACTGCAGTGCATAGAGGGGGAGGTTATAAGCGTCTATACTGTCCAATCTCTTTTGGAAGGAAAAAGACATATATGGTAGAATCATAA

Protein sequence

MTIYLYKTSSLSSSCNGAVDNPRKNWIYGQHHCGKGRNARGIITAVHRGGGYKRLYCPISFGRKKTYMVES
Homology
[Close]
BLAST of MELO3C035264.2.1 vs. NCBI nr
Match: YP_009228806.1 (ribosomal protein L2 (chloroplast) [Metanarthecium luteoviride] >YP_009228826.1 ribosomal protein L2 (chloroplast) [Metanarthecium luteoviride] >ALS19946.1 ribosomal protein L2 (chloroplast) [Metanarthecium luteoviride] >ALS19947.1 ribosomal protein L2 (chloroplast) [Metanarthecium luteoviride])

HSP 1 Score: 95.5 bits (236), Expect = 7.7e-17
Identity = 50/70 (71.43%), Postives = 55/70 (78.57%), Query Frame = 0 

Query: 1  MTIYLYKTSSLSSSCNGAVD-----NPRKNWIYGQHHCGKGRNARGIITAVHRGGGYKRL 60
          M I+LYKTS+ SS+ NGAVD     NPRKN IYGQHHCGKGRNARGIITA HRGGG+KRL
Sbjct: 1  MAIHLYKTST-SSTRNGAVDSQVKSNPRKNLIYGQHHCGKGRNARGIITAGHRGGGHKRL 60

Query: 61 YCPISFGRKK 66
          Y  I F R +
Sbjct: 61 YRKIDFRRNE 69

[Close]
BLAST of MELO3C035264.2.1 vs. NCBI nr
Match: YP_319805.1 (ribosomal protein L2 [Acorus calamus] >YP_319826.1 ribosomal protein L2 [Acorus calamus] >YP_001586223.1 ribosomal protein L2 [Acorus americanus] >YP_001586244.1 ribosomal protein L2 [Acorus americanus] >Q3V4X1.1 RecName: Full=50S ribosomal protein L2, chloroplastic >A9LYE2.1 RecName: Full=50S ribosomal protein L2, chloroplastic >CAI53836.1 ribosomal protein L2 (plastid) [Acorus calamus] >CAI53857.1 ribosomal protein L2 (plastid) [Acorus calamus] >ABX38785.1 ribosomal protein L2 (chloroplast) [Acorus americanus] >ABX38806.1 ribosomal protein L2 (chloroplast) [Acorus americanus])

HSP 1 Score: 95.1 bits (235), Expect = 1.0e-16
Identity = 50/70 (71.43%), Postives = 54/70 (77.14%), Query Frame = 0 

Query: 1  MTIYLYKTSSLSSSCNGAVD-----NPRKNWIYGQHHCGKGRNARGIITAVHRGGGYKRL 60
          M I+LYKTS+ SS+ NGAVD     NPR N IYGQHHCGKGRNARGIITA HRGGG+KRL
Sbjct: 1  MAIHLYKTST-SSTRNGAVDSQVKSNPRNNLIYGQHHCGKGRNARGIITAGHRGGGHKRL 60

Query: 61 YCPISFGRKK 66
          Y  I F R K
Sbjct: 61 YRKIDFRRNK 69

[Close]
BLAST of MELO3C035264.2.1 vs. NCBI nr
Match: YP_009454673.1 (ribosomal protein L2 (chloroplast) [Alnus cordata] >YP_009454758.1 ribosomal protein L2 (chloroplast) [Alnus incana] >YP_009454843.1 ribosomal protein L2 (chloroplast) [Alnus japonica] >YP_009454928.1 ribosomal protein L2 (chloroplast) [Alnus maximowiczii] >YP_009455013.1 ribosomal protein L2 (chloroplast) [Alnus nitida] >YP_009455098.1 ribosomal protein L2 (chloroplast) [Alnus orientalis] >YP_009455183.1 ribosomal protein L2 (chloroplast) [Alnus rubra] >YP_009455268.1 ribosomal protein L2 (chloroplast) [Alnus subcordata] >AUG61007.1 ribosomal protein L2 (chloroplast) [Alnus alnobetula subsp. crispa] >AUG61094.1 ribosomal protein L2 (chloroplast) [Alnus alnobetula subsp. suaveolens] >AUG61179.1 ribosomal protein L2 (chloroplast) [Alnus cordata] >AUG61262.1 ribosomal protein L2 (chloroplast) [Alnus alnobetula subsp. alnobetula] >AUG61347.1 ribosomal protein L2 (chloroplast) [Alnus glutinosa subsp. betuloides] >AUG61434.1 ribosomal protein L2 (chloroplast) [Alnus cordata] >AUG61517.1 ribosomal protein L2 (chloroplast) [Alnus glutinosa subsp. barbata] >AUG61602.1 ribosomal protein L2 (chloroplast) [Alnus glutinosa subsp. glutinosa] >AUG61656.1 ribosomal protein L2 (chloroplast) [Alnus glutinosa subsp. glutinosa] >AUG61774.1 ribosomal protein L2 (chloroplast) [Alnus glutinosa subsp. glutinosa] >AUG61857.1 ribosomal protein L2 (chloroplast) [Alnus incana] >AUG61996.1 ribosomal protein L2 (chloroplast) [Alnus japonica] >AUG61944.1 ribosomal protein L2 (chloroplast) [Alnus incana] >AUG62114.1 ribosomal protein L2 (chloroplast) [Alnus jorullensis subsp. jorullensis] >AUG62199.1 ribosomal protein L2 (chloroplast) [Alnus maritima subsp. maritima] >AUG62284.1 ribosomal protein L2 (chloroplast) [Alnus maritima subsp. maritima] >AUG62367.1 ribosomal protein L2 (chloroplast) [Alnus maritima subsp. oklahomensis] >AUG62452.1 ribosomal protein L2 (chloroplast) [Alnus maximowiczii] >AUG62537.1 ribosomal protein L2 (chloroplast) [Alnus nitida] >AUG62591.1 ribosomal protein L2 (chloroplast) [Alnus orientalis] >AUG62707.1 ribosomal protein L2 (chloroplast) [Alnus rubra] >AUG62794.1 ribosomal protein L2 (chloroplast) [Alnus subcordata])

HSP 1 Score: 94.4 bits (233), Expect = 1.7e-16
Identity = 49/70 (70.00%), Postives = 55/70 (78.57%), Query Frame = 0 

Query: 1  MTIYLYKTSSLSSSCNGAVD-----NPRKNWIYGQHHCGKGRNARGIITAVHRGGGYKRL 60
          M I+LYKTS+ SS+ NGAVD     NPRKN IYGQHHCGKGRN+RGIITA HRGGG+KRL
Sbjct: 1  MAIHLYKTST-SSTRNGAVDSQVKYNPRKNLIYGQHHCGKGRNSRGIITAGHRGGGHKRL 60

Query: 61 YCPISFGRKK 66
          Y  I F R +
Sbjct: 61 YRKIDFRRNE 69

[Close]
BLAST of MELO3C035264.2.1 vs. NCBI nr
Match: AVN97965.1 (ribosomal protein L2 (chloroplast) [Alnus rubra] >AVN97995.1 ribosomal protein L2 (chloroplast) [Alnus rubra])

HSP 1 Score: 94.4 bits (233), Expect = 1.7e-16
Identity = 49/70 (70.00%), Postives = 55/70 (78.57%), Query Frame = 0 

Query: 1  MTIYLYKTSSLSSSCNGAVD-----NPRKNWIYGQHHCGKGRNARGIITAVHRGGGYKRL 60
          M I+LYKTS+ SS+ NGAVD     NPRKN IYGQHHCGKGRN+RGIITA HRGGG+KRL
Sbjct: 1  MAIHLYKTST-SSTRNGAVDSQVKYNPRKNLIYGQHHCGKGRNSRGIITAGHRGGGHKRL 60

Query: 61 YCPISFGRKK 66
          Y  I F R +
Sbjct: 61 YRKIDFRRNE 69

[Close]
BLAST of MELO3C035264.2.1 vs. NCBI nr
Match: AEK71544.1 (ribosomal protein L2 (plastid) [Picramnia pentandra])

HSP 1 Score: 93.6 bits (231), Expect = 2.9e-16
Identity = 49/70 (70.00%), Postives = 53/70 (75.71%), Query Frame = 0 

Query: 1  MTIYLYKTSSLSSSCNGAVD-----NPRKNWIYGQHHCGKGRNARGIITAVHRGGGYKRL 60
          M I+LYKTS+  S+ N AVD     NPRKNWIYGQH CGKGRNARGIITA HRGGG+KRL
Sbjct: 1  MAIHLYKTST-PSTRNVAVDSQVKSNPRKNWIYGQHRCGKGRNARGIITARHRGGGHKRL 60

Query: 61 YCPISFGRKK 66
          Y  I F R K
Sbjct: 61 YRKIDFRRNK 69

[Close]
BLAST of MELO3C035264.2.1 vs. TAIR10
Match: ATCG00830.1 (ribosomal protein L2)

HSP 1 Score: 87.8 bits (216), Expect = 2.9e-18
Identity = 47/68 (69.12%), Postives = 51/68 (75.00%), Query Frame = 0 

Query: 1  MTIYLYKTSSLSSSCNGAVD-----NPRKNWIYGQHHCGKGRNARGIITAVHRGGGYKRL 60
          M I+LYKTS+  S+ NGAVD     NPR N I GQHHCGKGRNARGIITA HRGGG+KRL
Sbjct: 1  MAIHLYKTST-PSTRNGAVDSQVKSNPRNNLICGQHHCGKGRNARGIITARHRGGGHKRL 60

Query: 61 YCPISFGR 64
          Y  I F R
Sbjct: 61 YRKIDFRR 67

[Close]
BLAST of MELO3C035264.2.1 vs. TAIR10
Match: ATCG01310.1 (ribosomal protein L2)

HSP 1 Score: 87.8 bits (216), Expect = 2.9e-18
Identity = 47/68 (69.12%), Postives = 51/68 (75.00%), Query Frame = 0 

Query: 1  MTIYLYKTSSLSSSCNGAVD-----NPRKNWIYGQHHCGKGRNARGIITAVHRGGGYKRL 60
          M I+LYKTS+  S+ NGAVD     NPR N I GQHHCGKGRNARGIITA HRGGG+KRL
Sbjct: 1  MAIHLYKTST-PSTRNGAVDSQVKSNPRNNLICGQHHCGKGRNARGIITARHRGGGHKRL 60

Query: 61 YCPISFGR 64
          Y  I F R
Sbjct: 61 YRKIDFRR 67

[Close]
BLAST of MELO3C035264.2.1 vs. Swiss-Prot
Match: sp|A9LYE2|RK2_ACOAM (50S ribosomal protein L2, chloroplastic OS=Acorus americanus OX=263995 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.3e-19
Identity = 50/70 (71.43%), Postives = 54/70 (77.14%), Query Frame = 0 

Query: 1  MTIYLYKTSSLSSSCNGAVD-----NPRKNWIYGQHHCGKGRNARGIITAVHRGGGYKRL 60
          M I+LYKTS+ SS+ NGAVD     NPR N IYGQHHCGKGRNARGIITA HRGGG+KRL
Sbjct: 1  MAIHLYKTST-SSTRNGAVDSQVKSNPRNNLIYGQHHCGKGRNARGIITAGHRGGGHKRL 60

Query: 61 YCPISFGRKK 66
          Y  I F R K
Sbjct: 61 YRKIDFRRNK 69

[Close]
BLAST of MELO3C035264.2.1 vs. Swiss-Prot
Match: sp|Q3V4X1|RK2_ACOCL (50S ribosomal protein L2, chloroplastic OS=Acorus calamus OX=4465 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.3e-19
Identity = 50/70 (71.43%), Postives = 54/70 (77.14%), Query Frame = 0 

Query: 1  MTIYLYKTSSLSSSCNGAVD-----NPRKNWIYGQHHCGKGRNARGIITAVHRGGGYKRL 60
          M I+LYKTS+ SS+ NGAVD     NPR N IYGQHHCGKGRNARGIITA HRGGG+KRL
Sbjct: 1  MAIHLYKTST-SSTRNGAVDSQVKSNPRNNLIYGQHHCGKGRNARGIITAGHRGGGHKRL 60

Query: 61 YCPISFGRKK 66
          Y  I F R K
Sbjct: 61 YRKIDFRRNK 69

[Close]
BLAST of MELO3C035264.2.1 vs. Swiss-Prot
Match: sp|A4QKN3|RK2_CAPBU (50S ribosomal protein L2, chloroplastic OS=Capsella bursa-pastoris OX=3719 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.2e-18
Identity = 49/68 (72.06%), Postives = 52/68 (76.47%), Query Frame = 0 

Query: 1  MTIYLYKTSSLSSSCNGAVD-----NPRKNWIYGQHHCGKGRNARGIITAVHRGGGYKRL 60
          M IYLYKTS+  S+ NGAVD     NPR N IYGQHHCGKGRNARGIITA HRGGG+KRL
Sbjct: 1  MAIYLYKTST-PSTRNGAVDSQVKSNPRNNLIYGQHHCGKGRNARGIITARHRGGGHKRL 60

Query: 61 YCPISFGR 64
          Y  I F R
Sbjct: 61 YRKIDFRR 67

[Close]
BLAST of MELO3C035264.2.1 vs. Swiss-Prot
Match: sp|A6MMG4|RK2A_CHLSC (50S ribosomal protein L2-A, chloroplastic OS=Chloranthus spicatus OX=13006 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.6e-18
Identity = 48/70 (68.57%), Postives = 53/70 (75.71%), Query Frame = 0 

Query: 1  MTIYLYKTSSLSSSCNGAVD-----NPRKNWIYGQHHCGKGRNARGIITAVHRGGGYKRL 60
          M I+LYKTS+  S+ NGAVD     NPR N IYGQHHCGKGRNARGIITA HRGGG+KRL
Sbjct: 1  MAIHLYKTST-PSTRNGAVDSQVKSNPRNNLIYGQHHCGKGRNARGIITAGHRGGGHKRL 60

Query: 61 YCPISFGRKK 66
          Y  I F R +
Sbjct: 61 YRKIDFRRNE 69

[Close]
BLAST of MELO3C035264.2.1 vs. Swiss-Prot
Match: sp|A6MMI6|RK2B_CHLSC (50S ribosomal protein L2-B, chloroplastic OS=Chloranthus spicatus OX=13006 GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.6e-18
Identity = 48/70 (68.57%), Postives = 53/70 (75.71%), Query Frame = 0 

Query: 1  MTIYLYKTSSLSSSCNGAVD-----NPRKNWIYGQHHCGKGRNARGIITAVHRGGGYKRL 60
          M I+LYKTS+  S+ NGAVD     NPR N IYGQHHCGKGRNARGIITA HRGGG+KRL
Sbjct: 1  MAIHLYKTST-PSTRNGAVDSQVKSNPRNNLIYGQHHCGKGRNARGIITAGHRGGGHKRL 60

Query: 61 YCPISFGRKK 66
          Y  I F R +
Sbjct: 61 YRKIDFRRNE 69

[Close]
BLAST of MELO3C035264.2.1 vs. TrEMBL
Match: tr|A0A0U2W094|A0A0U2W094_9LILI (50S ribosomal protein L2, chloroplastic OS=Metanarthecium luteoviride OX=1112727 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.1e-17
Identity = 50/70 (71.43%), Postives = 55/70 (78.57%), Query Frame = 0 

Query: 1  MTIYLYKTSSLSSSCNGAVD-----NPRKNWIYGQHHCGKGRNARGIITAVHRGGGYKRL 60
          M I+LYKTS+ SS+ NGAVD     NPRKN IYGQHHCGKGRNARGIITA HRGGG+KRL
Sbjct: 1  MAIHLYKTST-SSTRNGAVDSQVKSNPRKNLIYGQHHCGKGRNARGIITAGHRGGGHKRL 60

Query: 61 YCPISFGRKK 66
          Y  I F R +
Sbjct: 61 YRKIDFRRNE 69

[Close]
BLAST of MELO3C035264.2.1 vs. TrEMBL
Match: tr|A0A2H5A5A1|A0A2H5A5A1_9ROSI (50S ribosomal protein L2, chloroplastic OS=Alnus cordata OX=109058 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-16
Identity = 49/70 (70.00%), Postives = 55/70 (78.57%), Query Frame = 0 

Query: 1  MTIYLYKTSSLSSSCNGAVD-----NPRKNWIYGQHHCGKGRNARGIITAVHRGGGYKRL 60
          M I+LYKTS+ SS+ NGAVD     NPRKN IYGQHHCGKGRN+RGIITA HRGGG+KRL
Sbjct: 1  MAIHLYKTST-SSTRNGAVDSQVKYNPRKNLIYGQHHCGKGRNSRGIITAGHRGGGHKRL 60

Query: 61 YCPISFGRKK 66
          Y  I F R +
Sbjct: 61 YRKIDFRRNE 69

[Close]
BLAST of MELO3C035264.2.1 vs. TrEMBL
Match: tr|A0A2H5A866|A0A2H5A866_ALNMA (50S ribosomal protein L2, chloroplastic OS=Alnus maritima subsp. maritima OX=2004887 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-16
Identity = 49/70 (70.00%), Postives = 55/70 (78.57%), Query Frame = 0 

Query: 1  MTIYLYKTSSLSSSCNGAVD-----NPRKNWIYGQHHCGKGRNARGIITAVHRGGGYKRL 60
          M I+LYKTS+ SS+ NGAVD     NPRKN IYGQHHCGKGRN+RGIITA HRGGG+KRL
Sbjct: 1  MAIHLYKTST-SSTRNGAVDSQVKYNPRKNLIYGQHHCGKGRNSRGIITAGHRGGGHKRL 60

Query: 61 YCPISFGRKK 66
          Y  I F R +
Sbjct: 61 YRKIDFRRNE 69

[Close]
BLAST of MELO3C035264.2.1 vs. TrEMBL
Match: tr|A0A2H5A7F2|A0A2H5A7F2_ALNIN (50S ribosomal protein L2, chloroplastic OS=Alnus incana OX=3516 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-16
Identity = 49/70 (70.00%), Postives = 55/70 (78.57%), Query Frame = 0 

Query: 1  MTIYLYKTSSLSSSCNGAVD-----NPRKNWIYGQHHCGKGRNARGIITAVHRGGGYKRL 60
          M I+LYKTS+ SS+ NGAVD     NPRKN IYGQHHCGKGRN+RGIITA HRGGG+KRL
Sbjct: 1  MAIHLYKTST-SSTRNGAVDSQVKYNPRKNLIYGQHHCGKGRNSRGIITAGHRGGGHKRL 60

Query: 61 YCPISFGRKK 66
          Y  I F R +
Sbjct: 61 YRKIDFRRNE 69

[Close]
BLAST of MELO3C035264.2.1 vs. TrEMBL
Match: tr|A0A2H5A6I6|A0A2H5A6I6_ALNGL (50S ribosomal protein L2, chloroplastic OS=Alnus glutinosa subsp. glutinosa OX=2004886 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-16
Identity = 49/70 (70.00%), Postives = 55/70 (78.57%), Query Frame = 0 

Query: 1  MTIYLYKTSSLSSSCNGAVD-----NPRKNWIYGQHHCGKGRNARGIITAVHRGGGYKRL 60
          M I+LYKTS+ SS+ NGAVD     NPRKN IYGQHHCGKGRN+RGIITA HRGGG+KRL
Sbjct: 1  MAIHLYKTST-SSTRNGAVDSQVKYNPRKNLIYGQHHCGKGRNSRGIITAGHRGGGHKRL 60

Query: 61 YCPISFGRKK 66
          Y  I F R +
Sbjct: 61 YRKIDFRRNE 69

The following BLAST results are available for this feature:
BLAST of MELO3C035264.2.1 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009228806.17.7e-1771.43ribosomal protein L2 (chloroplast) [Metanarthecium luteoviride] >YP_009228826.1 ... [more]
YP_319805.11.0e-1671.43ribosomal protein L2 [Acorus calamus] >YP_319826.1 ribosomal protein L2 [Acorus ... [more]
YP_009454673.11.7e-1670.00ribosomal protein L2 (chloroplast) [Alnus cordata] >YP_009454758.1 ribosomal pro... [more]
AVN97965.11.7e-1670.00ribosomal protein L2 (chloroplast) [Alnus rubra] >AVN97995.1 ribosomal protein L... [more]
AEK71544.12.9e-1670.00ribosomal protein L2 (plastid) [Picramnia pentandra][more]
BLAST of MELO3C035264.2.1 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00830.12.9e-1869.12ribosomal protein L2[more]
ATCG01310.12.9e-1869.12ribosomal protein L2[more]
BLAST of MELO3C035264.2.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|A9LYE2|RK2_ACOAM3.3e-1971.4350S ribosomal protein L2, chloroplastic OS=Acorus americanus OX=263995 GN=rpl2-A... [more]
sp|Q3V4X1|RK2_ACOCL3.3e-1971.4350S ribosomal protein L2, chloroplastic OS=Acorus calamus OX=4465 GN=rpl2-A PE=3... [more]
sp|A4QKN3|RK2_CAPBU1.2e-1872.0650S ribosomal protein L2, chloroplastic OS=Capsella bursa-pastoris OX=3719 GN=rp... [more]
sp|A6MMG4|RK2A_CHLSC3.6e-1868.5750S ribosomal protein L2-A, chloroplastic OS=Chloranthus spicatus OX=13006 GN=rp... [more]
sp|A6MMI6|RK2B_CHLSC3.6e-1868.5750S ribosomal protein L2-B, chloroplastic OS=Chloranthus spicatus OX=13006 GN=rp... [more]
BLAST of MELO3C035264.2.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0U2W094|A0A0U2W094_9LILI5.1e-1771.4350S ribosomal protein L2, chloroplastic OS=Metanarthecium luteoviride OX=1112727... [more]
tr|A0A2H5A5A1|A0A2H5A5A1_9ROSI1.1e-1670.0050S ribosomal protein L2, chloroplastic OS=Alnus cordata OX=109058 GN=rpl2 PE=3 ... [more]
tr|A0A2H5A866|A0A2H5A866_ALNMA1.1e-1670.0050S ribosomal protein L2, chloroplastic OS=Alnus maritima subsp. maritima OX=200... [more]
tr|A0A2H5A7F2|A0A2H5A7F2_ALNIN1.1e-1670.0050S ribosomal protein L2, chloroplastic OS=Alnus incana OX=3516 GN=rpl2 PE=3 SV=... [more]
tr|A0A2H5A6I6|A0A2H5A6I6_ALNGL1.1e-1670.0050S ribosomal protein L2, chloroplastic OS=Alnus glutinosa subsp. glutinosa OX=2... [more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0005622 intracellular
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0009536 plastid
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0016740 transferase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C035264.2MELO3C035264.2gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C035264.2.1MELO3C035264.2.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C035264.2.1.five_prime_UTR.3MELO3C035264.2.1.five_prime_UTR.3five_prime_UTR
MELO3C035264.2.1.five_prime_UTR.2MELO3C035264.2.1.five_prime_UTR.2five_prime_UTR
MELO3C035264.2.1.five_prime_UTR.1MELO3C035264.2.1.five_prime_UTR.1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C035264.2.1.exon.3MELO3C035264.2.1.exon.3exon
MELO3C035264.2.1.exon.2MELO3C035264.2.1.exon.2exon
MELO3C035264.2.1.exon.1MELO3C035264.2.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C035264.2.1.CDS.1MELO3C035264.2.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C035264.2.1.three_prime_UTR.1MELO3C035264.2.1.three_prime_UTR.1three_prime_UTR


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:2.40.50.140coord: 21..71
e-value: 1.6E-10
score: 42.7
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILYSSF50249Nucleic acid-binding proteinscoord: 20..68