MELO3C035142.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C035142.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	DDE_4 domain-containing protein
Location	chr11 : 25134184 .. 25135379 (+)
Sequence length	468

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTTGCACAAAGTGCAATCTTCTAAACAACCATGTAGAACCTCTAAATTGAGAGGACATGATTATGTGATCGAGTTGTTAAATGGAAACGATAGTAAATGTTTTGACTGTTTAGGATAAAAAAAGTTACATTCATAAGGTTTTGTGAAGATTTAAAATCTAAGACAAATCTCCAAGCATCTAGGTATCTCACTGTTCAAGAAAAAGTTGCATTATTCTTATTAATCATATCACATAATAAAAGCAATTGTATAGCAACAGAAAGATTTCAACATTCAGGTCATACTATTTCTCTAGCTTTTAACCTTGTTTTGAGGAAGGTTTGCAAACTTGGACTAGAAATTATTAGCCCACCCAATATGGACACTTTACCAATGGAGATCGTATTAAATTCAAAATATTACTCATTCTTTAAGGTAATGCGTTAATGTTTTGAAATATTACCCTCTCTTTCACGGAGTTGATACTAATTCAAAATATATTTGTGTTTATGATTATCCTTTAGAATTATATTGGTGTTATTGACGACACTCATGTTGATGCAAGTGTTCTTCAAAATGAACAAATATCGTTTCGTGGAAGAAAAACTAACACAACATGGAATATAATGTGTGTCTGTTCATTTGATATGTTATTCATGTATGTCAGGTCTAGTTAGGAAGGATCAACTAATGATTTTTGCATACTTCTTGAATGTATCAAGAATCCCAAGAATAAATGTCCTATGCCTAAGAAAGGTAAATAATTATGTGTTTTTAGAACTTTAAATAAAATGGATGACTTTATGATAATTTTTTTTTTTATTTGCTTTATTATATGCAGATCAATACTATCTTGTCAATTCAGGATCTTCAAATATACAAGGATTTTTAACACTATTTCGTGGTCAAAGATATCATTTACGAGATTTAGAGAAAGGAGACATCGCCCTCGAGGTAAAGAAGAAGTGTTTAACTATTGATATTCTTCACTGTGAGATGTCATCGAATGTTATTTTGGTGTGTTGAATGCTCAATTTCCTATTAAAATGCCTCCATACCCGATCAAGACACAAAAATATATACCGATAGTATGTTGAACAATTTACAATTATATTAGATTGAATGATCGTCAACATCATCGATCTATTCAATAACTTTAGCAATCAATCAATGATCATCAAAGATACACATAATTTGTCTGCCAATTTGTAG

mRNA sequence

ATGAGCTTGCACAAAGTGCAATCTTCTAAACAACCATGTAGAACCTCTAAATTGAGAGGACATGATTATGTGATCGAGTTGTTAAATGGAAACGATAATCAATACTATCTTGTCAATTCAGGATCTTCAAATATACAAGGATTTTTAACACTATTTCGTGGTCAAAGATATCATTTACGAGATTTAGAGAAAGGAGACATCGCCCTCGAGGTAAAGAAGAAGTGTTTAACTATTGATATTCTTCACTGTGAGATGTCATCGAATGTTATTTTGGTGTGTTGAATGCTCAATTTCCTATTAAAATGCCTCCATACCCGATCAAGACACAAAAATATATACCGATAGTATGTTGAACAATTTACAATTATATTAGATTGAATGATCGTCAACATCATCGATCTATTCAATAACTTTAGCAATCAATCAATGATCATCAAAGATACACATAATTTGTCTGCCAATTTGTAG

Coding sequence (CDS)

ATGAGCTTGCACAAAGTGCAATCTTCTAAACAACCATGTAGAACCTCTAAATTGAGAGGACATGATTATGTGATCGAGTTGTTAAATGGAAACGATAATCAATACTATCTTGTCAATTCAGGATCTTCAAATATACAAGGATTTTTAACACTATTTCGTGGTCAAAGATATCATTTACGAGATTTAGAGAAAGGAGACATCGCCCTCGAGGTAAAGAAGAAGTGTTTAACTATTGATATTCTTCACTGTGAGATGTCATCGAATGTTATTTTGGTGTGTTGA

Protein sequence

MSLHKVQSSKQPCRTSKLRGHDYVIELLNGNDNQYYLVNSGSSNIQGFLTLFRGQRYHLRDLEKGDIALEVKKKCLTIDILHCEMSSNVILVC

Homology

[Close]

BLAST of MELO3C035142.2.1 vs. NCBI nr
Match: OMP02308.1 (hypothetical protein CCACVL1_02836 [Corchorus capsularis])

HSP 1 Score: 69.7 bits (169), Expect = 5.9e-09
Identity = 29/52 (55.77%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 10  KQPCRTSKLRGHDYVIELLNGNDNQYYLVNSGSSNIQGFLTLFRGQRYHLRD 62
           KQPCR S+L G+ ++ E+L+G+D +YYLV+SG +N+ GFL+ + G RYHLRD
Sbjct: 170 KQPCRVSQLSGYAFLQEILHGHDRKYYLVDSGYTNMHGFLSSYCGDRYHLRD 221

[Close]

BLAST of MELO3C035142.2.1 vs. NCBI nr
Match: XP_022843629.1 (uncharacterized protein LOC111367135 isoform X1 [Olea europaea var. sylvestris] >XP_022843630.1 uncharacterized protein LOC111367135 isoform X1 [Olea europaea var. sylvestris] >XP_022843631.1 uncharacterized protein LOC111367135 isoform X1 [Olea europaea var. sylvestris])

HSP 1 Score: 53.1 bits (126), Expect = 5.7e-04
Identity = 24/58 (41.38%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 32  DNQYYLVNSGSSNIQGFLTLFRGQRYHLRDLEKGDIALEVKKKCLTIDILHCEMSSNV 90
           D++YYLV++G  N++ +L L++G+RYHL D  +  + LE  +K L + I H E+  NV
Sbjct: 189 DDKYYLVDAGYPNMKCYLALYKGERYHLPDFRRVVVNLEALEKFLIMHITHYEVLLNV 246

[Close]

BLAST of MELO3C035142.2.1 vs. NCBI nr
Match: XP_022843633.1 (uncharacterized protein LOC111367135 isoform X3 [Olea europaea var. sylvestris])

HSP 1 Score: 53.1 bits (126), Expect = 5.7e-04
Identity = 24/58 (41.38%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 32  DNQYYLVNSGSSNIQGFLTLFRGQRYHLRDLEKGDIALEVKKKCLTIDILHCEMSSNV 90
           D++YYLV++G  N++ +L L++G+RYHL D  +  + LE  +K L + I H E+  NV
Sbjct: 145 DDKYYLVDAGYPNMKCYLALYKGERYHLPDFRRVVVNLEALEKFLIMHITHYEVLLNV 202

[Close]

BLAST of MELO3C035142.2.1 vs. TrEMBL
Match: tr|A0A1R3K5Q1|A0A1R3K5Q1_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_02836 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.9e-09
Identity = 29/52 (55.77%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 10  KQPCRTSKLRGHDYVIELLNGNDNQYYLVNSGSSNIQGFLTLFRGQRYHLRD 62
           KQPCR S+L G+ ++ E+L+G+D +YYLV+SG +N+ GFL+ + G RYHLRD
Sbjct: 170 KQPCRVSQLSGYAFLQEILHGHDRKYYLVDSGYTNMHGFLSSYCGDRYHLRD 221

The following BLAST results are available for this feature:

BLAST of MELO3C035142.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
OMP02308.1	5.9e-09	55.77	hypothetical protein CCACVL1_02836 [Corchorus capsularis]	[more]
XP_022843629.1	5.7e-04	41.38	uncharacterized protein LOC111367135 isoform X1 [Olea europaea var. sylvestris] ...	[more]
XP_022843633.1	5.7e-04	41.38	uncharacterized protein LOC111367135 isoform X3 [Olea europaea var. sylvestris]	[more]

BLAST of MELO3C035142.2.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C035142.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C035142.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1R3K5Q1\|A0A1R3K5Q1_COCAP	3.9e-09	55.77	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_02836 PE=4 ...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C035142.2	MELO3C035142.2	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C035142.2.1.CDS.1	MELO3C035142.2.1.CDS.1	CDS
MELO3C035142.2.1.CDS.2	MELO3C035142.2.1.CDS.2	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C035142.2.1.exon.1	MELO3C035142.2.1.exon.1	exon
MELO3C035142.2.1.exon.2	MELO3C035142.2.1.exon.2	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C035142.2.1.three_prime_UTR.1	MELO3C035142.2.1.three_prime_UTR.1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C035142.2.1	MELO3C035142.2.1-protein	polypeptide