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The following sequences are available for this feature:
Gene sequence (with intron) Legend: five_prime_UTRexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. GGAAAGCAGAGAAAATGAATCTGCTAATTCACAGGTTACAGATTCGGTCAAGAGGAAGAAACTGAGAATCTCGTAGCTGCTCATGCTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGGCTTTCAACTGAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCATACCTGGGCTGAGATTCTTAACCGTGCTAATCTTGGTATGGAAGTTATGCATaaacgtaatgctcacaacttccctctagacctagcttgaagttccatctatcaatggataa mRNA sequence GGAAAGCAGAGAAAATGAATCTGCTAATTCACAGGTTACAGATTCGGTCAAGAGGAAGAAACTGAGAATCTCGTAGCTGCTCATGCTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGGCTTTCAACTGAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCATACCTGGGCTGAGATTCTTAACCGTGCTAATCTTGGTATGGAAGTTATGCATaaacgtaatgctcacaacttccctctagacctagcttgaagttccatctatcaatggataa Coding sequence (CDS) ATGGAAGTTATGCATaaacgtaatgctcacaacttccctctagacctagcttga Protein sequence
BLAST of MELO3C032367.2.1 vs. TAIR10
Match: ATCG00020.1 (photosystem II reaction center protein A) HSP 1 Score: 39.3 bits (90), Expect = 2.8e-04 Identity = 16/17 (94.12%), Postives = 17/17 (100.00%), Query Frame = 0
Query: 1 MEVMHKRNAHNFPLDLA 18
MEVMH+RNAHNFPLDLA
Sbjct: 328 MEVMHERNAHNFPLDLA 344
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| ATCG00020.1 | 2.8e-04 | 94.12 | photosystem II reaction center protein A | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
GO Assignments
This mRNA is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| biological_process |
GO:0015979 |
photosynthesis |
| biological_process |
GO:0019684 |
photosynthesis, light reaction |
| biological_process |
GO:0009772 |
photosynthetic electron transport in photosystem II |
| biological_process |
GO:0018298 |
protein-chromophore linkage |
| biological_process |
GO:0009635 |
response to herbicide |
| cellular_component |
GO:0009579 |
thylakoid |
| cellular_component |
GO:0009536 |
plastid |
| cellular_component |
GO:0009523 |
photosystem II |
| cellular_component |
GO:0016020 |
membrane |
| cellular_component |
GO:0016021 |
integral component of membrane |
| cellular_component |
GO:0009535 |
chloroplast thylakoid membrane |
| cellular_component |
GO:0009507 |
chloroplast |
| molecular_function |
GO:0016168 |
chlorophyll binding |
| molecular_function |
GO:0009055 |
electron carrier activity |
| molecular_function |
GO:0045156 |
electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity |
| molecular_function |
GO:0005506 |
iron ion binding |
| molecular_function |
GO:0046872 |
metal ion binding |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
| molecular_function |
GO:0016682 |
oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor |
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| MELO3C032367.2.1.five_prime_UTR.1 | MELO3C032367.2.1.five_prime_UTR.1 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| MELO3C032367.2.1.exon.1 | MELO3C032367.2.1.exon.1 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| MELO3C032367.2.1.CDS.1 | MELO3C032367.2.1.CDS.1 | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| MELO3C032367.2.1.three_prime_UTR.1 | MELO3C032367.2.1.three_prime_UTR.1 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| MELO3C032367.2.1 | MELO3C032367.2.1-protein | polypeptide |
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