MELO3C035024.2.1 (mRNA) Melon (DHL92) v3.6.1

Overview
NameMELO3C035024.2.1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionCalcineurin-like metallo-phosphoesterase superfamily protein
Locationchr11 : 16867196 .. 16870695 (+)
Sequence length552
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGCTTGAGATTGAAGATCAGTTAGTGTTATATTGCCAATTTAAATAAACTTGTACAAAAACTATAAGCAAATTTACCTCAACTATGGTATATATATTTTCCTTCAATTCTCTGCAAGCACATCTGTCCATGTCGCATAGATATGGGGATGTGGTAGTGTATACACCACCCGATAAAAGAGTTTAGCTTTGCCCCATTTTCTCCAATCACTATTAGAAAAATGGATTTTAATGACACTACTAATCAAAACATTGTGTCATTCAAAATAAAAAAGGTGGGGTGGAGTAAAATGTGTCGTTGAAAATAAAAATTGCAGAATTTTTCTTCACACAATTTTCTTGAAATAATTTTCACGTCGTTAATTAATGACATAATTTTTGTGTCATTAAAAATTTTCACACATAAATAAAAACCTAATTCCAAAATTAAAAAGAAAAACAAAAAAATCCCTTTCTTCGTACACACGCTCATCCCTCGAAAAACCATTGGTTTAAGCTCGCATCAGTCATCTCCAAGGCTCTCGAAAAAACCCTCGCATCATCTCGCACTGCCGTCATCTTCGTTCGCCATCTTCCGACGTTCAAATTGTGATAGTTCCGTTCGCGTCAGTCATCTCCACCATCATCTCCATTTGCGTCAGTCATCTCGCACCACCATCCGAATTGTGATAGCTCCTCTATATGGTTCTTCAACTATGCTTCTCTCTTTTTTTTTTTTCAGATTTGTCTCCTCTCTTTCTGTTTACCTATTTTCTTTGTTCTGGGGTTTACTGATTTCTGTTGAAATCAGATTCTCGTTTTACTGTTCAGATGGATCGGTACGACATAATGGATTGGCCAAGAGCTGAGACTTTTTGTGTGAGTGGTGGAAAAAATCAGACTTTTTATCTTCTTATTCTTTCTTGTTCTTTTCGTCTTAGATTTGATCTTGGTTTTCGACCAACCTATTATATTTTTAACTTCTTCCACTACTATACTCTTGTTGCTATTTACATCGTGCTGTGGATTGTGTTTTCAATTTCTTATGTTGAATGTTAAGTGGGTTTTCATGTGGGTGTCTTACCCATTTGTATTTTACTCTGAACCTTGCTAAATTGGTTTGTTAATGTGAGATTGACATTCGTGTTTTGATGTAATTTTGAGGTGAATTTCATTTCCTACTATTGATTTGAAATATGATCTATATTGTTGATAGCTAATTGCTTCTTTGCGTGAGGTGCTTTGATGAGAGCTATGAATACCGTTTTTCTTTTTTCAGATTTTTTTTTTCCAATTGGATGGTTTCCTTTATATTTGTTGGCAGCATTGGCTTGGTAGATTATTGAATTACACTATGGTTCTTTATACATCTGGTACTTCTTTTTAAGGATTTTCTTTTTCCTATATTATACAGTATCATAGTGAGCTTCATCTCTGTAAAACATACAGAATAACTACCTAAGCTAAGATAAACATTCTTTAAATTTTTTTCATGATCTCAATTTTTTCTTTATCTCAAAGTTCATGGTCTCAAACATTATGAGACTTACAATACAATTAACTTTGAAGTTCCTTTCTTTTCCCTTAAGGTTCTGTGTACAAAAGATGGTTCCTAACAATTATTGCTTTCTTTCTTAATTAAAAAAAAAACTCGTTAAGGCTTATGTCCATATATCTACATTTTGATAGTCTTGAAGTGCTAGATATTTTGTTGTTCAAAATTGCTTTATGATTCATTTATAAATTTAGGTAGAGAAGTTCATCACTTGTCAAAATATTTCATTTCATTATGAAAATATAGGAAGGGTACAAAGAAGCCTAAGGAACAATACTTTACTCTTGCAAGATAAAAGAATAAAAGAATAATTCGCATGTATAATCTCAGGATTTTTGTTTTTCTCATAACTTATTTGAATAATGTGGTTCTTTTTATAGGACAAGGTATTATGGGAGGAGACATTTTAATGTAGTAATGCAAAAGTTCAATGGGGCAAGTTAATTTTATGGTGCTATGTTATGTGACACGACATGAATTTCAAGTATTTCTATCTGCTAACTTGAATCGAAATCAACAATAAGTGCAGAAGCCAAAGAACAGGACTCAATTTGTTGATAACAAACTATAGTTATTGTTGTTTTTTATCTTCAAAGTTGATATTTATTAGTTTTATTTTCTCTTTTTTGTGTTTTTCTAGGTATCGATACTAGTCTTTATTGAGTTCTTTTGTTTTTTGGGACAGGTAATAGTTTTTCAATTTATAAATTTGGTATAAAGTTTACTAAGTTTTCTTAATTTTAAGTTTATTTTCGATTTGGATCCTATCTATGTGGTTATGTTGTGAATTATATTGATTCTGTGTTGTAAAGTTTTATTTAGAGCTTAGTTGTATTAATGCAAGTGACATTTGACAAATTGTGTTTTTTCTTTTGTTTTTATTTATGAGGGCTTGAAAAACTTCGAGGTATGTTCTCTTATATCACATTTCAATCCACGTGGCTCTTATATGATGTTGAGTTTTATTTTCTTCCTGCTTTGGATTTCTTCTTAATTTTGAGTATGAAATCATATGTTTGTGATTGTACTTTTGTAATGATGGCTTCAAATGTAAGTCTACTTGAAGGAGAAGTTTGATATATAAAGTACTTTATATTGTTTTGTCTCATCATTTTCTTTTGGAATTTTCCCTAAATTGCTTTACTCTAATTCTGTTTGTCTTGGATCCTATGAAAGATATTCTCTCATCAATGTCCTTTTTGAATCTAGAACTCAACATTCTTATCAGATTCTTAGAAAGCTTTGATCCAGATAATAGAAACGAGGTTTAGGATTAATGCAAATATTAGTCATCCAGAGGTTTAGGATTATTGACTTATCTACTGAGTTATGCTTTAATTGATATCATTCTTCACTAGCTTGGCAAAATAATTCACTACATTTCATATTGCAACACTCAGGCTTCGCTTGCCTCGGTAATTTGTTCCAAAGGCAAATCATTTGTCTTGGAGATTGATAATAAGCTGTGTAATATTCTTCTATGCATCCAATTTGACAATACTTAAAACTATGCACATCTTTCACTGCTTTTGAGGTGTTGAATTGCTCCACCCACATCCCCGTACTCACATCTTCCATCTTAAATAACTGTAAAAAACATAATAGTTCCCTCTTTTAAGCCAAAATCATTTGAATTTTAACTAATGTTCGAAGTGAATGTATATGTACCCTTAATTTACGTCTCTCGAAGTTTGATATGACAAACTGAGCAATATCGAATGACACTATGTACCTCGATTCATTTGGGTAAGGTGGATAATCTTCTTCTAGCCATTCCCATTTAGTTCTTGTACTTCATTTTTTCTCTCTCTATTTCTAAAACACCATGTGCAGTTTAGATAGATTTTTTAGAATAACATTTTACTTGCTAAAAGTATATGCAAGGTTATCCTAATCCATTAGCATTCACATATGAAAGATGTCTTTTTTATCCTTTCGAATATGCTCTTCAACCTCCACCTTAG

mRNA sequence

ATGCAGCTTGAGATTGAAGATCATCATCTCCAAGGCTCTCGAAAAAACCCTCGCATCATCTCGCACTGCCGTCATCTTCGTTCGCCATCTTCCGACGTTCAAATTGTGATAGTTCCGTTCGCGTCAGTCATCTCCACCATCATCTCCATTTGCGTCAGTCATCTCGCACCACCATCCGAATTATTTGTCTCCTCTCTTTCTGTTTACCTATTTTCTTTGTTCTGGGGTTTACTGATTTCTGTTGAAATCAGATTCTCGTTTTACTGTTCAGATGGATCGGTAGAGAAGTTCATCACTTGTCAAAATATTTCATTTCATTATGAAAATATAGGAAGGGACAAGGTATCGATACTAGTCTTTATTGAGTTCTTTTGTTTTTTGGGACAGGGCTTGAAAAACTTCGAGCTTGGCAAAATAATTCACTACATTTCATATTGCAACACTCAGGCTTCGCTTGCCTCGTATATGCAAGGTTATCCTAATCCATTAGCATTCACATATGAAAGATGTCTTTTTTATCCTTTCGAATATGCTCTTCAACCTCCACCTTAG

Coding sequence (CDS)

ATGCAGCTTGAGATTGAAGATCATCATCTCCAAGGCTCTCGAAAAAACCCTCGCATCATCTCGCACTGCCGTCATCTTCGTTCGCCATCTTCCGACGTTCAAATTGTGATAGTTCCGTTCGCGTCAGTCATCTCCACCATCATCTCCATTTGCGTCAGTCATCTCGCACCACCATCCGAATTATTTGTCTCCTCTCTTTCTGTTTACCTATTTTCTTTGTTCTGGGGTTTACTGATTTCTGTTGAAATCAGATTCTCGTTTTACTGTTCAGATGGATCGGTAGAGAAGTTCATCACTTGTCAAAATATTTCATTTCATTATGAAAATATAGGAAGGGACAAGGTATCGATACTAGTCTTTATTGAGTTCTTTTGTTTTTTGGGACAGGGCTTGAAAAACTTCGAGCTTGGCAAAATAATTCACTACATTTCATATTGCAACACTCAGGCTTCGCTTGCCTCGTATATGCAAGGTTATCCTAATCCATTAGCATTCACATATGAAAGATGTCTTTTTTATCCTTTCGAATATGCTCTTCAACCTCCACCTTAG

Protein sequence

MQLEIEDHHLQGSRKNPRIISHCRHLRSPSSDVQIVIVPFASVISTIISICVSHLAPPSELFVSSLSVYLFSLFWGLLISVEIRFSFYCSDGSVEKFITCQNISFHYENIGRDKVSILVFIEFFCFLGQGLKNFELGKIIHYISYCNTQASLASYMQGYPNPLAFTYERCLFYPFEYALQPPP
Homology
[Close]
BLAST of MELO3C035024.2.1 vs. TAIR10
Match: AT4G23000.1 (Calcineurin-like metallo-phosphoesterase superfamily protein)

HSP 1 Score: 46.2 bits (108), Expect = 2.5e-05
Identity = 20/24 (83.33%), Postives = 21/24 (87.50%), Query Frame = 0 

Query: 159 YPNPLAFTYERCLFYPFEYALQPP 183
           YPNP AFTYE+ LF PFEYALQPP
Sbjct: 437 YPNPSAFTYEKRLFCPFEYALQPP 460

[Close]
BLAST of MELO3C035024.2.1 vs. TAIR10
Match: AT4G11800.1 (Calcineurin-like metallo-phosphoesterase superfamily protein)

HSP 1 Score: 45.1 bits (105), Expect = 5.6e-05
Identity = 19/24 (79.17%), Postives = 21/24 (87.50%), Query Frame = 0 

Query: 159 YPNPLAFTYERCLFYPFEYALQPP 183
           YPNP +FTYE+ LF PFEYALQPP
Sbjct: 435 YPNPSSFTYEKRLFCPFEYALQPP 458

The following BLAST results are available for this feature:
BLAST of MELO3C035024.2.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C035024.2.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G23000.12.5e-0583.33Calcineurin-like metallo-phosphoesterase superfamily protein[more]
AT4G11800.15.6e-0579.17Calcineurin-like metallo-phosphoesterase superfamily protein[more]
BLAST of MELO3C035024.2.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C035024.2.1 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0016787 hydrolase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C035024.2MELO3C035024.2gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C035024.2.1.CDS.1MELO3C035024.2.1.CDS.1CDS
MELO3C035024.2.1.CDS.2MELO3C035024.2.1.CDS.2CDS
MELO3C035024.2.1.CDS.3MELO3C035024.2.1.CDS.3CDS
MELO3C035024.2.1.CDS.4MELO3C035024.2.1.CDS.4CDS
MELO3C035024.2.1.CDS.5MELO3C035024.2.1.CDS.5CDS
MELO3C035024.2.1.CDS.6MELO3C035024.2.1.CDS.6CDS
MELO3C035024.2.1.CDS.7MELO3C035024.2.1.CDS.7CDS
MELO3C035024.2.1.CDS.8MELO3C035024.2.1.CDS.8CDS
MELO3C035024.2.1.CDS.9MELO3C035024.2.1.CDS.9CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C035024.2.1.exon.1MELO3C035024.2.1.exon.1exon
MELO3C035024.2.1.exon.2MELO3C035024.2.1.exon.2exon
MELO3C035024.2.1.exon.3MELO3C035024.2.1.exon.3exon
MELO3C035024.2.1.exon.4MELO3C035024.2.1.exon.4exon
MELO3C035024.2.1.exon.5MELO3C035024.2.1.exon.5exon
MELO3C035024.2.1.exon.6MELO3C035024.2.1.exon.6exon
MELO3C035024.2.1.exon.7MELO3C035024.2.1.exon.7exon
MELO3C035024.2.1.exon.8MELO3C035024.2.1.exon.8exon
MELO3C035024.2.1.exon.9MELO3C035024.2.1.exon.9exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C035024.2.1MELO3C035024.2.1-proteinpolypeptide