MELO3C034571.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C034571.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionglial fibrillary acidic protein-like
Locationchr11 : 1621587 .. 1622004 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCTCTATGAAAATCGAGGTTCTACAACATTCGATTAAAGAATACAAGTCTTAGCTTATAGAAGCGGAAAGCAAAAATAGATTTTTATAAAAAGCCGTTAACAGTTCTGAAAGCCAGTTGCTGATATGTCGCAAAACAAGGAAGGTCGCAATAGATGACTACACTCAATTAATAGAAAAATATCAAGAAATGTCGATAGATTTCATGATGTGGAGGGACGAGTATGAGATATTGAGATGGAAGTATGATAGTGCTAGAGGTCAGATGGAACGAGGGGCTGAAAAATTAAGACAAATGGCGAGGATGGCAGATCAACTCTCAGTGCAAGCTAGGACTCTCTGACAAAGTGTTATACGTATACGCGATACCAACAGAGAATTGTCTCATTTTCTAGGAATCACAGGGTAATACCTTGGAC

mRNA sequence

ACCTCTATGAAAATCGAGGTTCTACAACATTCGATTAAAGAATACAAGTCTTAGCTTATAGAAGCGGAAAGCAAAAATAGATTTTTATAAAAAGCCGTTAACAGTTCTGAAAGCCAGTTGCTGATATGTCGCAAAACAAGGAAGGTCGCAATAGATGACTACACTCAATTAATAGAAAAATATCAAGAAATGTCGATAGATTTCATGATGTGGAGGGACGAGTATGAGATATTGAGATGGAAGTATGATAGTGCTAGAGGTCAGATGGAACGAGGGGCTGAAAAATTAAGACAAATGGCGAGGATGGCAGATCAACTCTCAGTGCAAGCTAGGACTCTCTGACAAAGTGTTATACGTATACGCGATACCAACAGAGAATTGTCTCATTTTCTAGGAATCACAGGGTAATACCTTGGAC

Coding sequence (CDS)

ATGTCGATAGATTTCATGATGTGGAGGGACGAGTATGAGATATTGAGATGGAAGTATGATAGTGCTAGAGGTCAGATGGAACGAGGGGCTGAAAAATTAAGACAAATGGCGAGGATGGCAGATCAACTCTCAGTGCAAGCTAGGACTCTCTGA

Protein sequence

MSIDFMMWRDEYEILRWKYDSARGQMERGAEKLRQMARMADQLSVQARTL
Homology
[Close]
BLAST of MELO3C034571.2 vs. NCBI nr
Match: XP_008464352.1 (PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo])

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-11
Identity = 40/50 (80.00%), Postives = 43/50 (86.00%), Query Frame = 0 

Query: 1   MSIDFMMWRDEYEILRWKYDSARGQMERGAEKLRQMARMADQLSVQARTL 51
           MSIDFMMW+DEYE LR KYD A  +MERGAEKLRQMA +ADQ SVQARTL
Sbjct: 181 MSIDFMMWKDEYETLRRKYDDAIRRMERGAEKLRQMASVADQFSVQARTL 230

[Close]
BLAST of MELO3C034571.2 vs. TrEMBL
Match: tr|A0A1S3CLQ1|A0A1S3CLQ1_CUCME (glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.0e-11
Identity = 40/50 (80.00%), Postives = 43/50 (86.00%), Query Frame = 0 

Query: 1   MSIDFMMWRDEYEILRWKYDSARGQMERGAEKLRQMARMADQLSVQARTL 51
           MSIDFMMW+DEYE LR KYD A  +MERGAEKLRQMA +ADQ SVQARTL
Sbjct: 181 MSIDFMMWKDEYETLRRKYDDAIRRMERGAEKLRQMASVADQFSVQARTL 230

The following BLAST results are available for this feature:
BLAST of MELO3C034571.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008464352.11.5e-1180.00PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo][more]
BLAST of MELO3C034571.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C034571.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C034571.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CLQ1|A0A1S3CLQ1_CUCME1.0e-1180.00glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034571.2.1MELO3C034571.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C034571.2Cucumber (Gy14) v2cgybmedB074
MELO3C034571.2Cucumber (Gy14) v2cgybmedB449
MELO3C034571.2Cucumber (Gy14) v1cgymedB148
MELO3C034571.2Cucumber (Gy14) v1cgymedB608
MELO3C034571.2Cucurbita maxima (Rimu)cmamedB580
MELO3C034571.2Cucurbita maxima (Rimu)cmamedB628
MELO3C034571.2Cucurbita moschata (Rifu)cmomedB568
MELO3C034571.2Cucurbita moschata (Rifu)cmomedB617
MELO3C034571.2Cucurbita pepo (Zucchini)cpemedB253
MELO3C034571.2Cucurbita pepo (Zucchini)cpemedB293
MELO3C034571.2Wild cucumber (PI 183967)cpimedB081
MELO3C034571.2Cucurbita pepo (Zucchini)cpemedB786
MELO3C034571.2Wild cucumber (PI 183967)cpimedB263
MELO3C034571.2Wild cucumber (PI 183967)cpimedB503
MELO3C034571.2Cucumber (Chinese Long) v2cumedB081
MELO3C034571.2Cucumber (Chinese Long) v2cumedB263
MELO3C034571.2Cucumber (Chinese Long) v2cumedB493
MELO3C034571.2Melon (DHL92) v3.6.1medmedB041
MELO3C034571.2Bottle gourd (USVL1VR-Ls)lsimedB047
MELO3C034571.2Bottle gourd (USVL1VR-Ls)lsimedB090
MELO3C034571.2Bottle gourd (USVL1VR-Ls)lsimedB448
MELO3C034571.2Watermelon (Charleston Gray)medwcgB106
MELO3C034571.2Watermelon (Charleston Gray)medwcgB080
MELO3C034571.2Watermelon (97103) v1medwmB124
MELO3C034571.2Watermelon (97103) v1medwmB130
MELO3C034571.2Silver-seed gourdcarmedB0111
MELO3C034571.2Silver-seed gourdcarmedB0314
MELO3C034571.2Silver-seed gourdcarmedB0329
MELO3C034571.2Cucumber (Chinese Long) v3cucmedB089
MELO3C034571.2Cucumber (Chinese Long) v3cucmedB518
MELO3C034571.2Watermelon (97103) v2medwmbB082
MELO3C034571.2Watermelon (97103) v2medwmbB105
MELO3C034571.2Wax gourdmedwgoB133