MELO3C033045.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C033045.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionvacuolar protein sorting-associated protein 55 homolog isoform X2
Locationchr08 : 19943364 .. 19943612 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGAGAGAGACTTAGAAGAAATGCCTACGGAAAGAGAAGTTGAATGTGAGTCGACATCAACTTTGTCAATAGCGTTGAAGTTGATTCTCAGATACGTTGAGAAGGTAATGGAGAAAGATTCCAGCATCATTTTCCACTACCTGCTGACATTTTTGGTATTAGTCAAAAGAGTTATGTGCTTCGAGAGGATATCATTGACCTTTGTAACATGAACGAAGTCAAAATGTTTACATTGGTGTCCTATATGAT

mRNA sequence

AGGAGAGAGACTTAGAAGAAATGCCTACGGAAAGAGAAGTTGAATGTGAGTCGACATCAACTTTGTCAATAGCGTTGAAGTTGATTCTCAGATACGTTGAGAAGGTAATGGAGAAAGATTCCAGCATCATTTTCCACTACCTGCTGaCATTTTTGGTATTAGTCAAAAGAGTTATGTGCTTCGAGAGGATATCATTGACCTTTGTAACATGAACGAAGTCAAAATGTTTACATTGGTGTCCTATATGAT

Coding sequence (CDS)

ATGCCTACGGAAAGAGAAGTTGAATGTGAGTCGACATCAACTTTGTCAATAGCGTTGAAGTTGATTCTCAGATACGTTGAGAAGGTAATGGAGAAAGATTCCAGCATCATTTTCCACTACCTGCTGACATTTTTGGTATTAGTCAAAAGAGTTATGTGCTTCGAGAGGATATCATTGACCTTTGTAACATGA

Protein sequence

MPTEREVECESTSTLSIALKLILRYVEKVMEKDSSIIFHYLLTFLVLVKRVMCFERISLTFVT
Homology
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BLAST of MELO3C033045.2 vs. NCBI nr
Match: XP_011657210.1 (PREDICTED: uncharacterized protein LOC105435826 [Cucumis sativus])

HSP 1 Score: 52.0 bits (123), Expect = 8.6e-04
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 1  MPTEREVECESTSTLSIALKLILRYVEKVMEKDSSI 37
          M  E+EV CESTS L + +KLILRY EK+MEKDSSI
Sbjct: 1  MTKEKEVVCESTSVLPMGMKLILRYAEKIMEKDSSI 36

The following BLAST results are available for this feature:
BLAST of MELO3C033045.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011657210.18.6e-0469.44PREDICTED: uncharacterized protein LOC105435826 [Cucumis sativus][more]
BLAST of MELO3C033045.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C033045.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C033045.2 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033045.2.1MELO3C033045.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C033045.2Cucumber (Gy14) v1cgymedB578
MELO3C033045.2Cucurbita maxima (Rimu)cmamedB709
MELO3C033045.2Cucurbita moschata (Rifu)cmomedB702
MELO3C033045.2Cucurbita pepo (Zucchini)cpemedB087
MELO3C033045.2Wild cucumber (PI 183967)cpimedB319
MELO3C033045.2Cucumber (Chinese Long) v2cumedB317
MELO3C033045.2Bottle gourd (USVL1VR-Ls)lsimedB169
MELO3C033045.2Watermelon (Charleston Gray)medwcgB525
MELO3C033045.2Watermelon (97103) v1medwmB569
MELO3C033045.2Cucumber (Chinese Long) v3cucmedB327
MELO3C033045.2Watermelon (97103) v2medwmbB529
MELO3C033045.2Wax gourdmedwgoB653