MELO3C034570.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C034570.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Transmembrane protein, putative
Location	chr11 : 1622719 .. 1623699 (-)
Sequence length	981

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGATACTTACGCGTTTGAGGCTGTTGTCCAATTGATTCCTAATGAAGACTTGTGGGAGAATGTATCTCAGTGGTCGGAACATTTTCAACTAGAGTCAGGAGTGAGTTGGCTAAAGAAATTAGAAGTTTCACTTCCAAAGACTTGTCAGTTGGGATTCATCAACAATAACCTGGAAGAGTTAAAAAGTTTATGGGAAAACTTAATGTTGGAGCATAGAGTAGAGTTTACAAAAGCATATGGAAGCATAGGTGACATTTTATACACTACCATTAGTACATCAACTTTGCAAGCTTTGTCATATTTCTGGGACCCTATGTTGAAGTGTTTCACGTTCAACACGTTTGACTTAACTCCTACTATAGAAGAATATCAAGCACTTATTAGCCTACCAGTTGATAGAAGGAATAAGCCTTATATCTATGATCGAAAGTTGACTCTACAACGGTCACTATAAAAGTTTATGGGTGACATTCATGCATCTGAGACAAAAAAATAGATGAAGACAAAAGAAGGTAAGAATTGTATTTCCATCAATTAGCTCATCAATCTTGTGGTGGTTGTTTATCAGGGGAAGAAAGGTTTGTCTATCATCGCATTATGTATCTATGGAACAATTATTTTTCCTAGAATTAAAGGATATGCTGAAGAAAAGGTTGTTAAGATTTTTGTTGGGATAGAACGAGGGGTAAACCCTGTTATCTCAATCATGGCAGAGACTTTCAGATCGCTAAATCATTGTCGAATCCAAGGCAAAGGAAAATTCTTTAGCTGTGCTCCTATGCTCTTCATTTGGATTTCCAGTCATCTAAGGTATCTTAATAATTTTGGATATCCTAAAATAAAATTCAGCAGTCCATGGAATAATACAAGAAACACTATTGGAGAATTCAATAGTGCACACTGGAATCCAAAGGATCCAGAATTTGGAGTTTGGATGCAGTTTTTCAGACATTTAACGATAGTAGAAGCAATTTGG

mRNA sequence

ATGGTAGATACTTACGCGTTTGAGGCTGTTGTCCAATTGATTCCTAATGAAGACTTGTGGGAGAATGTATCTCAGTGGTCGGAACATTTTCAACTAGAGTCAGGAGTGAGTTGGCTAAAGAAATTAGAAGTTTCACTTCCAAAGACTTGTCAGTTGGGATTCATCAACAATAACCTGGAAGAGTTAAAAAGTTTATGGGAAAACTTAATGTTGGAGCATAGAGTAGAGTTTACAAAAGCATATGGAAGCATAGGTGACATTTTATACACTACCATTAGTACATCAACTTTGCAAGCTTTGTCATATTTCTGGGACCCTATGTTGAAGTGTTTCACGTTCAACACGTTTGACTTAACTCCTACTATAGAAGAATATCAAGCACTTATTAGCCTACCAGTTGATAGAAGGAATAAGCCTTATATCTATGATCGAAAGTTGACTCTACAACGGTCACTATAAAAGTTTATGGGTGACATTCATGCATCTGAGACAAAAAAATAGATGAAGACAAAAGAAGGTAAGAATTGTATTTCCATCAATTAGCTCATCAATCTTGTGGTGGTTGTTTATCAGGGGAAGAAAGGTTTGTCTATCATCGCATTATGTATCTATGGAACAATTATTTTTCCTAGAATTAAAGGATATGCTGAAGAAAAGGTTGTTAAGATTTTTGTTGGGATAGAACGAGGGGTAAACCCTGTTATCTCAATCATGGCAGAGACTTTCAGATCGCTAAATCATTGTCGAATCCAAGGCAAAGGAAAATTCTTTAGCTGTGCTCCTATGCTCTTCATTTGGATTTCCAGTCATCTAAGGTATCTTAATAATTTTGGATATCCTAAAATAAAATTCAGCAGTCCATGGAATAATACAAGAAACACTATTGGAGAATTCAATAGTGCACACTGGAATCCAAAGGATCCAGAATTTGGAGTTTGGATGCAGTTTTTCAGACATTTAACGATAGTAGAAGCAATTTGG

Coding sequence (CDS)

ATGGTAGATACTTACGCGTTTGAGGCTGTTGTCCAATTGATTCCTAATGAAGACTTGTGGGAGAATGTATCTCAGTGGTCGGAACATTTTCAACTAGAGTCAGGAGTGAGTTGGCTAAAGAAATTAGAAGTTTCACTTCCAAAGACTTGTCAGTTGGGATTCATCAACAATAACCTGGAAGAGTTAAAAAGTTTATGGGAAAACTTAATGTTGGAGCATAGAGTAGAGTTTACAAAAGCATATGGAAGCATAGGTGACATTTTATACACTACCATTAGTACATCAACTTTGCAAGCTTTGTCATATTTCTGGGACCCTATGTTGAAGTGTTTCACGTTCAACACGTTTGACTTAACTCCTACTATAGAAGAATATCAAGCACTTATTAGCCTACCAGTTGATAGAAGGAATAAGCCTTATATCTATGATCGAAAGTTGACTCTACAACGGTCACTATAA

Protein sequence

MVDTYAFEAVVQLIPNEDLWENVSQWSEHFQLESGVSWLKKLEVSLPKTCQLGFINNNLEELKSLWENLMLEHRVEFTKAYGSIGDILYTTISTSTLQALSYFWDPMLKCFTFNTFDLTPTIEEYQALISLPVDRRNKPYIYDRKLTLQRSL

Homology

[Close]

BLAST of MELO3C034570.2.1 vs. NCBI nr
Match: KGN65325.1 (hypothetical protein Csa_1G328370 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 6.9e-31
Identity = 64/117 (54.70%), Postives = 85/117 (72.65%), Query Frame = 0


Query: 1   MVDTYAFEAVVQLIPNEDLWENVSQWSEHFQLESGVSWLKKLEVSLPKTCQLGFINNNLE 60
           M+ T++   V Q  P+ED WE ++QW E  Q E+   W K +E+SLP+TC+L  +NN++E
Sbjct: 1   MIGTHSPNLVAQNFPSEDSWEGMTQWLEKLQQETDTIWPKSIELSLPQTCRLEIVNNSME 60

Query: 61  ELKSLWENLMLEHRVEFTKAYGSIGDILYTTISTSTLQALSYFWDPMLKCFTFNTFD 118
            LKSLWE+L  EHR+EF KAY +I D+ YT+I+   LQAL  FWDP+LKCFTFNTFD
Sbjct: 61  GLKSLWESLTKEHRIEFVKAYRNITDLKYTSINAHALQALVQFWDPVLKCFTFNTFD 117

[Close]

BLAST of MELO3C034570.2.1 vs. NCBI nr
Match: XP_022147190.1 (uncharacterized protein LOC111016201 [Momordica charantia])

HSP 1 Score: 106.3 bits (264), Expect = 9.3e-20
Identity = 52/132 (39.39%), Postives = 78/132 (59.09%), Query Frame = 0


Query: 21  ENVSQWSEHFQLESGVSWLKKLEVSLPKTCQLGFINNNLEELKSLWENLMLEHRVEFTKA 80
           E V QWSE+ Q   G +  + + +  P    + F  N L+ LK LWE L  + + +F K 
Sbjct: 17  EIVCQWSENMQHTHGDALSQNVIMPFP---NVTFPENQLDTLKRLWEGLRPDRKTQFIKK 76

Query: 81  YGSIGDILYTTISTSTLQALSYFWDPMLKCFTFNTFDLTPTIEEYQALISLPVDRRNKPY 140
           YG I  +LY  ++ S L+AL   WDP  +CFTF++ D+TPTIEEY  L+ +P+  + + Y
Sbjct: 77  YGHIAQLLYVRVNFSVLRALVQHWDPPYRCFTFSSMDITPTIEEYHTLLQIPLQEKIEVY 136

Query: 141 IYDRKLTLQRSL 153
            YD   TL+R++
Sbjct: 137 SYDGGFTLKRAV 145

[Close]

BLAST of MELO3C034570.2.1 vs. NCBI nr
Match: XP_012477828.1 (PREDICTED: uncharacterized protein LOC105793466 [Gossypium raimondii])

HSP 1 Score: 85.5 bits (210), Expect = 1.7e-13
Identity = 46/131 (35.11%), Postives = 71/131 (54.20%), Query Frame = 0


Query: 23  VSQWSEHFQLESGVSWLKKLEVSLPKTCQLGFINNNLEELKSLWENLMLEHRVEFTKAYG 82
           V  WS   Q   G S  +     LP+   L    N+L++L  +W+    + R  FT+ YG
Sbjct: 15  VRDWSSRTQKVKGDSLKEGYTSDLPERVTLNVRQNDLKDLTMIWKQWDSDTRGIFTEKYG 74

Query: 83  SIGDILYTTISTSTLQALSYFWDPMLKCFTFNTFDLTPTIEEYQALISLPVDRRNKPYIY 142
            I  ++   ++   +QA+  FWDP  +CFTFN  D+TPTIEEY AL+ +   + NK Y+ 
Sbjct: 75  DIAHLIAIDVNEQLIQAMVRFWDPAYQCFTFNQEDMTPTIEEYVALLRIDNVQFNKIYVK 134

Query: 143 DRK-LTLQRSL 153
           + K +T ++ L
Sbjct: 135 EPKPMTFKKKL 145

[Close]

BLAST of MELO3C034570.2.1 vs. NCBI nr
Match: XP_012442150.1 (PREDICTED: uncharacterized protein LOC105767182 [Gossypium raimondii])

HSP 1 Score: 85.1 bits (209), Expect = 2.2e-13
Identity = 46/128 (35.94%), Postives = 69/128 (53.91%), Query Frame = 0


Query: 26  WSEHFQLESGVSWLKKLEVSLPKTCQLGFINNNLEELKSLWENLMLEHRVEFTKAYGSIG 85
           WS   Q   G S  +     LP+   L    N+LE+L  +W+    + R  FT+ YG I 
Sbjct: 6   WSLRTQKVKGDSLKEGYTSDLPERVTLSARQNDLEDLTRIWKQWDSDTRSIFTEKYGDIA 65

Query: 86  DILYTTISTSTLQALSYFWDPMLKCFTFNTFDLTPTIEEYQALISLPVDRRNKPYIYDRK 145
            ++   ++   +QA+  FWDP   CFTFN  D+TPTIEEY AL+ +   + NK Y+ + K
Sbjct: 66  HLIAIDVNEQLIQAMVQFWDPAYHCFTFNQEDMTPTIEEYAALLRIDNVQLNKIYVKEPK 125

Query: 146 -LTLQRSL 153
            +T ++ L
Sbjct: 126 PMTFKKKL 133

[Close]

BLAST of MELO3C034570.2.1 vs. NCBI nr
Match: XP_012435287.1 (PREDICTED: uncharacterized protein LOC105761890 [Gossypium raimondii])

HSP 1 Score: 84.7 bits (208), Expect = 2.9e-13
Identity = 46/131 (35.11%), Postives = 70/131 (53.44%), Query Frame = 0


Query: 23  VSQWSEHFQLESGVSWLKKLEVSLPKTCQLGFINNNLEELKSLWENLMLEHRVEFTKAYG 82
           V  WS   Q   G S  +     LP+        N+LE+L  +W+    + R  FT+ YG
Sbjct: 15  VRDWSLRTQKAKGDSLKEGYTSDLPERVTSNVRQNDLEDLTRIWKQWDSDTRGIFTEKYG 74

Query: 83  SIGDILYTTISTSTLQALSYFWDPMLKCFTFNTFDLTPTIEEYQALISLPVDRRNKPYIY 142
            I  ++   ++   +QA+  FWDP  +CFTFN  D+TPTIEEY AL+ +   + NK Y+ 
Sbjct: 75  DIAHLIAIDVNEQLIQAMVRFWDPAYQCFTFNQEDMTPTIEEYAALLRIDNVQLNKIYVK 134

Query: 143 DRK-LTLQRSL 153
           + K +T ++ L
Sbjct: 135 EPKPMTFKKKL 145

[Close]

BLAST of MELO3C034570.2.1 vs. TrEMBL
Match: tr|A0A0A0LTS2|A0A0A0LTS2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G328370 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.5e-31
Identity = 64/117 (54.70%), Postives = 85/117 (72.65%), Query Frame = 0


Query: 1   MVDTYAFEAVVQLIPNEDLWENVSQWSEHFQLESGVSWLKKLEVSLPKTCQLGFINNNLE 60
           M+ T++   V Q  P+ED WE ++QW E  Q E+   W K +E+SLP+TC+L  +NN++E
Sbjct: 1   MIGTHSPNLVAQNFPSEDSWEGMTQWLEKLQQETDTIWPKSIELSLPQTCRLEIVNNSME 60

Query: 61  ELKSLWENLMLEHRVEFTKAYGSIGDILYTTISTSTLQALSYFWDPMLKCFTFNTFD 118
            LKSLWE+L  EHR+EF KAY +I D+ YT+I+   LQAL  FWDP+LKCFTFNTFD
Sbjct: 61  GLKSLWESLTKEHRIEFVKAYRNITDLKYTSINAHALQALVQFWDPVLKCFTFNTFD 117

[Close]

BLAST of MELO3C034570.2.1 vs. TrEMBL
Match: tr|A0A061G4J9|A0A061G4J9_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_016087 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 9.5e-13
Identity = 40/107 (37.38%), Postives = 57/107 (53.27%), Query Frame = 0


Query: 46  LPKTCQLGFINNNLEELKSLWENLMLEHRVEFTKAYGSIGDILYTTISTSTLQALSYFWD 105
           LP+   L    N+  E+  +WE   L HR  F   YG I  +LY  +    L+A+  FWD
Sbjct: 41  LPERVHLDLQQNDFTEMVGIWEQWRLAHRDNFQNKYGHIAWLLYVPVDDQMLRAIVQFWD 100

Query: 106 PMLKCFTFNTFDLTPTIEEYQALISLPVDRRNKPYIYDRKLTLQRSL 153
           P  +CF FN  D+TPTIEEY +L+ +   + +K Y   +K   +R L
Sbjct: 101 PSYRCFVFNKVDMTPTIEEYSSLLRIDHMQPDKIYWRAQKTVHRRKL 147

[Close]

BLAST of MELO3C034570.2.1 vs. TrEMBL
Match: tr|A0A061FZF9|A0A061FZF9_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_014964 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.1e-12
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 0


Query: 45  SLPKTCQLGFINNNLEELKSLWENLMLEHRVEFTKAYGSIGDILYTTISTSTLQALSYFW 104
           +LP+   L    N+L E+  +WE     HR  F   YG I  +LY  +    L+A+  FW
Sbjct: 40  NLPERVHLDLQQNDLTEMVGIWEQWRRAHRDNFQNKYGHIAWLLYVPVDDQMLRAIVQFW 99

Query: 105 DPMLKCFTFNTFDLTPTIEEYQALISLPVDRRNKPYIYDRKLTLQRSL 153
           DP  +CF FN  D+TPTIEEY +L+ +   + +K Y   +K   +R L
Sbjct: 100 DPSYRCFVFNKVDMTPTIEEYSSLLRIDHMQPDKIYWRAQKTGHRRKL 147

[Close]

BLAST of MELO3C034570.2.1 vs. TrEMBL
Match: tr|A0A0B0P440|A0A0B0P440_GOSAR (Nucleoside-triphosphatase THEP1 OS=Gossypium arboreum OX=29729 GN=F383_01096 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.8e-12
Identity = 40/119 (33.61%), Postives = 61/119 (51.26%), Query Frame = 0


Query: 22  NVSQWSEHFQLESGVSWLKKLEVSLPKTCQLGFINNNLEELKSLWENLMLEHRVEFTKAY 81
           NV +WSE  QLE G S        +    ++    NNL+ELK +W+    + +  F   Y
Sbjct: 14  NVHRWSEQTQLEKGDSIAMGYVSEMSDYTRISVTQNNLQELKEIWDRWGKKTKQLFYDTY 73

Query: 82  GSIGDILYTTISTSTLQALSYFWDPMLKCFTFNTFDLTPTIEEYQALISLPVDRRNKPY 141
           G +  +L   +     +AL+ FW+P   CFTF   DL PT+E+Y AL+  P  + ++ Y
Sbjct: 74  GDLPYLLDVQVEEHLFRALAQFWNPAYSCFTFGEVDLVPTVEDYTALLHCPRFQNDRIY 132

[Close]

BLAST of MELO3C034570.2.1 vs. TrEMBL
Match: tr|A0A061GQY1|A0A061GQY1_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_038971 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.2e-12
Identity = 40/107 (37.38%), Postives = 56/107 (52.34%), Query Frame = 0


Query: 46  LPKTCQLGFINNNLEELKSLWENLMLEHRVEFTKAYGSIGDILYTTISTSTLQALSYFWD 105
           LP+   L    N+  E+  +WE     HR  F   YG I  +LY  I    L+A+  FWD
Sbjct: 41  LPERVHLDLQQNDFTEMVGIWEQWRRAHRDNFQNKYGHIAWLLYVPIDDQMLRAIVQFWD 100

Query: 106 PMLKCFTFNTFDLTPTIEEYQALISLPVDRRNKPYIYDRKLTLQRSL 153
           P  +CF FN  D+TPTIEEY +L+ +   + +K Y   +K   +R L
Sbjct: 101 PSYRCFVFNKVDMTPTIEEYSSLLRIDHMQPDKIYWRAQKTGHRRKL 147

The following BLAST results are available for this feature:

BLAST of MELO3C034570.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65325.1	6.9e-31	54.70	hypothetical protein Csa_1G328370 [Cucumis sativus]	[more]
XP_022147190.1	9.3e-20	39.39	uncharacterized protein LOC111016201 [Momordica charantia]	[more]
XP_012477828.1	1.7e-13	35.11	PREDICTED: uncharacterized protein LOC105793466 [Gossypium raimondii]	[more]
XP_012442150.1	2.2e-13	35.94	PREDICTED: uncharacterized protein LOC105767182 [Gossypium raimondii]	[more]
XP_012435287.1	2.9e-13	35.11	PREDICTED: uncharacterized protein LOC105761890 [Gossypium raimondii]	[more]

BLAST of MELO3C034570.2.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C034570.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C034570.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LTS2\|A0A0A0LTS2_CUCSA	4.5e-31	54.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G328370 PE=4 SV=1	[more]
tr\|A0A061G4J9\|A0A061G4J9_THECC	9.5e-13	37.38	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_016087 PE=4 SV=1	[more]
tr\|A0A061FZF9\|A0A061FZF9_THECC	2.1e-12	37.04	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_014964 PE=4 SV=1	[more]
tr\|A0A0B0P440\|A0A0B0P440_GOSAR	2.8e-12	33.61	Nucleoside-triphosphatase THEP1 OS=Gossypium arboreum OX=29729 GN=F383_01096 PE=...	[more]
tr\|A0A061GQY1\|A0A061GQY1_THECC	6.2e-12	37.38	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_038971 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C034570.2	MELO3C034570.2	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C034570.2.1.CDS.1	MELO3C034570.2.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C034570.2.1.exon.1	MELO3C034570.2.1.exon.1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C034570.2.1.three_prime_UTR.1	MELO3C034570.2.1.three_prime_UTR.1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C034570.2.1	MELO3C034570.2.1-protein	polypeptide