MELO3C032525.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C032525.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	paramyosin-like
Location	chr07 : 18066622 .. 18066770 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAAAGAGATTGAGAGCAAGAACAAAGAATATGAGTTGCTCCAAAGTAAATGCGAGTTTCTGAGGCTCGACAATCTTACTCATGAATCCATGGTCGACCAAAGGATTTGGGAAGTGGAAGGAAATAATTGAGGAGTCAAAGAAGA

mRNA sequence

ATGAGGAAAGAGATTGAGAGCAAGAACAAAGAATATGAGTTGCTCCAAAGTAAATGCGAGTTTCTGAGGCTCGACAATCTTACTCATGAATCCATGGTCGACCAAAGGATTTGGGAAGTGGAAGGAAATAATTGAGGAGTCAAAGAAGA

Coding sequence (CDS)

ATGAGGAAAGAGATTGAGAGCAAGAACAAAGAATATGAGTTGCTCCAAAGTAAATGCGAGTTTCTGAGGCTCGACAATCTTACTCATGAATCCATGGTCGACCAAAGGATTTGGGAAGTGGAAGGAAATAATTGA

Protein sequence

MRKEIESKNKEYELLQSKCEFLRLDNLTHESMVDQRIWEVEGNN

Homology

[Close]

BLAST of MELO3C032525.2 vs. NCBI nr
Match: KGN53387.1 (hypothetical protein Csa_4G051390 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 5.3e-08
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1  MRKEIESKNKEYELLQSKCEFLRLDNLTHESMVDQRIWEVE 42
          MRKEIESKNKEYELLQSK EFLRLDNLTH+SMV+Q   EV+
Sbjct: 52 MRKEIESKNKEYELLQSKYEFLRLDNLTHKSMVEQDKVEVD 92

[Close]

BLAST of MELO3C032525.2 vs. NCBI nr
Match: XP_011653209.1 (PREDICTED: TSA1-like protein [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 5.3e-08
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1  MRKEIESKNKEYELLQSKCEFLRLDNLTHESMVDQRIWEVE 42
          MRKEIESKNKEYELLQSK EFLRLDNLTH+SMV+Q   EV+
Sbjct: 58 MRKEIESKNKEYELLQSKYEFLRLDNLTHKSMVEQDKVEVD 98

[Close]

BLAST of MELO3C032525.2 vs. NCBI nr
Match: XP_022942684.1 (uncharacterized protein LOC111447644 isoform X1 [Cucurbita moschata])

HSP 1 Score: 59.7 bits (143), Expect = 2.9e-06
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1  MRKEIESKNKEYELLQSKCEFLRLDNLTHESMVDQ 36
          MRKEIE+KNKEYELLQSK EFLRLD LTHESM++Q
Sbjct: 55 MRKEIENKNKEYELLQSKYEFLRLDILTHESMLEQ 89

[Close]

BLAST of MELO3C032525.2 vs. NCBI nr
Match: XP_022942686.1 (uncharacterized protein LOC111447644 isoform X3 [Cucurbita moschata])

HSP 1 Score: 59.7 bits (143), Expect = 2.9e-06
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1  MRKEIESKNKEYELLQSKCEFLRLDNLTHESMVDQ 36
          MRKEIE+KNKEYELLQSK EFLRLD LTHESM++Q
Sbjct: 55 MRKEIENKNKEYELLQSKYEFLRLDILTHESMLEQ 89

[Close]

BLAST of MELO3C032525.2 vs. NCBI nr
Match: XP_022942685.1 (uncharacterized protein LOC111447644 isoform X2 [Cucurbita moschata])

HSP 1 Score: 59.7 bits (143), Expect = 2.9e-06
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1  MRKEIESKNKEYELLQSKCEFLRLDNLTHESMVDQ 36
          MRKEIE+KNKEYELLQSK EFLRLD LTHESM++Q
Sbjct: 55 MRKEIENKNKEYELLQSKYEFLRLDILTHESMLEQ 89

[Close]

BLAST of MELO3C032525.2 vs. TrEMBL
Match: tr|A0A0A0KYB9|A0A0A0KYB9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G051390 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.5e-08
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1  MRKEIESKNKEYELLQSKCEFLRLDNLTHESMVDQRIWEVE 42
          MRKEIESKNKEYELLQSK EFLRLDNLTH+SMV+Q   EV+
Sbjct: 52 MRKEIESKNKEYELLQSKYEFLRLDNLTHKSMVEQDKVEVD 92

[Close]

BLAST of MELO3C032525.2 vs. TrEMBL
Match: tr|A0A1S3BTW3|A0A1S3BTW3_CUCME (uncharacterized protein LOC103493114 OS=Cucumis melo OX=3656 GN=LOC103493114 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.8e-04
Identity = 28/41 (68.29%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 1  MRKEIESKNKEYELLQSKCEFLRLDNLTHESMVDQRIWEVE 42
          MRKEIES   EYELLQSK EF+RL N+TH+SMV Q   EV+
Sbjct: 58 MRKEIESMKIEYELLQSKYEFMRLHNITHDSMVQQDKVEVD 98

The following BLAST results are available for this feature:

BLAST of MELO3C032525.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53387.1	5.3e-08	82.93	hypothetical protein Csa_4G051390 [Cucumis sativus]	[more]
XP_011653209.1	5.3e-08	82.93	PREDICTED: TSA1-like protein [Cucumis sativus]	[more]
XP_022942684.1	2.9e-06	85.71	uncharacterized protein LOC111447644 isoform X1 [Cucurbita moschata]	[more]
XP_022942686.1	2.9e-06	85.71	uncharacterized protein LOC111447644 isoform X3 [Cucurbita moschata]	[more]
XP_022942685.1	2.9e-06	85.71	uncharacterized protein LOC111447644 isoform X2 [Cucurbita moschata]	[more]

BLAST of MELO3C032525.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C032525.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C032525.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KYB9\|A0A0A0KYB9_CUCSA	3.5e-08	82.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G051390 PE=4 SV=1	[more]
tr\|A0A1S3BTW3\|A0A1S3BTW3_CUCME	1.8e-04	68.29	uncharacterized protein LOC103493114 OS=Cucumis melo OX=3656 GN=LOC103493114 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032525.2.1	MELO3C032525.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 5..25

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C032525.2	Cucurbita maxima (Rimu)	cmamedB359
MELO3C032525.2	Cucurbita maxima (Rimu)	cmamedB795
MELO3C032525.2	Cucurbita moschata (Rifu)	cmomedB338
MELO3C032525.2	Cucurbita moschata (Rifu)	cmomedB790
MELO3C032525.2	Cucurbita pepo (Zucchini)	cpemedB241
MELO3C032525.2	Cucurbita pepo (Zucchini)	cpemedB501
MELO3C032525.2	Bottle gourd (USVL1VR-Ls)	lsimedB284
MELO3C032525.2	Watermelon (Charleston Gray)	medwcgB448
MELO3C032525.2	Silver-seed gourd	carmedB0389
MELO3C032525.2	Watermelon (97103) v2	medwmbB458
MELO3C032525.2	Wax gourd	medwgoB570