MELO3C032032.2.1 (mRNA) Melon (DHL92) v3.6.1

Overview
NameMELO3C032032.2.1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Description60S ribosomal protein L30-like
Locationchr06 : 15010796 .. 15014495 (+)
Sequence length602
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCACTTTCCTTCTTCAAAATCCCTCCCTTTCCTTCTTCACCCACACTCTCTTTTCCTTCAAAATCCCTCCCCTCACGAACGACGAACGACGCATGATGAAAACCCCAACCTTAACCCCATTCTTCTCATCTCCACGTCCTTTCTTCTTGGCGACAGAGACCCATGGTGAGGAGACCCATAGCATTGCTTGTGAGTTCTTGATCTTTATTTTTTCGTTTCTTCTTCCTCCATTTATCTCTTTCCCTGTGCACAGTCCCACAAATTACCTTGATAAATTCAAGAGGAAGTAGAGTTCTTAGAGACATATAAATAGCACTGATTTCTTGTCTTCTTTGTCTCTCCCTTTCTCTCTCTAACTCAACAACGCCTTTGTCCATTCCTTAAGGTACCATAACTCAAAAATGCATTTTAACTATTTCGTGATTCTTTAAACGTATATTGATGGTTTTGTGAAATATATTGTTGGCTATGTGATGAAGCATTTTGGTAGCTTACAATGTGTTTGATAAAATGCATCAATGAAGCCTTTGGTTGATTTTTAATTGATTTTTGTTTGTTTGAATTAGGAAATCAAGGCCAAGGGAGATTTCATGGCTATGGGAGGAAGCTTTGAGAAAAAGAGAATGAAAATGAATGGTTAGATTTTAAACTTTGATGATGTGTAGGGCCTTTATGTATTTTCTAGAGTTTAGTTGTTACGGGCATACATGTTTAGTGTTAGGTTTTATTTCTAGTAGGGCAGGAATTTCAATCCCCTTTCTTATTGAAAAGAATATTTAGTCTTAGGATGTAATTATGATTGTTTCTCAAATAATGAATTTTGGAATGAATGGTAATTATTTGGATATTTGGTTCTATATTCTGCTATGGTTTCTTACATAGCACTTTAAGGTGCTTACATGTTTTTTTAAAACATGAATGATGGTCTTCGATTCAAATTTTAGTGTGGATTCTGTTGCTTGTAAACTATATTGCACTTAGGAGCTATTTTTACGACATAGATCTTTGGGGTTTGTAGAAATGATAGACTACTGTGTGAAAATTCATATACTAATGATGAACTAAAACTGATGTAAATCTCTATTCTCTACCACATTTTGCCATTAACTTCATGGATTTATCAAGGTGATGCAGACAATTAGTTGTTAATTGCTATGGTATAATGTATTATTGGGATGGGTAAGAATAGATGAGATGAACATTGAGATAGGGGTTGAAACATCCTATAGTTTCTAAGTGTTTGCTTCTTTCCTTGGAGAATTGGTGGCCTAAGAACCCTACTAGTGGTCGTTGTCATAATCTTCTACTATGACTATTTTTTTATGCTGATTTTGAAGCATCAATGGCTGATCAAAATGCACAAAATGCTCTTACACATTTAAAGGTAGTTCATTTAGATTTAATAAAAAATATTCAAGAAACAAATTTTCATACTGATACGTGATAAGAAATGATAAATTGGCTTAATATGAGTTGACTACATTTTTTAGAGTGCTAGGAAGCTATCCAATGGACATTAATATGCCATGAGAAGTTAGAGCATCCAGAAAACTTGGTTTCTCCTTTTTCTTTGTTTTTAATTTATGGAATGGGCTTGTATCACGTAAAACTAGTCATGAGATATGTTAATTTGAATCTCCTCCACCATTCAAATTAACTTATTTATTGCCATTTTTGAGTTTTGATTATGTTATTTATATGGTTGAAGCTTGACTGCTTTGAGTTAATTGTATAAGATTTTGAAAGCTTTAATTGCTTCGAGCTGATTCTTTAAGATTTTAAACTTTGATGATGAGTAGGGTCTTCAGGTTTGGGTTTGGTGGGTAAAAAAGAGTAATTACGTAATTGTTTAGCTATGAAGAAGTTTAGGATCTTATTTAGATCTCTACTCTCTTCTTTTAAAATTCTACTAAGAGGTTTGGTTTTAAGAACATGATTAGTTTGGATATTGTTTTCTTGCTTGTTGCTGTTAGTACTAGACATTGTATGTTTGAAGTTGGTTTACATCAAAACAAGAGCTAAAGAATAATTAGTCTATGATGGAAAATGAATACATTCGAAAATTTATGGAAAAAGACAGTTCAATTTTTGTTTTGTTTCCACTGTTTTGTTGTTGCTCATTGGTGGGTATGTTGTAGAATACTTTGTTGTTCTTACTATAACCTTTGTAGAACTATTTGTCAGGTAGGTGCTTCTTGCATACCTGAGAAGCAAGGCACAAATAGACACAACATAGACAACAAAAATATTTTTATCAAGTGTCATAATATCCTGATGCTGTAGAAGGAGGTTATGGCTAAATTAAGATGTCTATGCTTAGTTTTGTACTTTCCTATTGATTTGTTACCATTGTCTTTCAACAGTTGTTTTGATCTTGGTATGCATCCTATTGAATTCAATGGGTGGGTTTATATCATTGGTTGTAATTGGTTTTCTTCTTACTCATAATATTTATGTTGGTCCATCAATTTAAATTTAACTCATTCCATTTATACATGTTTAGTTTAAATATTAGTTAGTTAATTAGCGACATGTATGGTTGATTGTTCTGCTTTACTTCTATGTATTTTTCAGCCACTGTTATTATTAGTATGTTTTATTTATTATTTTTGTTATAAGTATGTTTAGGTAATGTTGATCTTGGAACTGCTTGTGGCAAGTATTACCGTGTTTCTTGCCTTAGCATTATCATCCAGGTACTAAAAACATTGTTATTTGGTTCATTAAATTTCATATCTACGTGGTTGGATAAGTATGTTACTTGTGATTTTGAATCTAGATAGTGTTTTGCTTTCCTCAATGTAGAATCAATGCATGCATGTAAGTTGCTATCCTAGCTTGATGTAATATGGGATTAATGTGGTGTGTTCTGGGAGATGTAATCAACTAAACAAGAAAATCTGGAAACTTTTTTATCAATATCTTGGAATAAAATAATAATAGCCTAAGATTTATACTAAGATTTTTACCAGGCAAATGTGACCTATCACCTTTTAAACAAGTCAAAGAGTCTATAGTAAGGATAAATTCCAGTAGGTAATTGACAACTAATTACATCATAATGGGTTGAACTAAACTAGTTGTCTTGAATAGAAATGTGACTTACATTCTTTTATAGCCATATTATAATGTAATGTAAACATTTATAATTTGATATATGGCTATCAAATGATTTAGAATCACGGAAAGACGTAGAGGATGTAGGGAAGCACGTACATTGTGCTTAGGATAAGATATTTTAACATACATTTTGTCACATATTTTTGTGTTCGAACTGCCATAGAAAATACAGTGCTGGAGGAAAATACAGCTGCCATGTTCAATATCAATGAGGTAAGGTTATCTTAAAACTTAGTAAAATGCAGTTTTTGAAGTTCATCAAATTATATACTTGCATATGTTGTTGATTAAAATCTGCATTGATTTAGTATATGTAACTTGAATACACTTTTTGCTAAGATGATAAACTCTGTTTTACTTGCCAGGCGCTAAAAGTTGTTCTCAGCCTTCTACTTCAAATCCCAGCACTTCAGAATCCATTTTCATTCAAAGGGTTGCTTTTCTCTCTTTTCATTCAAATCGTACAGACCTTTACGATTACAATATTTGTGTATTAACTTACTCATACAATAATTTGAGTTTATATCTTTTTGTTTTTTAAGTTTTGAATATTGTTGACATCGTGTTTTTTGTCATTTG

mRNA sequence

CTCACTTTCCTTCTTCAAAATCCCTCCCTTTCCTTCTTCACCCACACTCTCTTTTCCTTCAAAATCCCTCCCCTCACGAACGACGAACGACGCATGATGAAAACCCCAACCTTAACCCCATTCTTCTCATCTCCACGTCCTTTCTTCTTGGCGACAGAGACCCATGGTGAGGAGACCCATAGCATTGCTTGAAATCAAGGCCAAGGGAGATTTCATGGCTATGGGAGGAAGCTTTGAGAAAAAGAGAATGAAAATGAATGCATCAATGGCTGATCAAAATGCACAAAATGCTCTTACACATTTAAAGAACTATTTGTCAGGTAATGTTGATCTTGGAACTGCTTGTGGCAAGTATTACCGTGTTTCTTGCCTTAGCATTATCATCCAGGCGCTAAAAGTTGTTCTCAGCCTTCTACTTCAAATCCCAGCACTTCAGAATCCATTTTCATTCAAAGGGTTGCTTTTCTCTCTTTTCATTCAAATCGTACAGACCTTTACGATTACAATATTTGTGTATTAACTTACTCATACAATAATTTGAGTTTATATCTTTTTGTTTTTTAAGTTTTGAATATTGTTGACATCGTGTTTTTTGTCATTTG

Coding sequence (CDS)

ATGGTGAGGAGACCCATAGCATTGCTTGAAATCAAGGCCAAGGGAGATTTCATGGCTATGGGAGGAAGCTTTGAGAAAAAGAGAATGAAAATGAATGCATCAATGGCTGATCAAAATGCACAAAATGCTCTTACACATTTAAAGAACTATTTGTCAGGTAATGTTGATCTTGGAACTGCTTGTGGCAAGTATTACCGTGTTTCTTGCCTTAGCATTATCATCCAGGCGCTAAAAGTTGTTCTCAGCCTTCTACTTCAAATCCCAGCACTTCAGAATCCATTTTCATTCAAAGGGTTGCTTTTCTCTCTTTTCATTCAAATCGTACAGACCTTTACGATTACAATATTTGTGTATTAA

Protein sequence

MVRRPIALLEIKAKGDFMAMGGSFEKKRMKMNASMADQNAQNALTHLKNYLSGNVDLGTACGKYYRVSCLSIIIQALKVVLSLLLQIPALQNPFSFKGLLFSLFIQIVQTFTITIFVY
Homology
[Close]
BLAST of MELO3C032032.2.1 vs. TAIR10
Match: AT1G77940.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 45.1 bits (105), Expect = 3.6e-05
Identity = 22/43 (51.16%), Postives = 28/43 (65.12%), Query Frame = 0 

Query: 31 MNASMADQNAQNALTHLKNYLSGNVDLGTACGKYYRVSCLSII 74
          +  S  +  A  A   + +Y   NVDLGTACGKY+RVSCLSI+
Sbjct: 55 LRRSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIV 97

[Close]
BLAST of MELO3C032032.2.1 vs. TAIR10
Match: AT1G36240.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 44.7 bits (104), Expect = 4.7e-05
Identity = 22/43 (51.16%), Postives = 28/43 (65.12%), Query Frame = 0 

Query: 31 MNASMADQNAQNALTHLKNYLSGNVDLGTACGKYYRVSCLSII 74
          +  S  +  A  A   + +Y   NVDLGTACGKY+RVSCLSI+
Sbjct: 55 LRRSEIEYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIV 97

[Close]
BLAST of MELO3C032032.2.1 vs. TAIR10
Match: AT3G18740.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 44.7 bits (104), Expect = 4.7e-05
Identity = 22/43 (51.16%), Postives = 27/43 (62.79%), Query Frame = 0 

Query: 31 MNASMADQNAQNALTHLKNYLSGNVDLGTACGKYYRVSCLSII 74
          +  S  +  A  A   +  Y   NVDLGTACGKY+RVSCLSI+
Sbjct: 55 LRRSEIEYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIV 97

[Close]
BLAST of MELO3C032032.2.1 vs. Swiss-Prot
Match: sp|Q8VZ19|RL302_ARATH (60S ribosomal protein L30-2 OS=Arabidopsis thaliana OX=3702 GN=RPL30B PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 6.5e-04
Identity = 22/43 (51.16%), Postives = 28/43 (65.12%), Query Frame = 0 

Query: 31 MNASMADQNAQNALTHLKNYLSGNVDLGTACGKYYRVSCLSII 74
          +  S  +  A  A   + +Y   NVDLGTACGKY+RVSCLSI+
Sbjct: 55 LRRSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIV 97

[Close]
BLAST of MELO3C032032.2.1 vs. Swiss-Prot
Match: sp|Q9C8F7|RL301_ARATH (Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana OX=3702 GN=RPL30A PE=3 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 8.4e-04
Identity = 22/43 (51.16%), Postives = 28/43 (65.12%), Query Frame = 0 

Query: 31 MNASMADQNAQNALTHLKNYLSGNVDLGTACGKYYRVSCLSII 74
          +  S  +  A  A   + +Y   NVDLGTACGKY+RVSCLSI+
Sbjct: 55 LRRSEIEYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIV 97

[Close]
BLAST of MELO3C032032.2.1 vs. Swiss-Prot
Match: sp|Q9LSA3|RL303_ARATH (60S ribosomal protein L30-3 OS=Arabidopsis thaliana OX=3702 GN=RPL30C PE=3 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 8.4e-04
Identity = 22/43 (51.16%), Postives = 27/43 (62.79%), Query Frame = 0 

Query: 31 MNASMADQNAQNALTHLKNYLSGNVDLGTACGKYYRVSCLSII 74
          +  S  +  A  A   +  Y   NVDLGTACGKY+RVSCLSI+
Sbjct: 55 LRRSEIEYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIV 97

[Close]
BLAST of MELO3C032032.2.1 vs. Swiss-Prot
Match: sp|O49884|RL30_LUPLU (60S ribosomal protein L30 OS=Lupinus luteus OX=3873 GN=RPL30 PE=3 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 8.4e-04
Identity = 22/43 (51.16%), Postives = 27/43 (62.79%), Query Frame = 0 

Query: 31 MNASMADQNAQNALTHLKNYLSGNVDLGTACGKYYRVSCLSII 74
          +  S  +  A  A   + +Y   NVDLGTACGKYYRV CLSI+
Sbjct: 55 LRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIV 97

The following BLAST results are available for this feature:
BLAST of MELO3C032032.2.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C032032.2.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G77940.13.6e-0551.16Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein[more]
AT1G36240.14.7e-0551.16Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein[more]
AT3G18740.14.7e-0551.16Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein[more]
BLAST of MELO3C032032.2.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8VZ19|RL302_ARATH6.5e-0451.1660S ribosomal protein L30-2 OS=Arabidopsis thaliana OX=3702 GN=RPL30B PE=3 SV=1[more]
sp|Q9C8F7|RL301_ARATH8.4e-0451.16Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana OX=3702 GN=RPL30A P... [more]
sp|Q9LSA3|RL303_ARATH8.4e-0451.1660S ribosomal protein L30-3 OS=Arabidopsis thaliana OX=3702 GN=RPL30C PE=3 SV=1[more]
sp|O49884|RL30_LUPLU8.4e-0451.1660S ribosomal protein L30 OS=Lupinus luteus OX=3873 GN=RPL30 PE=3 SV=1[more]
BLAST of MELO3C032032.2.1 vs. TrEMBL
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR029064L30e-like
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C032032.2MELO3C032032.2gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C032032.2.1.exon.1MELO3C032032.2.1.exon.1exon
MELO3C032032.2.1.exon.2MELO3C032032.2.1.exon.2exon
MELO3C032032.2.1.exon.3MELO3C032032.2.1.exon.3exon
MELO3C032032.2.1.exon.4MELO3C032032.2.1.exon.4exon
MELO3C032032.2.1.exon.5MELO3C032032.2.1.exon.5exon
MELO3C032032.2.1.exon.6MELO3C032032.2.1.exon.6exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C032032.2.1.five_prime_UTR.1MELO3C032032.2.1.five_prime_UTR.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C032032.2.1.CDS.1MELO3C032032.2.1.CDS.1CDS
MELO3C032032.2.1.CDS.2MELO3C032032.2.1.CDS.2CDS
MELO3C032032.2.1.CDS.3MELO3C032032.2.1.CDS.3CDS
MELO3C032032.2.1.CDS.4MELO3C032032.2.1.CDS.4CDS
MELO3C032032.2.1.CDS.5MELO3C032032.2.1.CDS.5CDS
MELO3C032032.2.1.CDS.6MELO3C032032.2.1.CDS.6CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C032032.2.1.three_prime_UTR.1MELO3C032032.2.1.three_prime_UTR.1three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C032032.2.1MELO3C032032.2.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR02906450S ribosomal protein L30e-likeGENE3DG3DSA:3.30.1330.30coord: 24..81
e-value: 3.4E-7
score: 31.7