MELO3C034570.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C034570.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Transmembrane protein, putative
Location	chr11 : 1622719 .. 1623699 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGATACTTACGCGTTTGAGGCTGTTGTCCAATTGATTCCTAATGAAGACTTGTGGGAGAATGTATCTCAGTGGTCGGAACATTTTCAACTAGAGTCAGGAGTGAGTTGGCTAAAGAAATTAGAAGTTTCACTTCCAAAGACTTGTCAGTTGGGATTCATCAACAATAACCTGGAAGAGTTAAAAAGTTTATGGGAAAACTTAATGTTGGAGCATAGAGTAGAGTTTACAAAAGCATATGGAAGCATAGGTGACATTTTATACACTACCATTAGTACATCAACTTTGCAAGCTTTGTCATATTTCTGGGACCCTATGTTGAAGTGTTTCACGTTCAACACGTTTGACTTAACTCCTACTATAGAAGAATATCAAGCACTTATTAGCCTACCAGTTGATAGAAGGAATAAGCCTTATATCTATGATCGAAAGTTGACTCTACAACGGTCACTATAAAAGTTTATGGGTGACATTCATGCATCTGAGACAAAAAAATAGATGAAGACAAAAGAAGGTAAGAATTGTATTTCCATCAATTAGCTCATCAATCTTGTGGTGGTTGTTTATCAGGGGAAGAAAGGTTTGTCTATCATCGCATTATGTATCTATGGAACAATTATTTTTCCTAGAATTAAAGGATATGCTGAAGAAAAGGTTGTTAAGATTTTTGTTGGGATAGAACGAGGGGTAAACCCTGTTATCTCAATCATGGCAGAGACTTTCAGATCGCTAAATCATTGTCGAATCCAAGGCAAAGGAAAATTCTTTAGCTGTGCTCCTATGCTCTTCATTTGGATTTCCAGTCATCTAAGGTATCTTAATAATTTTGGATATCCTAAAATAAAATTCAGCAGTCCATGGAATAATACAAGAAACACTATTGGAGAATTCAATAGTGCACACTGGAATCCAAAGGATCCAGAATTTGGAGTTTGGATGCAGTTTTTCAGACATTTAACGATAGTAGAAGCAATTTGG

mRNA sequence

ATGGTAGATACTTACGCGTTTGAGGCTGTTGTCCAATTGATTCCTAATGAAGACTTGTGGGAGAATGTATCTCAGTGGTCGGAACATTTTCAACTAGAGTCAGGAGTGAGTTGGCTAAAGAAATTAGAAGTTTCACTTCCAAAGACTTGTCAGTTGGGATTCATCAACAATAACCTGGAAGAGTTAAAAAGTTTATGGGAAAACTTAATGTTGGAGCATAGAGTAGAGTTTACAAAAGCATATGGAAGCATAGGTGACATTTTATACACTACCATTAGTACATCAACTTTGCAAGCTTTGTCATATTTCTGGGACCCTATGTTGAAGTGTTTCACGTTCAACACGTTTGACTTAACTCCTACTATAGAAGAATATCAAGCACTTATTAGCCTACCAGTTGATAGAAGGAATAAGCCTTATATCTATGATCGAAAGTTGACTCTACAACGGTCACTATAAAAGTTTATGGGTGACATTCATGCATCTGAGACAAAAAAATAGATGAAGACAAAAGAAGGTAAGAATTGTATTTCCATCAATTAGCTCATCAATCTTGTGGTGGTTGTTTATCAGGGGAAGAAAGGTTTGTCTATCATCGCATTATGTATCTATGGAACAATTATTTTTCCTAGAATTAAAGGATATGCTGAAGAAAAGGTTGTTAAGATTTTTGTTGGGATAGAACGAGGGGTAAACCCTGTTATCTCAATCATGGCAGAGACTTTCAGATCGCTAAATCATTGTCGAATCCAAGGCAAAGGAAAATTCTTTAGCTGTGCTCCTATGCTCTTCATTTGGATTTCCAGTCATCTAAGGTATCTTAATAATTTTGGATATCCTAAAATAAAATTCAGCAGTCCATGGAATAATACAAGAAACACTATTGGAGAATTCAATAGTGCACACTGGAATCCAAAGGATCCAGAATTTGGAGTTTGGATGCAGTTTTTCAGACATTTAACGATAGTAGAAGCAATTTGG

Coding sequence (CDS)

ATGGTAGATACTTACGCGTTTGAGGCTGTTGTCCAATTGATTCCTAATGAAGACTTGTGGGAGAATGTATCTCAGTGGTCGGAACATTTTCAACTAGAGTCAGGAGTGAGTTGGCTAAAGAAATTAGAAGTTTCACTTCCAAAGACTTGTCAGTTGGGATTCATCAACAATAACCTGGAAGAGTTAAAAAGTTTATGGGAAAACTTAATGTTGGAGCATAGAGTAGAGTTTACAAAAGCATATGGAAGCATAGGTGACATTTTATACACTACCATTAGTACATCAACTTTGCAAGCTTTGTCATATTTCTGGGACCCTATGTTGAAGTGTTTCACGTTCAACACGTTTGACTTAACTCCTACTATAGAAGAATATCAAGCACTTATTAGCCTACCAGTTGATAGAAGGAATAAGCCTTATATCTATGATCGAAAGTTGACTCTACAACGGTCACTATAA

Protein sequence

MVDTYAFEAVVQLIPNEDLWENVSQWSEHFQLESGVSWLKKLEVSLPKTCQLGFINNNLEELKSLWENLMLEHRVEFTKAYGSIGDILYTTISTSTLQALSYFWDPMLKCFTFNTFDLTPTIEEYQALISLPVDRRNKPYIYDRKLTLQRSL

Homology

[Close]

BLAST of MELO3C034570.2 vs. NCBI nr
Match: KGN65325.1 (hypothetical protein Csa_1G328370 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 6.9e-31
Identity = 64/117 (54.70%), Postives = 85/117 (72.65%), Query Frame = 0


Query: 1   MVDTYAFEAVVQLIPNEDLWENVSQWSEHFQLESGVSWLKKLEVSLPKTCQLGFINNNLE 60
           M+ T++   V Q  P+ED WE ++QW E  Q E+   W K +E+SLP+TC+L  +NN++E
Sbjct: 1   MIGTHSPNLVAQNFPSEDSWEGMTQWLEKLQQETDTIWPKSIELSLPQTCRLEIVNNSME 60

Query: 61  ELKSLWENLMLEHRVEFTKAYGSIGDILYTTISTSTLQALSYFWDPMLKCFTFNTFD 118
            LKSLWE+L  EHR+EF KAY +I D+ YT+I+   LQAL  FWDP+LKCFTFNTFD
Sbjct: 61  GLKSLWESLTKEHRIEFVKAYRNITDLKYTSINAHALQALVQFWDPVLKCFTFNTFD 117

[Close]

BLAST of MELO3C034570.2 vs. NCBI nr
Match: XP_022147190.1 (uncharacterized protein LOC111016201 [Momordica charantia])

HSP 1 Score: 106.3 bits (264), Expect = 9.3e-20
Identity = 52/132 (39.39%), Postives = 78/132 (59.09%), Query Frame = 0


Query: 21  ENVSQWSEHFQLESGVSWLKKLEVSLPKTCQLGFINNNLEELKSLWENLMLEHRVEFTKA 80
           E V QWSE+ Q   G +  + + +  P    + F  N L+ LK LWE L  + + +F K 
Sbjct: 17  EIVCQWSENMQHTHGDALSQNVIMPFP---NVTFPENQLDTLKRLWEGLRPDRKTQFIKK 76

Query: 81  YGSIGDILYTTISTSTLQALSYFWDPMLKCFTFNTFDLTPTIEEYQALISLPVDRRNKPY 140
           YG I  +LY  ++ S L+AL   WDP  +CFTF++ D+TPTIEEY  L+ +P+  + + Y
Sbjct: 77  YGHIAQLLYVRVNFSVLRALVQHWDPPYRCFTFSSMDITPTIEEYHTLLQIPLQEKIEVY 136

Query: 141 IYDRKLTLQRSL 153
            YD   TL+R++
Sbjct: 137 SYDGGFTLKRAV 145

[Close]

BLAST of MELO3C034570.2 vs. NCBI nr
Match: XP_012477828.1 (PREDICTED: uncharacterized protein LOC105793466 [Gossypium raimondii])

HSP 1 Score: 85.5 bits (210), Expect = 1.7e-13
Identity = 46/131 (35.11%), Postives = 71/131 (54.20%), Query Frame = 0


Query: 23  VSQWSEHFQLESGVSWLKKLEVSLPKTCQLGFINNNLEELKSLWENLMLEHRVEFTKAYG 82
           V  WS   Q   G S  +     LP+   L    N+L++L  +W+    + R  FT+ YG
Sbjct: 15  VRDWSSRTQKVKGDSLKEGYTSDLPERVTLNVRQNDLKDLTMIWKQWDSDTRGIFTEKYG 74

Query: 83  SIGDILYTTISTSTLQALSYFWDPMLKCFTFNTFDLTPTIEEYQALISLPVDRRNKPYIY 142
            I  ++   ++   +QA+  FWDP  +CFTFN  D+TPTIEEY AL+ +   + NK Y+ 
Sbjct: 75  DIAHLIAIDVNEQLIQAMVRFWDPAYQCFTFNQEDMTPTIEEYVALLRIDNVQFNKIYVK 134

Query: 143 DRK-LTLQRSL 153
           + K +T ++ L
Sbjct: 135 EPKPMTFKKKL 145

[Close]

BLAST of MELO3C034570.2 vs. NCBI nr
Match: XP_012442150.1 (PREDICTED: uncharacterized protein LOC105767182 [Gossypium raimondii])

HSP 1 Score: 85.1 bits (209), Expect = 2.2e-13
Identity = 46/128 (35.94%), Postives = 69/128 (53.91%), Query Frame = 0


Query: 26  WSEHFQLESGVSWLKKLEVSLPKTCQLGFINNNLEELKSLWENLMLEHRVEFTKAYGSIG 85
           WS   Q   G S  +     LP+   L    N+LE+L  +W+    + R  FT+ YG I 
Sbjct: 6   WSLRTQKVKGDSLKEGYTSDLPERVTLSARQNDLEDLTRIWKQWDSDTRSIFTEKYGDIA 65

Query: 86  DILYTTISTSTLQALSYFWDPMLKCFTFNTFDLTPTIEEYQALISLPVDRRNKPYIYDRK 145
            ++   ++   +QA+  FWDP   CFTFN  D+TPTIEEY AL+ +   + NK Y+ + K
Sbjct: 66  HLIAIDVNEQLIQAMVQFWDPAYHCFTFNQEDMTPTIEEYAALLRIDNVQLNKIYVKEPK 125

Query: 146 -LTLQRSL 153
            +T ++ L
Sbjct: 126 PMTFKKKL 133

[Close]

BLAST of MELO3C034570.2 vs. NCBI nr
Match: XP_012435287.1 (PREDICTED: uncharacterized protein LOC105761890 [Gossypium raimondii])

HSP 1 Score: 84.7 bits (208), Expect = 2.9e-13
Identity = 46/131 (35.11%), Postives = 70/131 (53.44%), Query Frame = 0


Query: 23  VSQWSEHFQLESGVSWLKKLEVSLPKTCQLGFINNNLEELKSLWENLMLEHRVEFTKAYG 82
           V  WS   Q   G S  +     LP+        N+LE+L  +W+    + R  FT+ YG
Sbjct: 15  VRDWSLRTQKAKGDSLKEGYTSDLPERVTSNVRQNDLEDLTRIWKQWDSDTRGIFTEKYG 74

Query: 83  SIGDILYTTISTSTLQALSYFWDPMLKCFTFNTFDLTPTIEEYQALISLPVDRRNKPYIY 142
            I  ++   ++   +QA+  FWDP  +CFTFN  D+TPTIEEY AL+ +   + NK Y+ 
Sbjct: 75  DIAHLIAIDVNEQLIQAMVRFWDPAYQCFTFNQEDMTPTIEEYAALLRIDNVQLNKIYVK 134

Query: 143 DRK-LTLQRSL 153
           + K +T ++ L
Sbjct: 135 EPKPMTFKKKL 145

[Close]

BLAST of MELO3C034570.2 vs. TrEMBL
Match: tr|A0A0A0LTS2|A0A0A0LTS2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G328370 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.5e-31
Identity = 64/117 (54.70%), Postives = 85/117 (72.65%), Query Frame = 0


Query: 1   MVDTYAFEAVVQLIPNEDLWENVSQWSEHFQLESGVSWLKKLEVSLPKTCQLGFINNNLE 60
           M+ T++   V Q  P+ED WE ++QW E  Q E+   W K +E+SLP+TC+L  +NN++E
Sbjct: 1   MIGTHSPNLVAQNFPSEDSWEGMTQWLEKLQQETDTIWPKSIELSLPQTCRLEIVNNSME 60

Query: 61  ELKSLWENLMLEHRVEFTKAYGSIGDILYTTISTSTLQALSYFWDPMLKCFTFNTFD 118
            LKSLWE+L  EHR+EF KAY +I D+ YT+I+   LQAL  FWDP+LKCFTFNTFD
Sbjct: 61  GLKSLWESLTKEHRIEFVKAYRNITDLKYTSINAHALQALVQFWDPVLKCFTFNTFD 117

[Close]

BLAST of MELO3C034570.2 vs. TrEMBL
Match: tr|A0A061G4J9|A0A061G4J9_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_016087 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 9.5e-13
Identity = 40/107 (37.38%), Postives = 57/107 (53.27%), Query Frame = 0


Query: 46  LPKTCQLGFINNNLEELKSLWENLMLEHRVEFTKAYGSIGDILYTTISTSTLQALSYFWD 105
           LP+   L    N+  E+  +WE   L HR  F   YG I  +LY  +    L+A+  FWD
Sbjct: 41  LPERVHLDLQQNDFTEMVGIWEQWRLAHRDNFQNKYGHIAWLLYVPVDDQMLRAIVQFWD 100

Query: 106 PMLKCFTFNTFDLTPTIEEYQALISLPVDRRNKPYIYDRKLTLQRSL 153
           P  +CF FN  D+TPTIEEY +L+ +   + +K Y   +K   +R L
Sbjct: 101 PSYRCFVFNKVDMTPTIEEYSSLLRIDHMQPDKIYWRAQKTVHRRKL 147

[Close]

BLAST of MELO3C034570.2 vs. TrEMBL
Match: tr|A0A061FZF9|A0A061FZF9_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_014964 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.1e-12
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 0


Query: 45  SLPKTCQLGFINNNLEELKSLWENLMLEHRVEFTKAYGSIGDILYTTISTSTLQALSYFW 104
           +LP+   L    N+L E+  +WE     HR  F   YG I  +LY  +    L+A+  FW
Sbjct: 40  NLPERVHLDLQQNDLTEMVGIWEQWRRAHRDNFQNKYGHIAWLLYVPVDDQMLRAIVQFW 99

Query: 105 DPMLKCFTFNTFDLTPTIEEYQALISLPVDRRNKPYIYDRKLTLQRSL 153
           DP  +CF FN  D+TPTIEEY +L+ +   + +K Y   +K   +R L
Sbjct: 100 DPSYRCFVFNKVDMTPTIEEYSSLLRIDHMQPDKIYWRAQKTGHRRKL 147

[Close]

BLAST of MELO3C034570.2 vs. TrEMBL
Match: tr|A0A0B0P440|A0A0B0P440_GOSAR (Nucleoside-triphosphatase THEP1 OS=Gossypium arboreum OX=29729 GN=F383_01096 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.8e-12
Identity = 40/119 (33.61%), Postives = 61/119 (51.26%), Query Frame = 0


Query: 22  NVSQWSEHFQLESGVSWLKKLEVSLPKTCQLGFINNNLEELKSLWENLMLEHRVEFTKAY 81
           NV +WSE  QLE G S        +    ++    NNL+ELK +W+    + +  F   Y
Sbjct: 14  NVHRWSEQTQLEKGDSIAMGYVSEMSDYTRISVTQNNLQELKEIWDRWGKKTKQLFYDTY 73

Query: 82  GSIGDILYTTISTSTLQALSYFWDPMLKCFTFNTFDLTPTIEEYQALISLPVDRRNKPY 141
           G +  +L   +     +AL+ FW+P   CFTF   DL PT+E+Y AL+  P  + ++ Y
Sbjct: 74  GDLPYLLDVQVEEHLFRALAQFWNPAYSCFTFGEVDLVPTVEDYTALLHCPRFQNDRIY 132

[Close]

BLAST of MELO3C034570.2 vs. TrEMBL
Match: tr|A0A061GQY1|A0A061GQY1_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_038971 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.2e-12
Identity = 40/107 (37.38%), Postives = 56/107 (52.34%), Query Frame = 0


Query: 46  LPKTCQLGFINNNLEELKSLWENLMLEHRVEFTKAYGSIGDILYTTISTSTLQALSYFWD 105
           LP+   L    N+  E+  +WE     HR  F   YG I  +LY  I    L+A+  FWD
Sbjct: 41  LPERVHLDLQQNDFTEMVGIWEQWRRAHRDNFQNKYGHIAWLLYVPIDDQMLRAIVQFWD 100

Query: 106 PMLKCFTFNTFDLTPTIEEYQALISLPVDRRNKPYIYDRKLTLQRSL 153
           P  +CF FN  D+TPTIEEY +L+ +   + +K Y   +K   +R L
Sbjct: 101 PSYRCFVFNKVDMTPTIEEYSSLLRIDHMQPDKIYWRAQKTGHRRKL 147

The following BLAST results are available for this feature:

BLAST of MELO3C034570.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65325.1	6.9e-31	54.70	hypothetical protein Csa_1G328370 [Cucumis sativus]	[more]
XP_022147190.1	9.3e-20	39.39	uncharacterized protein LOC111016201 [Momordica charantia]	[more]
XP_012477828.1	1.7e-13	35.11	PREDICTED: uncharacterized protein LOC105793466 [Gossypium raimondii]	[more]
XP_012442150.1	2.2e-13	35.94	PREDICTED: uncharacterized protein LOC105767182 [Gossypium raimondii]	[more]
XP_012435287.1	2.9e-13	35.11	PREDICTED: uncharacterized protein LOC105761890 [Gossypium raimondii]	[more]

BLAST of MELO3C034570.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C034570.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C034570.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LTS2\|A0A0A0LTS2_CUCSA	4.5e-31	54.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G328370 PE=4 SV=1	[more]
tr\|A0A061G4J9\|A0A061G4J9_THECC	9.5e-13	37.38	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_016087 PE=4 SV=1	[more]
tr\|A0A061FZF9\|A0A061FZF9_THECC	2.1e-12	37.04	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_014964 PE=4 SV=1	[more]
tr\|A0A0B0P440\|A0A0B0P440_GOSAR	2.8e-12	33.61	Nucleoside-triphosphatase THEP1 OS=Gossypium arboreum OX=29729 GN=F383_01096 PE=...	[more]
tr\|A0A061GQY1\|A0A061GQY1_THECC	6.2e-12	37.38	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_038971 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034570.2.1	MELO3C034570.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C034570.2	Cucumber (Gy14) v2	cgybmedB074
MELO3C034570.2	Cucumber (Gy14) v2	cgybmedB449
MELO3C034570.2	Cucumber (Gy14) v1	cgymedB148
MELO3C034570.2	Cucumber (Gy14) v1	cgymedB608
MELO3C034570.2	Cucurbita maxima (Rimu)	cmamedB580
MELO3C034570.2	Cucurbita maxima (Rimu)	cmamedB628
MELO3C034570.2	Cucurbita moschata (Rifu)	cmomedB568
MELO3C034570.2	Cucurbita moschata (Rifu)	cmomedB617
MELO3C034570.2	Cucurbita pepo (Zucchini)	cpemedB253
MELO3C034570.2	Cucurbita pepo (Zucchini)	cpemedB293
MELO3C034570.2	Wild cucumber (PI 183967)	cpimedB081
MELO3C034570.2	Cucurbita pepo (Zucchini)	cpemedB786
MELO3C034570.2	Wild cucumber (PI 183967)	cpimedB263
MELO3C034570.2	Wild cucumber (PI 183967)	cpimedB503
MELO3C034570.2	Cucumber (Chinese Long) v2	cumedB081
MELO3C034570.2	Cucumber (Chinese Long) v2	cumedB263
MELO3C034570.2	Cucumber (Chinese Long) v2	cumedB493
MELO3C034570.2	Melon (DHL92) v3.6.1	medmedB041
MELO3C034570.2	Bottle gourd (USVL1VR-Ls)	lsimedB047
MELO3C034570.2	Bottle gourd (USVL1VR-Ls)	lsimedB090
MELO3C034570.2	Bottle gourd (USVL1VR-Ls)	lsimedB448
MELO3C034570.2	Watermelon (Charleston Gray)	medwcgB106
MELO3C034570.2	Watermelon (Charleston Gray)	medwcgB080
MELO3C034570.2	Watermelon (97103) v1	medwmB124
MELO3C034570.2	Watermelon (97103) v1	medwmB130
MELO3C034570.2	Silver-seed gourd	carmedB0111
MELO3C034570.2	Silver-seed gourd	carmedB0314
MELO3C034570.2	Silver-seed gourd	carmedB0329
MELO3C034570.2	Cucumber (Chinese Long) v3	cucmedB089
MELO3C034570.2	Cucumber (Chinese Long) v3	cucmedB518
MELO3C034570.2	Watermelon (97103) v2	medwmbB082
MELO3C034570.2	Watermelon (97103) v2	medwmbB105
MELO3C034570.2	Wax gourd	medwgoB133