MELO3C032367.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C032367.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionPhotosystem II protein D1
Locationchr07 : 5524598 .. 5524982 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAAGCAGAGAAAATGAATCTGCTAATTCACAGGTTACAGATTCGGTCAAGAGGAAGAAACTGAGAATCTCGTAGCTGCTCATGCTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGGCTTTCAACTGAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCATACCTGGGCTGAGATTCTTAACCGTGCTAATCTTGGTATGGAAGTTATGCATaaacgtaatgctcacaacttccctctagacctagcttgaagttccatctatcaatggataa

mRNA sequence

GGAAAGCAGAGAAAATGAATCTGCTAATTCACAGGTTACAGATTCGGTCAAGAGGAAGAAACTGAGAATCTCGTAGCTGCTCATGCTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGGCTTTCAACTGAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCATACCTGGGCTGAGATTCTTAACCGTGCTAATCTTGGTATGGAAGTTATGCATaaacgtaatgctcacaacttccctctagacctagcttgaagttccatctatcaatggataa

Coding sequence (CDS)

ATGGAAGTTATGCATaaacgtaatgctcacaacttccctctagacctagcttga

Protein sequence

MEVMHKRNAHNFPLDLA
Homology
[Close]
BLAST of MELO3C032367.2 vs. TAIR10
Match: ATCG00020.1 (photosystem II reaction center protein A)

HSP 1 Score: 39.3 bits (90), Expect = 2.8e-04
Identity = 16/17 (94.12%), Postives = 17/17 (100.00%), Query Frame = 0 

Query: 1   MEVMHKRNAHNFPLDLA 18
           MEVMH+RNAHNFPLDLA
Sbjct: 328 MEVMHERNAHNFPLDLA 344

The following BLAST results are available for this feature:
BLAST of MELO3C032367.2 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C032367.2 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00020.12.8e-0494.12photosystem II reaction center protein A[more]
BLAST of MELO3C032367.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C032367.2 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0015979 photosynthesis
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0009635 response to herbicide
cellular_component GO:0009579 thylakoid
cellular_component GO:0009536 plastid
cellular_component GO:0009523 photosystem II
cellular_component GO:0016020 membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009507 chloroplast
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0009055 electron carrier activity
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function GO:0005506 iron ion binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032367.2.1MELO3C032367.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C032367.2Cucumber (Gy14) v2cgybmedB273
MELO3C032367.2Cucumber (Gy14) v1cgymedB041
MELO3C032367.2Cucurbita maxima (Rimu)cmamedB035
MELO3C032367.2Cucurbita maxima (Rimu)cmamedB505
MELO3C032367.2Cucurbita moschata (Rifu)cmomedB025
MELO3C032367.2Cucurbita moschata (Rifu)cmomedB493
MELO3C032367.2Cucurbita pepo (Zucchini)cpemedB642
MELO3C032367.2Cucurbita pepo (Zucchini)cpemedB863
MELO3C032367.2Wild cucumber (PI 183967)cpimedB308
MELO3C032367.2Cucumber (Chinese Long) v2cumedB304
MELO3C032367.2Bottle gourd (USVL1VR-Ls)lsimedB343
MELO3C032367.2Watermelon (Charleston Gray)medwcgB458
MELO3C032367.2Watermelon (97103) v1medwmB532
MELO3C032367.2Silver-seed gourdcarmedB0323
MELO3C032367.2Silver-seed gourdcarmedB0641
MELO3C032367.2Cucumber (Chinese Long) v3cucmedB291
MELO3C032367.2Cucumber (Chinese Long) v3cucmedB314
MELO3C032367.2Watermelon (97103) v2medwmbB468
MELO3C032367.2Wax gourdmedwgoB602