MELO3C033045.2.1 (mRNA) Melon (DHL92) v3.6.1

Overview
NameMELO3C033045.2.1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionvacuolar protein sorting-associated protein 55 homolog isoform X2
Locationchr08 : 19943364 .. 19943612 (-)
Sequence length249
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGAGAGAGACTTAGAAGAAATGCCTACGGAAAGAGAAGTTGAATGTGAGTCGACATCAACTTTGTCAATAGCGTTGAAGTTGATTCTCAGATACGTTGAGAAGGTAATGGAGAAAGATTCCAGCATCATTTTCCACTACCTGCTGACATTTTTGGTATTAGTCAAAAGAGTTATGTGCTTCGAGAGGATATCATTGACCTTTGTAACATGAACGAAGTCAAAATGTTTACATTGGTGTCCTATATGAT

mRNA sequence

AGGAGAGAGACTTAGAAGAAATGCCTACGGAAAGAGAAGTTGAATGTGAGTCGACATCAACTTTGTCAATAGCGTTGAAGTTGATTCTCAGATACGTTGAGAAGGTAATGGAGAAAGATTCCAGCATCATTTTCCACTACCTGCTGaCATTTTTGGTATTAGTCAAAAGAGTTATGTGCTTCGAGAGGATATCATTGACCTTTGTAACATGAACGAAGTCAAAATGTTTACATTGGTGTCCTATATGAT

Coding sequence (CDS)

ATGCCTACGGAAAGAGAAGTTGAATGTGAGTCGACATCAACTTTGTCAATAGCGTTGAAGTTGATTCTCAGATACGTTGAGAAGGTAATGGAGAAAGATTCCAGCATCATTTTCCACTACCTGCTGACATTTTTGGTATTAGTCAAAAGAGTTATGTGCTTCGAGAGGATATCATTGACCTTTGTAACATGA

Protein sequence

MPTEREVECESTSTLSIALKLILRYVEKVMEKDSSIIFHYLLTFLVLVKRVMCFERISLTFVT
Homology
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BLAST of MELO3C033045.2.1 vs. NCBI nr
Match: XP_011657210.1 (PREDICTED: uncharacterized protein LOC105435826 [Cucumis sativus])

HSP 1 Score: 52.0 bits (123), Expect = 8.6e-04
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 1  MPTEREVECESTSTLSIALKLILRYVEKVMEKDSSI 37
          M  E+EV CESTS L + +KLILRY EK+MEKDSSI
Sbjct: 1  MTKEKEVVCESTSVLPMGMKLILRYAEKIMEKDSSI 36

The following BLAST results are available for this feature:
BLAST of MELO3C033045.2.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011657210.18.6e-0469.44PREDICTED: uncharacterized protein LOC105435826 [Cucumis sativus][more]
BLAST of MELO3C033045.2.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C033045.2.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C033045.2.1 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C033045.2MELO3C033045.2gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C033045.2.1.five_prime_UTR.1MELO3C033045.2.1.five_prime_UTR.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C033045.2.1.CDS.1MELO3C033045.2.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C033045.2.1.exon.1MELO3C033045.2.1.exon.1exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C033045.2.1.three_prime_UTR.1MELO3C033045.2.1.three_prime_UTR.1three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C033045.2.1MELO3C033045.2.1-proteinpolypeptide