MELO3C034571.2.1 (mRNA) Melon (DHL92) v3.6.1

Overview
NameMELO3C034571.2.1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionglial fibrillary acidic protein-like
Locationchr11 : 1621587 .. 1622004 (-)
Sequence length418
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCTCTATGAAAATCGAGGTTCTACAACATTCGATTAAAGAATACAAGTCTTAGCTTATAGAAGCGGAAAGCAAAAATAGATTTTTATAAAAAGCCGTTAACAGTTCTGAAAGCCAGTTGCTGATATGTCGCAAAACAAGGAAGGTCGCAATAGATGACTACACTCAATTAATAGAAAAATATCAAGAAATGTCGATAGATTTCATGATGTGGAGGGACGAGTATGAGATATTGAGATGGAAGTATGATAGTGCTAGAGGTCAGATGGAACGAGGGGCTGAAAAATTAAGACAAATGGCGAGGATGGCAGATCAACTCTCAGTGCAAGCTAGGACTCTCTGACAAAGTGTTATACGTATACGCGATACCAACAGAGAATTGTCTCATTTTCTAGGAATCACAGGGTAATACCTTGGAC

mRNA sequence

ACCTCTATGAAAATCGAGGTTCTACAACATTCGATTAAAGAATACAAGTCTTAGCTTATAGAAGCGGAAAGCAAAAATAGATTTTTATAAAAAGCCGTTAACAGTTCTGAAAGCCAGTTGCTGATATGTCGCAAAACAAGGAAGGTCGCAATAGATGACTACACTCAATTAATAGAAAAATATCAAGAAATGTCGATAGATTTCATGATGTGGAGGGACGAGTATGAGATATTGAGATGGAAGTATGATAGTGCTAGAGGTCAGATGGAACGAGGGGCTGAAAAATTAAGACAAATGGCGAGGATGGCAGATCAACTCTCAGTGCAAGCTAGGACTCTCTGACAAAGTGTTATACGTATACGCGATACCAACAGAGAATTGTCTCATTTTCTAGGAATCACAGGGTAATACCTTGGAC

Coding sequence (CDS)

ATGTCGATAGATTTCATGATGTGGAGGGACGAGTATGAGATATTGAGATGGAAGTATGATAGTGCTAGAGGTCAGATGGAACGAGGGGCTGAAAAATTAAGACAAATGGCGAGGATGGCAGATCAACTCTCAGTGCAAGCTAGGACTCTCTGA

Protein sequence

MSIDFMMWRDEYEILRWKYDSARGQMERGAEKLRQMARMADQLSVQARTL
Homology
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BLAST of MELO3C034571.2.1 vs. NCBI nr
Match: XP_008464352.1 (PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo])

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-11
Identity = 40/50 (80.00%), Postives = 43/50 (86.00%), Query Frame = 0 

Query: 1   MSIDFMMWRDEYEILRWKYDSARGQMERGAEKLRQMARMADQLSVQARTL 51
           MSIDFMMW+DEYE LR KYD A  +MERGAEKLRQMA +ADQ SVQARTL
Sbjct: 181 MSIDFMMWKDEYETLRRKYDDAIRRMERGAEKLRQMASVADQFSVQARTL 230

[Close]
BLAST of MELO3C034571.2.1 vs. TrEMBL
Match: tr|A0A1S3CLQ1|A0A1S3CLQ1_CUCME (glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.0e-11
Identity = 40/50 (80.00%), Postives = 43/50 (86.00%), Query Frame = 0 

Query: 1   MSIDFMMWRDEYEILRWKYDSARGQMERGAEKLRQMARMADQLSVQARTL 51
           MSIDFMMW+DEYE LR KYD A  +MERGAEKLRQMA +ADQ SVQARTL
Sbjct: 181 MSIDFMMWKDEYETLRRKYDDAIRRMERGAEKLRQMASVADQFSVQARTL 230

The following BLAST results are available for this feature:
BLAST of MELO3C034571.2.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008464352.11.5e-1180.00PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo][more]
BLAST of MELO3C034571.2.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C034571.2.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C034571.2.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CLQ1|A0A1S3CLQ1_CUCME1.0e-1180.00glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C034571.2MELO3C034571.2gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C034571.2.1.five_prime_UTR.1MELO3C034571.2.1.five_prime_UTR.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C034571.2.1.CDS.1MELO3C034571.2.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C034571.2.1.three_prime_UTR.1MELO3C034571.2.1.three_prime_UTR.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C034571.2.1.exon.1MELO3C034571.2.1.exon.1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C034571.2.1MELO3C034571.2.1-proteinpolypeptide