MELO3C032525.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C032525.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	paramyosin-like
Location	chr07 : 18066622 .. 18066770 (-)
Sequence length	149

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAAAGAGATTGAGAGCAAGAACAAAGAATATGAGTTGCTCCAAAGTAAATGCGAGTTTCTGAGGCTCGACAATCTTACTCATGAATCCATGGTCGACCAAAGGATTTGGGAAGTGGAAGGAAATAATTGAGGAGTCAAAGAAGA

mRNA sequence

ATGAGGAAAGAGATTGAGAGCAAGAACAAAGAATATGAGTTGCTCCAAAGTAAATGCGAGTTTCTGAGGCTCGACAATCTTACTCATGAATCCATGGTCGACCAAAGGATTTGGGAAGTGGAAGGAAATAATTGAGGAGTCAAAGAAGA

Coding sequence (CDS)

ATGAGGAAAGAGATTGAGAGCAAGAACAAAGAATATGAGTTGCTCCAAAGTAAATGCGAGTTTCTGAGGCTCGACAATCTTACTCATGAATCCATGGTCGACCAAAGGATTTGGGAAGTGGAAGGAAATAATTGA

Protein sequence

MRKEIESKNKEYELLQSKCEFLRLDNLTHESMVDQRIWEVEGNN

Homology

[Close]

BLAST of MELO3C032525.2.1 vs. NCBI nr
Match: KGN53387.1 (hypothetical protein Csa_4G051390 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 5.3e-08
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1  MRKEIESKNKEYELLQSKCEFLRLDNLTHESMVDQRIWEVE 42
          MRKEIESKNKEYELLQSK EFLRLDNLTH+SMV+Q   EV+
Sbjct: 52 MRKEIESKNKEYELLQSKYEFLRLDNLTHKSMVEQDKVEVD 92

[Close]

BLAST of MELO3C032525.2.1 vs. NCBI nr
Match: XP_011653209.1 (PREDICTED: TSA1-like protein [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 5.3e-08
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1  MRKEIESKNKEYELLQSKCEFLRLDNLTHESMVDQRIWEVE 42
          MRKEIESKNKEYELLQSK EFLRLDNLTH+SMV+Q   EV+
Sbjct: 58 MRKEIESKNKEYELLQSKYEFLRLDNLTHKSMVEQDKVEVD 98

[Close]

BLAST of MELO3C032525.2.1 vs. NCBI nr
Match: XP_022942684.1 (uncharacterized protein LOC111447644 isoform X1 [Cucurbita moschata])

HSP 1 Score: 59.7 bits (143), Expect = 2.9e-06
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1  MRKEIESKNKEYELLQSKCEFLRLDNLTHESMVDQ 36
          MRKEIE+KNKEYELLQSK EFLRLD LTHESM++Q
Sbjct: 55 MRKEIENKNKEYELLQSKYEFLRLDILTHESMLEQ 89

[Close]

BLAST of MELO3C032525.2.1 vs. NCBI nr
Match: XP_022942686.1 (uncharacterized protein LOC111447644 isoform X3 [Cucurbita moschata])

HSP 1 Score: 59.7 bits (143), Expect = 2.9e-06
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1  MRKEIESKNKEYELLQSKCEFLRLDNLTHESMVDQ 36
          MRKEIE+KNKEYELLQSK EFLRLD LTHESM++Q
Sbjct: 55 MRKEIENKNKEYELLQSKYEFLRLDILTHESMLEQ 89

[Close]

BLAST of MELO3C032525.2.1 vs. NCBI nr
Match: XP_022942685.1 (uncharacterized protein LOC111447644 isoform X2 [Cucurbita moschata])

HSP 1 Score: 59.7 bits (143), Expect = 2.9e-06
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1  MRKEIESKNKEYELLQSKCEFLRLDNLTHESMVDQ 36
          MRKEIE+KNKEYELLQSK EFLRLD LTHESM++Q
Sbjct: 55 MRKEIENKNKEYELLQSKYEFLRLDILTHESMLEQ 89

[Close]

BLAST of MELO3C032525.2.1 vs. TrEMBL
Match: tr|A0A0A0KYB9|A0A0A0KYB9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G051390 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.5e-08
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1  MRKEIESKNKEYELLQSKCEFLRLDNLTHESMVDQRIWEVE 42
          MRKEIESKNKEYELLQSK EFLRLDNLTH+SMV+Q   EV+
Sbjct: 52 MRKEIESKNKEYELLQSKYEFLRLDNLTHKSMVEQDKVEVD 92

[Close]

BLAST of MELO3C032525.2.1 vs. TrEMBL
Match: tr|A0A1S3BTW3|A0A1S3BTW3_CUCME (uncharacterized protein LOC103493114 OS=Cucumis melo OX=3656 GN=LOC103493114 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.8e-04
Identity = 28/41 (68.29%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 1  MRKEIESKNKEYELLQSKCEFLRLDNLTHESMVDQRIWEVE 42
          MRKEIES   EYELLQSK EF+RL N+TH+SMV Q   EV+
Sbjct: 58 MRKEIESMKIEYELLQSKYEFMRLHNITHDSMVQQDKVEVD 98

The following BLAST results are available for this feature:

BLAST of MELO3C032525.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53387.1	5.3e-08	82.93	hypothetical protein Csa_4G051390 [Cucumis sativus]	[more]
XP_011653209.1	5.3e-08	82.93	PREDICTED: TSA1-like protein [Cucumis sativus]	[more]
XP_022942684.1	2.9e-06	85.71	uncharacterized protein LOC111447644 isoform X1 [Cucurbita moschata]	[more]
XP_022942686.1	2.9e-06	85.71	uncharacterized protein LOC111447644 isoform X3 [Cucurbita moschata]	[more]
XP_022942685.1	2.9e-06	85.71	uncharacterized protein LOC111447644 isoform X2 [Cucurbita moschata]	[more]

BLAST of MELO3C032525.2.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C032525.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C032525.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KYB9\|A0A0A0KYB9_CUCSA	3.5e-08	82.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G051390 PE=4 SV=1	[more]
tr\|A0A1S3BTW3\|A0A1S3BTW3_CUCME	1.8e-04	68.29	uncharacterized protein LOC103493114 OS=Cucumis melo OX=3656 GN=LOC103493114 PE=...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C032525.2	MELO3C032525.2	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C032525.2.1.CDS.1	MELO3C032525.2.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C032525.2.1.three_prime_UTR.1	MELO3C032525.2.1.three_prime_UTR.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C032525.2.1.exon.1	MELO3C032525.2.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C032525.2.1	MELO3C032525.2.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 5..25