MELO3C034629.2.1 (mRNA) Melon (DHL92) v3.6.1

Overview
NameMELO3C034629.2.1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionUnknown protein
Locationchr11 : 2200313 .. 2200810 (+)
Sequence length318
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAGTGAAGTGCTCAGAAAACTGAAAGATATGGATTACCAAGTGACGAGGAGAATTGGGGGAGATCAAAAGCGTCAGCAGTTTACTCTTTAGGAAGAAAGTTGGAACAAAATTTCGTTTCTAAAACTAAGGTGAAAAATCAAATTCATATCTTCAACTTCTTTCGATTTCAATTTCAATTTCCATTGCATCCAACCTTAAACTCTATAAATTCTTGCCCGTCTTTAATTATTTTTCCGAAATTCATGACCAGCGTTTTGGAAACGGTATGCAGAAAGAAAGACAGAGATGAGAGAGAGCTCACCGGCACGAGACTGCGGCGTCTGGATGAACGTTGGACGGAGGTGCAGCAGCGAAGCGACGGCGACGCGCGTGGGCGGCACTGTGGCTGAGCGAGCCGAGACGGTGAGAGATGTCGAGAGAGACAGCTGAGATCGGAATATGGCGAAGAAGGGAGGAAATCTAGTTTCCTAATTGCTTCAAATTAATTAAATA

mRNA sequence

ATGAAGAGTGAAGTGCTCAGAAAACTGAAAGATATGGATTACCAAGTGACGAGGAGAATTGGGGGAGATCAAAAGCCGTTTTGGAAACGGTATGCAGAAAGAAAGACAGAGATGAGAGAGAGCTCACCGGCACGAGACTGCGGCGTCTGGATGAACGTTGGACGGAGGTGCAGCAGCGAAGCGACGGCGACGCGCGTGGGCGGCACTGTGGCTGAGCGAGCCGAGACGGTGAGAGATGTCGAGAGAGACAGCTGAGATCGGAATATGGCGAAGAAGGGAGGAAATCTAGTTTCCTAATTGCTTCAAATTAATTAAATA

Coding sequence (CDS)

ATGAAGAGTGAAGTGCTCAGAAAACTGAAAGATATGGATTACCAAGTGACGAGGAGAATTGGGGGAGATCAAAAGCCGTTTTGGAAACGGTATGCAGAAAGAAAGACAGAGATGAGAGAGAGCTCACCGGCACGAGACTGCGGCGTCTGGATGAACGTTGGACGGAGGTGCAGCAGCGAAGCGACGGCGACGCGCGTGGGCGGCACTGTGGCTGAGCGAGCCGAGACGGTGAGAGATGTCGAGAGAGACAGCTGA

Protein sequence

MKSEVLRKLKDMDYQVTRRIGGDQKPFWKRYAERKTEMRESSPARDCGVWMNVGRRCSSEATATRVGGTVAERAETVRDVERDS
Homology
[Close]
BLAST of MELO3C034629.2.1 vs. NCBI nr
Match: KGN61781.1 (hypothetical protein Csa_2G245450 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 1.3e-23
Identity = 65/93 (69.89%), Postives = 69/93 (74.19%), Query Frame = 0 

Query: 1  MKSEVLRKLKDMDYQVTRRIGGDQK---------PFWKRYAERKTEMRESSPARDCGVWM 60
          MKSE LRKLK+MDYQV RRIGGDQK           WKRYAER  EM ESSPA+D G WM
Sbjct: 1  MKSEGLRKLKEMDYQVRRRIGGDQKRQQFTLYEEARWKRYAERNIEMEESSPAQDYGGWM 60

Query: 61 NVGRRCSSEATATRVGGTVAERAETVRDVERDS 85
          NVGRRCSS A AT VGG V  RAETVRDVER++
Sbjct: 61 NVGRRCSSGAAATCVGGAVPRRAETVRDVEREN 93

[Close]
BLAST of MELO3C034629.2.1 vs. TrEMBL
Match: tr|A0A0A0LP56|A0A0A0LP56_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G245450 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 8.7e-24
Identity = 65/93 (69.89%), Postives = 69/93 (74.19%), Query Frame = 0 

Query: 1  MKSEVLRKLKDMDYQVTRRIGGDQK---------PFWKRYAERKTEMRESSPARDCGVWM 60
          MKSE LRKLK+MDYQV RRIGGDQK           WKRYAER  EM ESSPA+D G WM
Sbjct: 1  MKSEGLRKLKEMDYQVRRRIGGDQKRQQFTLYEEARWKRYAERNIEMEESSPAQDYGGWM 60

Query: 61 NVGRRCSSEATATRVGGTVAERAETVRDVERDS 85
          NVGRRCSS A AT VGG V  RAETVRDVER++
Sbjct: 61 NVGRRCSSGAAATCVGGAVPRRAETVRDVEREN 93

The following BLAST results are available for this feature:
BLAST of MELO3C034629.2.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61781.11.3e-2369.89hypothetical protein Csa_2G245450 [Cucumis sativus][more]
BLAST of MELO3C034629.2.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C034629.2.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C034629.2.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LP56|A0A0A0LP56_CUCSA8.7e-2469.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G245450 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C034629.2MELO3C034629.2gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C034629.2.1.CDS.1MELO3C034629.2.1.CDS.1CDS
MELO3C034629.2.1.CDS.2MELO3C034629.2.1.CDS.2CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C034629.2.1.exon.1MELO3C034629.2.1.exon.1exon
MELO3C034629.2.1.exon.2MELO3C034629.2.1.exon.2exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C034629.2.1.three_prime_UTR.1MELO3C034629.2.1.three_prime_UTR.1three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C034629.2.1MELO3C034629.2.1-proteinpolypeptide