MELO3C032094.2.1 (mRNA) Melon (DHL92) v3.6.1

Overview
NameMELO3C032094.2.1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionDxs1
Locationchr06 : 19742942 .. 19745645 (+)
Sequence length2133
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAACCAAAGCCTCCAATGGAGCCTTCCTCCACAGTAATCAGAATTTCATGTTCTTTTGCCAGTTGCCTAATAAGTTGAGTGTCAAGAGGTTTGCAAAATCTTGCATCTGCCACTGTTGGGGCAATGCCTCTTGTTTTCAGCAATTCCGAAGCTTCAACACATTGTTGAACTATTGAACCATACCCCAATATAGCAACTCTAGTGCCTTCCATCAGTATTCTCCCTTTGCCAATCTGTTTAACGGAAGTGAAGTCAACAATGTGTTATATTTTACTTTGAGATAGTTACTTTATAACCTTCTTAATGCTTAGAGTATTTGTTTATTTCATGCTAACCTCAATTGGAGTCCCTTTGAAGTTAGGAGGAACAACAACTCCTATCCCATTGCCCCTTGGAAACCGAAAACAACTTGGTCTATCGTCTATCGCTGCTGCTGTCGCAACCATGTGTATTAGTTCAGCTTCATCAGCTGGAGCCATGACAATCATGTTCGGCAAACAAGCCATGTATGTTATATCAAATGCTCCACAATGTGTCGGGCCATCAGCACCGACCAAACCAGCTCTATCCATTGCAAAGCGGACAGGTAGTTTCTGAAGGTCTACATCGTGCACCACCTTGATTACCATTCCATATAGTTAGTAATTAGGAAAACACAAAATTGTCGATGAAAAATAATCTTTTCAATTACTGGTACCTAAGATCTGTTTGGCTTACATTCCAAGTGCTTAAAAATGTAGGGTCAATATCGTTCCAAATATACATACCTGATCAAACCCTCTTTGAAGGAAGGATGAGTAAATAGCACAAAATGGCTTGATACCCTCTGTTGCTAAACCAGCTGCAAATGTAACAGCATGTTGCTCGGCGATCCCGACGTCGAAGCAACGCTGTGGGAACCTCTTCTGGAAATAGTTAAGACCAGTTCCACCACCCATGGCAGCATGGATGGCTACAATTTTGTCGTCCAGTTCAGCTTCTTTTATCAGAGATTCAGCAAAGTATTGAGTATATGAAAGTGTGGGGGATTTTGTCTTGAATTGCTTGCCTGTTTTGGGATCAAACTTGACTACTCCTGAATTATTACAAGATTTGCAAAGAATTAAGTATTTGAAAGAATCCATGGAAGTAAACAAGATGCTCAATTAGAATAGAGTCTAACCATGCATTTTATCTGCAGCTGCTTCTGCTGGAGGATAGCCCTTCCCTTTTTCTGTAAGAATGTGGATCAATACCGGTCCAGGGGCTGGCATTGATTTGACTTTATCCAAAATGGTGACCAAATCTCCCACATTGTGTCCATCCACTGGTCCAATATAATACAAGCCTAGCTCCTCGAAAAATGTCGATCCCGAACCACTTATCATGCCTCTTGCATATTCATCGACTTTGGCTGCAACTCCATGGGTTTGCTTTCCAATTTGTTTGGTGATGGTCTTAAAGGAATGGTATGAAAGTCATCAACTTTGATAAACCAAGGTTTTATTTTGAATGAATTTTTAAATTTATAATACCGCTTGCCAAGCACTTCTAAAGTCATTTCAAATAGACTCTAACTTGTTGTGCTGACATGAAATATAATATCAATGCAGTGAATGTGTAAGGCGTATGCAATTAATCCTCTAATATCTTACCTTTGCAGCTTCGCGAAGTTTTCGAAACTGTGTACTTGCTTGAAGTTTGGTTAAGGCACTGCTGAGAGCTCCAACAGGAGTAGCAGGGCCATCAAGAGTAGCAGTCGGCAATGAGACTTGCTTGTTGTCATTTAGAATAACGATCATGTTCGTATCGAGATAGCCTGCATTATTCATCGCCTCGTATGCTTGGCCTGCTGTCATAGCTCCATCCCCAATCACAGAAATGACGCTGTTCTTTTTTCCCAAAAGGTCTCTTCCAACTGCCATGCCTACATTGTTTTCATTGTGGATCGGGACAAAGATTCATTAAAAAGAAGAATAATGTGCGTCTCATTAAAATTAAACCCTCTGAAATTGAAAAAGAGTAAATGAGGAGAATATAAGACATACCAAGACCAGCTGATATGCTTGTAGAACTGTGTCCTGCACCAAATGCATCATGAATACTTTCATCCCTTTTTGGAAAGCCAGCAAGCCCTGAAGTTTGCCTTAAAGTATGCATTCTAGACCTTCTTCCAGTGAGAATTTTGTGAGGATATGCCTGTAAAAAACACCACCGAAATGAACTCTAATCCTAAAAATAAATCTCATTATTGTAATACTTTTGTTGGATATGCACCTGATGGCCAACATCCCATATGATTTTGTCGTCTGGAGTGTTGAACACATGATGCAGTGCCACGGCTAGCTCGACAACGCCTAAGCTTGCACTTAAATGACCTCCAGTTTTTGATACAGAGAACACAATTTCTGCTCTAAGCTCTGCTGCTAGCTGCTCAAGATCCTGAAAAAAAGATCTCAAATGATCATAATAAGAAAGAGCAAAAAATGGCACAATGGAAGAAAAGTTGACAATGCTCAACAACAAAAAGAGGTTTACCTGTACTGATAGGTTCTTCATATGAATAGGAAAATTCACAGTGTCCAACAATGGGGTCGCTGGTTTTTCGCCTGAGTAGTCAATCGTCAATCCATCTTTTTCTTTATCTGGCAAATTCTTCCCTTCTCCATTCGTGCTATTACTCGAAGCTCTCAAACAAAACTGTATGAAGAACAAACAATG

mRNA sequence

ATGAGAACCAAAGCCTCCAATGGAGCCTTCCTCCACAGTAATCAGAATTTCATGTTCTTTTGCCAGTTGCCTAATAAGTTGAGTGTCAAGAGAGTATTTGTTTATTTCATGCTAACCTCAATTGGAGTCCCTTTGAAGTTAGGAGGAACAACAACTCCTATCCCATTGCCCCTTGGAAACCGAAAACAACTTGGTCTATCGTCTATCGCTGCTGCTGTCGCAACCATGTGTATTAGTTCAGCTTCATCAGCTGGAGCCATGACAATCATGTTCGGCAAACAAGCCATGTATGTTATATCAAATGCTCCACAATGTGTCGGGCCATCAGCACCGACCAAACCAGCTCTATCCATTGCAAAGCGGACAGGGTCAATATCGTTCCAAATATACATACCTGATCAAACCCTCTTTGAAGGAAGGATGAGTAAATAGCACAAAATGGCTTGATACCCTCTGTTGCTAAACCAGCTGCAAATGTAACAGCATGTTGCTCGGCGATCCCGACGTCGAAGCAACGCTGTGGGAACCTCTTCTGGAAATAGTTAAGACCAGTTCCACCACCCATGGCAGCATGGATGGCTACAATTTTGTCGTCCAGTTCAGCTTCTTTTATCAGAGATTCAGCAAAGTATTGAGTATATGAAAGTGTGGGGGATTTTGTCTTGAATTGCTTGCCTGTTTTGGGATCAAACTTGACTACTCCTGAATTATTACAAGATTTGCAAAGAATTAAGTATTTGAAAGAATCCATGGAAGTAAACAAGATGCTCAATTAGAATAGAGTCTAACCATGCATTTTATCTGCAGCTGCTTCTGCTGGAGGATAGCCCTTCCCTTTTTCTGTAAGAATGTGGATCAATACCGGTCCAGGGGCTGGCATTGATTTGACTTTATCCAAAATGGTGACCAAATCTCCCACATTGTGTCCATCCACTGGTCCAATATAATACAAGCCTAGCTCCTCGAAAAATGTCGATCCCGAACCACTTATCATGCCTCTTGCATATTCATCGACTTTGGCTGCAACTCCATGGGTTTGCTTTCCAATTTGTTTGGTGATGGTCTTAAAGGAATGCTTCGCGAAGTTTTCGAAACTGTGTACTTGCTTGAAGTTTGGTTAAGGCACTGCTGAGAGCTCCAACAGGAGTAGCAGGGCCATCAAGAGTAGCAGTCGGCAATGAGACTTGCTTGTTGTCATTTAGAATAACGATCATGTTCGTATCGAGATAGCCTGCATTATTCATCGCCTCGTATGCTTGGCCTGCTGTCATAGCTCCATCCCCAATCACAGAAATGACGCTGTTCTTTTTTCCCAAAAGGTCTCTTCCAACTGCCATGCCTACATTGTTTTCATTGTGGATCGGGACAAAGATTCATTAAAAAGAAGAATAATGTGCGTCTCATTAAAATTAAACCCTCTGAAATTGAAAAAGAGTAAATGAGGAGAATATAAGACATACCAAGACCAGCTGATATGCTTGTAGAACTGTGTCCTGCACCAAATGCATCATGAATACTTTCATCCCTTTTTGGAAAGCCAGCAAGCCCTGAAGTTTGCCTTAAAGTATGCATTCTAGACCTTCTTCCAGTGAGAATTTTGTGAGGATATGCCTGTAAAAAACACCACCGAAATGAACTCTAATCCTAAAAATAAATCTCATTATTGTAATACTTTTGTTGGATATGCACCTGATGGCCAACATCCCATATGATTTTGTCGTCTGGAGTGTTGAACACATGATGCAGTGCCACGGCTAGCTCGACAACGCCTAAGCTTGCACTTAAATGACCTCCAGTTTTTGATACAGAGAACACAATTTCTGCTCTAAGCTCTGCTGCTAGCTGCTCAAGATCCTGAAAAAAAGATCTCAAATGATCATAATAAGAAAGAGCAAAAAATGGCACAATGGAAGAAAAGTTGACAATGCTCAACAACAAAAAGAGGTTTACCTGTACTGATAGGTTCTTCATATGAATAGGAAAATTCACAGTGTCCAACAATGGGGTCGCTGGTTTTTCGCCTGAGTAGTCAATCGTCAATCCATCTTTTTCTTTATCTGGCAAATTCTTCCCTTCTCCATTCGTGCTATTACTCGAAGCTCTCAAACAAAACTGTATGAAGAACAAACAATG

Coding sequence (CDS)

ATGAGAACCAAAGCCTCCAATGGAGCCTTCCTCCACAGTAATCAGAATTTCATGTTCTTTTGCCAGTTGCCTAATAAGTTGAGTGTCAAGAGAGTATTTGTTTATTTCATGCTAACCTCAATTGGAGTCCCTTTGAAGTTAGGAGGAACAACAACTCCTATCCCATTGCCCCTTGGAAACCGAAAACAACTTGGTCTATCGTCTATCGCTGCTGCTGTCGCAACCATGTGTATTAGTTCAGCTTCATCAGCTGGAGCCATGACAATCATGTTCGGCAAACAAGCCATGTATGTTATATCAAATGCTCCACAATGTGTCGGGCCATCAGCACCGACCAAACCAGCTCTATCCATTGCAAAGCGGACAGGGTCAATATCGTTCCAAATATACATACCTGATCAAACCCTCTTTGAAGGAAGGATGAGTAAATAG

Protein sequence

MRTKASNGAFLHSNQNFMFFCQLPNKLSVKRVFVYFMLTSIGVPLKLGGTTTPIPLPLGNRKQLGLSSIAAAVATMCISSASSAGAMTIMFGKQAMYVISNAPQCVGPSAPTKPALSIAKRTGSISFQIYIPDQTLFEGRMSK
Homology
[Close]
BLAST of MELO3C032094.2.1 vs. NCBI nr
Match: KMT09296.1 (hypothetical protein BVRB_6g133950 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 70.5 bits (171), Expect = 5.3e-09
Identity = 41/60 (68.33%), Postives = 43/60 (71.67%), Query Frame = 0 

Query: 37 MLTSIGVPLKLGGTTTPIPLPLGNRKQLGLSSIAAAVATMCISSASSAGAMTIMFGKQAM 96
          ML +        G  TPIP PLG  KQLGLSSIA AVATMCISSASS GAMT +FGKQAM
Sbjct: 1  MLLAYSSAFAARGRGTPIPFPLGYLKQLGLSSIATAVATMCISSASSDGAMTTIFGKQAM 60

[Close]
BLAST of MELO3C032094.2.1 vs. TrEMBL
Match: tr|A0A0A9N9X4|A0A0A9N9X4_ARUDO (Dxs1 OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.4e-10
Identity = 42/56 (75.00%), Postives = 45/56 (80.36%), Query Frame = 0 

Query: 69  IAAAVATMCISSASSAGAMTIMFGKQAMYVISNAPQCVGPSAPTKPALSIAKRTGS 125
           +AAAVATM  SSASS GAMT M G+ AMYV SNAPQ VGPSAPT PALS+A  TGS
Sbjct: 1   MAAAVATMWQSSASSDGAMTTMLGRHAMYVTSNAPQWVGPSAPTSPALSMANLTGS 56

[Close]
BLAST of MELO3C032094.2.1 vs. TrEMBL
Match: tr|A0A0A9NGY5|A0A0A9NGY5_ARUDO (Dxs1 OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.4e-10
Identity = 42/56 (75.00%), Postives = 45/56 (80.36%), Query Frame = 0 

Query: 69  IAAAVATMCISSASSAGAMTIMFGKQAMYVISNAPQCVGPSAPTKPALSIAKRTGS 125
           +AAAVATM  SSASS GAMT M G+ AMYV SNAPQ VGPSAPT PALS+A  TGS
Sbjct: 1   MAAAVATMWQSSASSDGAMTTMLGRHAMYVTSNAPQWVGPSAPTSPALSMANLTGS 56

[Close]
BLAST of MELO3C032094.2.1 vs. TrEMBL
Match: tr|A0A0A9K7D2|A0A0A9K7D2_ARUDO (Dxs1 OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.1e-06
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 87  MTIMFGKQAMYVISNAPQCVGPSAPTKPALSIAKRTGS 125
           MT M G+ AMYV SNAPQCVGPSAPT PALS+A  TGS
Sbjct: 1   MTTMLGRHAMYVTSNAPQCVGPSAPTSPALSMANLTGS 38

[Close]
BLAST of MELO3C032094.2.1 vs. TrEMBL
Match: tr|A0A0A9J338|A0A0A9J338_ARUDO (Dxs1 OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.0e-05
Identity = 28/38 (73.68%), Postives = 30/38 (78.95%), Query Frame = 0 

Query: 87  MTIMFGKQAMYVISNAPQCVGPSAPTKPALSIAKRTGS 125
           MT M G+ AMYV SNAPQ VGPSAPT PALS+A  TGS
Sbjct: 1   MTTMLGRHAMYVTSNAPQWVGPSAPTSPALSMANLTGS 38

The following BLAST results are available for this feature:
BLAST of MELO3C032094.2.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KMT09296.15.3e-0968.33hypothetical protein BVRB_6g133950 [Beta vulgaris subsp. vulgaris][more]
BLAST of MELO3C032094.2.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C032094.2.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C032094.2.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A9N9X4|A0A0A9N9X4_ARUDO2.4e-1075.00Dxs1 OS=Arundo donax OX=35708 PE=4 SV=1[more]
tr|A0A0A9NGY5|A0A0A9NGY5_ARUDO2.4e-1075.00Dxs1 OS=Arundo donax OX=35708 PE=4 SV=1[more]
tr|A0A0A9K7D2|A0A0A9K7D2_ARUDO2.1e-0676.32Dxs1 OS=Arundo donax OX=35708 PE=4 SV=1[more]
tr|A0A0A9J338|A0A0A9J338_ARUDO4.0e-0573.68Dxs1 OS=Arundo donax OX=35708 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C032094.2MELO3C032094.2gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C032094.2.1MELO3C032094.2.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C032094.2.1.CDS.1MELO3C032094.2.1.CDS.1CDS
MELO3C032094.2.1.CDS.2MELO3C032094.2.1.CDS.2CDS
MELO3C032094.2.1.CDS.3MELO3C032094.2.1.CDS.3CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C032094.2.1.exon.1MELO3C032094.2.1.exon.1exon
MELO3C032094.2.1.exon.2MELO3C032094.2.1.exon.2exon
MELO3C032094.2.1.exon.3MELO3C032094.2.1.exon.3exon
MELO3C032094.2.1.exon.4MELO3C032094.2.1.exon.4exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C032094.2.1.three_prime_UTR.1MELO3C032094.2.1.three_prime_UTR.1three_prime_UTR
MELO3C032094.2.1.three_prime_UTR.2MELO3C032094.2.1.three_prime_UTR.2three_prime_UTR