MELO3C034605.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C034605.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	ATP-binding/protein serine/threonine kinase
Location	chr11 : 1533202 .. 1533777 (-)
Sequence length	480

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAATCTTTCGAATCATATAATACTCACCAACTAGAAATCGAATATGGTGAAAACCTCGACAAAGTTCGCTCTCTTGTTCCTAATGTTTTTTGTTATCTCAGGTATATCAATCAATTTTAACTGTTTATAGCCGATTTTTTTTCTTTTCGCAATAGTTTATCTTGTTGTATGACAATTTAACAATTACATTACTTTAGAAACACTGTTCGTGTCAGATGCCAGAAATGTTGTAAACATTCCATGCAAAAGTCGTATTGATTGTTCTGATCCGTGGGACTGTGATTGCAAGCTCAACTTATGTTTTTGTCAACCAAATGGATCAGAAAAGAAATTTCTTCACAAAGCCTTTTCTGAATATTTGAGAGATGAAAAGACAACGCTCCTAGAAAATTAACATATGTTCTCCACCCAAATTTAGATCTACATACATAGCTCATAAATCGAAAGAAATTGTATTTTACTACGATATACATAAATAGTATATGACTATAATTTCTCTACCAGAACAGTAATATATGACAGCATAAATAATCAATTCATCGATGTTACGTTTGTATACTCTAATATTAATATCT

mRNA sequence

CAAATCTTTCGAATCATATAATACTCACCAACTAGAAATCGAATATGGTGAAAACCTCGACAAAGTTCGCTCTCTTGTTCCTAATGTTTTTTGTTATCTCAGAAACACTGTTCGTGTCAGATGCCAGAAATGTTGTAAACATTCCATGCAAAAGTCGTATTGATTGTTCTGATCCGTGGGACTGTGATTGCAAGCTCAACTTATGTTTTTGTCAACCAAATGGATCAGAAAAGAAATTTCTTCACAAAGCCTTTTCTGAATATTTGAGAGATGAAAAGACAACGCTCCTAGAAAATTAACATATGTTCTCCACCCAAATTTAGATCTACATACATAGCTCATAAATCGAAAGAAATTGTATTTTACTACGATATACATAAATAGTATATGACTATAATTTCTCTACCAGAACAGTAATATATGACAGCATAAATAATCAATTCATCGATGTTACGTTTGTATACTCTAATATTAATATCT

Coding sequence (CDS)

ATGGTGAAAACCTCGACAAAGTTCGCTCTCTTGTTCCTAATGTTTTTTGTTATCTCAGAAACACTGTTCGTGTCAGATGCCAGAAATGTTGTAAACATTCCATGCAAAAGTCGTATTGATTGTTCTGATCCGTGGGACTGTGATTGCAAGCTCAACTTATGTTTTTGTCAACCAAATGGATCAGAAAAGAAATTTCTTCACAAAGCCTTTTCTGAATATTTGAGAGATGAAAAGACAACGCTCCTAGAAAATTAA

Protein sequence

MVKTSTKFALLFLMFFVISETLFVSDARNVVNIPCKSRIDCSDPWDCDCKLNLCFCQPNGSEKKFLHKAFSEYLRDEKTTLLEN

Homology

[Close]

BLAST of MELO3C034605.2.1 vs. NCBI nr
Match: KGN61993.1 (hypothetical protein Csa_2G285280 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 2.5e-30
Identity = 67/82 (81.71%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 1  MVKTSTKFALLFLMFFVISETLFVSDARNVVNIPCKSRIDCSDPWDCDCKLNLCFCQPNG 60
          MVK+STK ALL LMFF+ISET FV+DARNVVNIPC SRIDCSDPWDCDCKLNLCFC P+G
Sbjct: 1  MVKSSTKLALLLLMFFIISET-FVADARNVVNIPCNSRIDCSDPWDCDCKLNLCFCHPHG 60

Query: 61 SEKKFLHKAFSEYLRDEKTTLL 83
           EKKFLH AF E+LR+EKTT L
Sbjct: 61 LEKKFLHNAFPEHLREEKTTSL 81

[Close]

BLAST of MELO3C034605.2.1 vs. NCBI nr
Match: KGN61957.1 (hypothetical protein Csa_2G276990 [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 4.6e-29
Identity = 63/78 (80.77%), Postives = 69/78 (88.46%), Query Frame = 0


Query: 1  MVKTSTKFALLFLMFFVISETLFVSDARNVVNIPCKSRIDCSDPWDCDCKLNLCFCQPNG 60
          MVK  TKFAL FLM F+ISE LFVSDARNVVNIPC+SRIDCSDPWDCDCKLNLCFC P+G
Sbjct: 1  MVKPLTKFALFFLMVFIISEKLFVSDARNVVNIPCQSRIDCSDPWDCDCKLNLCFCHPHG 60

Query: 61 SEKKFLHKAFSEYLRDEK 79
           EKKFLHKAF E LR+++
Sbjct: 61 LEKKFLHKAFPESLREDR 78

[Close]

BLAST of MELO3C034605.2.1 vs. TrEMBL
Match: tr|A0A0A0LJR0|A0A0A0LJR0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G285280 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.6e-30
Identity = 67/82 (81.71%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 1  MVKTSTKFALLFLMFFVISETLFVSDARNVVNIPCKSRIDCSDPWDCDCKLNLCFCQPNG 60
          MVK+STK ALL LMFF+ISET FV+DARNVVNIPC SRIDCSDPWDCDCKLNLCFC P+G
Sbjct: 1  MVKSSTKLALLLLMFFIISET-FVADARNVVNIPCNSRIDCSDPWDCDCKLNLCFCHPHG 60

Query: 61 SEKKFLHKAFSEYLRDEKTTLL 83
           EKKFLH AF E+LR+EKTT L
Sbjct: 61 LEKKFLHNAFPEHLREEKTTSL 81

[Close]

BLAST of MELO3C034605.2.1 vs. TrEMBL
Match: tr|A0A0A0LMG3|A0A0A0LMG3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G276990 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.1e-29
Identity = 63/78 (80.77%), Postives = 69/78 (88.46%), Query Frame = 0


Query: 1  MVKTSTKFALLFLMFFVISETLFVSDARNVVNIPCKSRIDCSDPWDCDCKLNLCFCQPNG 60
          MVK  TKFAL FLM F+ISE LFVSDARNVVNIPC+SRIDCSDPWDCDCKLNLCFC P+G
Sbjct: 1  MVKPLTKFALFFLMVFIISEKLFVSDARNVVNIPCQSRIDCSDPWDCDCKLNLCFCHPHG 60

Query: 61 SEKKFLHKAFSEYLRDEK 79
           EKKFLHKAF E LR+++
Sbjct: 61 LEKKFLHKAFPESLREDR 78

[Close]

BLAST of MELO3C034605.2.1 vs. TrEMBL
Match: tr|A0A2N9FRQ0|A0A2N9FRQ0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17804 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.1e-06
Identity = 33/81 (40.74%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 1  MVKTSTKFALLFLMFFVISETLFVSDARNVVNIPCKSRIDCSDPWDCDCKLNLCFCQPNG 60
          M K+S K AL+ ++  + S   F  DARNVV IPC++  DC D   CDC  N C C   G
Sbjct: 1  MEKSSLKLALIVVLLLIASSFQFRVDARNVVVIPCETYNDCRDSAKCDCVHNHCRCP--G 60

Query: 61 SEKKFLHKAFSEYLRDEKTTL 82
           E+ F  KA + +L+ +  +L
Sbjct: 61 EEQDFFTKAITNHLKHDLFSL 79

The following BLAST results are available for this feature:

BLAST of MELO3C034605.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61993.1	2.5e-30	81.71	hypothetical protein Csa_2G285280 [Cucumis sativus]	[more]
KGN61957.1	4.6e-29	80.77	hypothetical protein Csa_2G276990 [Cucumis sativus]	[more]

BLAST of MELO3C034605.2.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C034605.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C034605.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LJR0\|A0A0A0LJR0_CUCSA	1.6e-30	81.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G285280 PE=4 SV=1	[more]
tr\|A0A0A0LMG3\|A0A0A0LMG3_CUCSA	3.1e-29	80.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G276990 PE=4 SV=1	[more]
tr\|A0A2N9FRQ0\|A0A2N9FRQ0_FAGSY	8.1e-06	40.74	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17804 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016301	kinase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C034605.2	MELO3C034605.2	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C034605.2.1	MELO3C034605.2.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C034605.2.1.five_prime_UTR.1	MELO3C034605.2.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C034605.2.1.exon.2	MELO3C034605.2.1.exon.2	exon
MELO3C034605.2.1.exon.1	MELO3C034605.2.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C034605.2.1.CDS.2	MELO3C034605.2.1.CDS.2	CDS
MELO3C034605.2.1.CDS.1	MELO3C034605.2.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C034605.2.1.three_prime_UTR.1	MELO3C034605.2.1.three_prime_UTR.1	three_prime_UTR