MELO3C032032.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C032032.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	60S ribosomal protein L30-like
Location	chr06 : 15010796 .. 15014495 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCACTTTCCTTCTTCAAAATCCCTCCCTTTCCTTCTTCACCCACACTCTCTTTTCCTTCAAAATCCCTCCCCTCACGAACGACGAACGACGCATGATGAAAACCCCAACCTTAACCCCATTCTTCTCATCTCCACGTCCTTTCTTCTTGGCGACAGAGACCCATGGTGAGGAGACCCATAGCATTGCTTGTGAGTTCTTGATCTTTATTTTTTCGTTTCTTCTTCCTCCATTTATCTCTTTCCCTGTGCACAGTCCCACAAATTACCTTGATAAATTCAAGAGGAAGTAGAGTTCTTAGAGACATATAAATAGCACTGATTTCTTGTCTTCTTTGTCTCTCCCTTTCTCTCTCTAACTCAACAACGCCTTTGTCCATTCCTTAAGGTACCATAACTCAAAAATGCATTTTAACTATTTCGTGATTCTTTAAACGTATATTGATGGTTTTGTGAAATATATTGTTGGCTATGTGATGAAGCATTTTGGTAGCTTACAATGTGTTTGATAAAATGCATCAATGAAGCCTTTGGTTGATTTTTAATTGATTTTTGTTTGTTTGAATTAGGAAATCAAGGCCAAGGGAGATTTCATGGCTATGGGAGGAAGCTTTGAGAAAAAGAGAATGAAAATGAATGGTTAGATTTTAAACTTTGATGATGTGTAGGGCCTTTATGTATTTTCTAGAGTTTAGTTGTTACGGGCATACATGTTTAGTGTTAGGTTTTATTTCTAGTAGGGCAGGAATTTCAATCCCCTTTCTTATTGAAAAGAATATTTAGTCTTAGGATGTAATTATGATTGTTTCTCAAATAATGAATTTTGGAATGAATGGTAATTATTTGGATATTTGGTTCTATATTCTGCTATGGTTTCTTACATAGCACTTTAAGGTGCTTACATGTTTTTTTAAAACATGAATGATGGTCTTCGATTCAAATTTTAGTGTGGATTCTGTTGCTTGTAAACTATATTGCACTTAGGAGCTATTTTTACGACATAGATCTTTGGGGTTTGTAGAAATGATAGACTACTGTGTGAAAATTCATATACTAATGATGAACTAAAACTGATGTAAATCTCTATTCTCTACCACATTTTGCCATTAACTTCATGGATTTATCAAGGTGATGCAGACAATTAGTTGTTAATTGCTATGGTATAATGTATTATTGGGATGGGTAAGAATAGATGAGATGAACATTGAGATAGGGGTTGAAACATCCTATAGTTTCTAAGTGTTTGCTTCTTTCCTTGGAGAATTGGTGGCCTAAGAACCCTACTAGTGGTCGTTGTCATAATCTTCTACTATGACTATTTTTTTATGCTGATTTTGAAGCATCAATGGCTGATCAAAATGCACAAAATGCTCTTACACATTTAAAGGTAGTTCATTTAGATTTAATAAAAAATATTCAAGAAACAAATTTTCATACTGATACGTGATAAGAAATGATAAATTGGCTTAATATGAGTTGACTACATTTTTTAGAGTGCTAGGAAGCTATCCAATGGACATTAATATGCCATGAGAAGTTAGAGCATCCAGAAAACTTGGTTTCTCCTTTTTCTTTGTTTTTAATTTATGGAATGGGCTTGTATCACGTAAAACTAGTCATGAGATATGTTAATTTGAATCTCCTCCACCATTCAAATTAACTTATTTATTGCCATTTTTGAGTTTTGATTATGTTATTTATATGGTTGAAGCTTGACTGCTTTGAGTTAATTGTATAAGATTTTGAAAGCTTTAATTGCTTCGAGCTGATTCTTTAAGATTTTAAACTTTGATGATGAGTAGGGTCTTCAGGTTTGGGTTTGGTGGGTAAAAAAGAGTAATTACGTAATTGTTTAGCTATGAAGAAGTTTAGGATCTTATTTAGATCTCTACTCTCTTCTTTTAAAATTCTACTAAGAGGTTTGGTTTTAAGAACATGATTAGTTTGGATATTGTTTTCTTGCTTGTTGCTGTTAGTACTAGACATTGTATGTTTGAAGTTGGTTTACATCAAAACAAGAGCTAAAGAATAATTAGTCTATGATGGAAAATGAATACATTCGAAAATTTATGGAAAAAGACAGTTCAATTTTTGTTTTGTTTCCACTGTTTTGTTGTTGCTCATTGGTGGGTATGTTGTAGAATACTTTGTTGTTCTTACTATAACCTTTGTAGAACTATTTGTCAGGTAGGTGCTTCTTGCATACCTGAGAAGCAAGGCACAAATAGACACAACATAGACAACAAAAATATTTTTATCAAGTGTCATAATATCCTGATGCTGTAGAAGGAGGTTATGGCTAAATTAAGATGTCTATGCTTAGTTTTGTACTTTCCTATTGATTTGTTACCATTGTCTTTCAACAGTTGTTTTGATCTTGGTATGCATCCTATTGAATTCAATGGGTGGGTTTATATCATTGGTTGTAATTGGTTTTCTTCTTACTCATAATATTTATGTTGGTCCATCAATTTAAATTTAACTCATTCCATTTATACATGTTTAGTTTAAATATTAGTTAGTTAATTAGCGACATGTATGGTTGATTGTTCTGCTTTACTTCTATGTATTTTTCAGCCACTGTTATTATTAGTATGTTTTATTTATTATTTTTGTTATAAGTATGTTTAGGTAATGTTGATCTTGGAACTGCTTGTGGCAAGTATTACCGTGTTTCTTGCCTTAGCATTATCATCCAGGTACTAAAAACATTGTTATTTGGTTCATTAAATTTCATATCTACGTGGTTGGATAAGTATGTTACTTGTGATTTTGAATCTAGATAGTGTTTTGCTTTCCTCAATGTAGAATCAATGCATGCATGTAAGTTGCTATCCTAGCTTGATGTAATATGGGATTAATGTGGTGTGTTCTGGGAGATGTAATCAACTAAACAAGAAAATCTGGAAACTTTTTTATCAATATCTTGGAATAAAATAATAATAGCCTAAGATTTATACTAAGATTTTTACCAGGCAAATGTGACCTATCACCTTTTAAACAAGTCAAAGAGTCTATAGTAAGGATAAATTCCAGTAGGTAATTGACAACTAATTACATCATAATGGGTTGAACTAAACTAGTTGTCTTGAATAGAAATGTGACTTACATTCTTTTATAGCCATATTATAATGTAATGTAAACATTTATAATTTGATATATGGCTATCAAATGATTTAGAATCACGGAAAGACGTAGAGGATGTAGGGAAGCACGTACATTGTGCTTAGGATAAGATATTTTAACATACATTTTGTCACATATTTTTGTGTTCGAACTGCCATAGAAAATACAGTGCTGGAGGAAAATACAGCTGCCATGTTCAATATCAATGAGGTAAGGTTATCTTAAAACTTAGTAAAATGCAGTTTTTGAAGTTCATCAAATTATATACTTGCATATGTTGTTGATTAAAATCTGCATTGATTTAGTATATGTAACTTGAATACACTTTTTGCTAAGATGATAAACTCTGTTTTACTTGCCAGGCGCTAAAAGTTGTTCTCAGCCTTCTACTTCAAATCCCAGCACTTCAGAATCCATTTTCATTCAAAGGGTTGCTTTTCTCTCTTTTCATTCAAATCGTACAGACCTTTACGATTACAATATTTGTGTATTAACTTACTCATACAATAATTTGAGTTTATATCTTTTTGTTTTTTAAGTTTTGAATATTGTTGACATCGTGTTTTTTGTCATTTG

mRNA sequence

CTCACTTTCCTTCTTCAAAATCCCTCCCTTTCCTTCTTCACCCACACTCTCTTTTCCTTCAAAATCCCTCCCCTCACGAACGACGAACGACGCATGATGAAAACCCCAACCTTAACCCCATTCTTCTCATCTCCACGTCCTTTCTTCTTGGCGACAGAGACCCATGGTGAGGAGACCCATAGCATTGCTTGAAATCAAGGCCAAGGGAGATTTCATGGCTATGGGAGGAAGCTTTGAGAAAAAGAGAATGAAAATGAATGCATCAATGGCTGATCAAAATGCACAAAATGCTCTTACACATTTAAAGAACTATTTGTCAGGTAATGTTGATCTTGGAACTGCTTGTGGCAAGTATTACCGTGTTTCTTGCCTTAGCATTATCATCCAGGCGCTAAAAGTTGTTCTCAGCCTTCTACTTCAAATCCCAGCACTTCAGAATCCATTTTCATTCAAAGGGTTGCTTTTCTCTCTTTTCATTCAAATCGTACAGACCTTTACGATTACAATATTTGTGTATTAACTTACTCATACAATAATTTGAGTTTATATCTTTTTGTTTTTTAAGTTTTGAATATTGTTGACATCGTGTTTTTTGTCATTTG

Coding sequence (CDS)

ATGGTGAGGAGACCCATAGCATTGCTTGAAATCAAGGCCAAGGGAGATTTCATGGCTATGGGAGGAAGCTTTGAGAAAAAGAGAATGAAAATGAATGCATCAATGGCTGATCAAAATGCACAAAATGCTCTTACACATTTAAAGAACTATTTGTCAGGTAATGTTGATCTTGGAACTGCTTGTGGCAAGTATTACCGTGTTTCTTGCCTTAGCATTATCATCCAGGCGCTAAAAGTTGTTCTCAGCCTTCTACTTCAAATCCCAGCACTTCAGAATCCATTTTCATTCAAAGGGTTGCTTTTCTCTCTTTTCATTCAAATCGTACAGACCTTTACGATTACAATATTTGTGTATTAA

Protein sequence

MVRRPIALLEIKAKGDFMAMGGSFEKKRMKMNASMADQNAQNALTHLKNYLSGNVDLGTACGKYYRVSCLSIIIQALKVVLSLLLQIPALQNPFSFKGLLFSLFIQIVQTFTITIFVY

Homology

[Close]

BLAST of MELO3C032032.2 vs. TAIR10
Match: AT1G77940.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 45.1 bits (105), Expect = 3.6e-05
Identity = 22/43 (51.16%), Postives = 28/43 (65.12%), Query Frame = 0


Query: 31 MNASMADQNAQNALTHLKNYLSGNVDLGTACGKYYRVSCLSII 74
          +  S  +  A  A   + +Y   NVDLGTACGKY+RVSCLSI+
Sbjct: 55 LRRSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIV 97

[Close]

BLAST of MELO3C032032.2 vs. TAIR10
Match: AT1G36240.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 44.7 bits (104), Expect = 4.7e-05
Identity = 22/43 (51.16%), Postives = 28/43 (65.12%), Query Frame = 0


Query: 31 MNASMADQNAQNALTHLKNYLSGNVDLGTACGKYYRVSCLSII 74
          +  S  +  A  A   + +Y   NVDLGTACGKY+RVSCLSI+
Sbjct: 55 LRRSEIEYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIV 97

[Close]

BLAST of MELO3C032032.2 vs. TAIR10
Match: AT3G18740.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 44.7 bits (104), Expect = 4.7e-05
Identity = 22/43 (51.16%), Postives = 27/43 (62.79%), Query Frame = 0


Query: 31 MNASMADQNAQNALTHLKNYLSGNVDLGTACGKYYRVSCLSII 74
          +  S  +  A  A   +  Y   NVDLGTACGKY+RVSCLSI+
Sbjct: 55 LRRSEIEYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIV 97

[Close]

BLAST of MELO3C032032.2 vs. Swiss-Prot
Match: sp|Q8VZ19|RL302_ARATH (60S ribosomal protein L30-2 OS=Arabidopsis thaliana OX=3702 GN=RPL30B PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 6.5e-04
Identity = 22/43 (51.16%), Postives = 28/43 (65.12%), Query Frame = 0


Query: 31 MNASMADQNAQNALTHLKNYLSGNVDLGTACGKYYRVSCLSII 74
          +  S  +  A  A   + +Y   NVDLGTACGKY+RVSCLSI+
Sbjct: 55 LRRSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIV 97

[Close]

BLAST of MELO3C032032.2 vs. Swiss-Prot
Match: sp|Q9C8F7|RL301_ARATH (Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana OX=3702 GN=RPL30A PE=3 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 8.4e-04
Identity = 22/43 (51.16%), Postives = 28/43 (65.12%), Query Frame = 0


Query: 31 MNASMADQNAQNALTHLKNYLSGNVDLGTACGKYYRVSCLSII 74
          +  S  +  A  A   + +Y   NVDLGTACGKY+RVSCLSI+
Sbjct: 55 LRRSEIEYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIV 97

[Close]

BLAST of MELO3C032032.2 vs. Swiss-Prot
Match: sp|Q9LSA3|RL303_ARATH (60S ribosomal protein L30-3 OS=Arabidopsis thaliana OX=3702 GN=RPL30C PE=3 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 8.4e-04
Identity = 22/43 (51.16%), Postives = 27/43 (62.79%), Query Frame = 0


Query: 31 MNASMADQNAQNALTHLKNYLSGNVDLGTACGKYYRVSCLSII 74
          +  S  +  A  A   +  Y   NVDLGTACGKY+RVSCLSI+
Sbjct: 55 LRRSEIEYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIV 97

[Close]

BLAST of MELO3C032032.2 vs. Swiss-Prot
Match: sp|O49884|RL30_LUPLU (60S ribosomal protein L30 OS=Lupinus luteus OX=3873 GN=RPL30 PE=3 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 8.4e-04
Identity = 22/43 (51.16%), Postives = 27/43 (62.79%), Query Frame = 0


Query: 31 MNASMADQNAQNALTHLKNYLSGNVDLGTACGKYYRVSCLSII 74
          +  S  +  A  A   + +Y   NVDLGTACGKYYRV CLSI+
Sbjct: 55 LRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIV 97

The following BLAST results are available for this feature:

BLAST of MELO3C032032.2 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C032032.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G77940.1	3.6e-05	51.16	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G36240.1	4.7e-05	51.16	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT3G18740.1	4.7e-05	51.16	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

BLAST of MELO3C032032.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8VZ19\|RL302_ARATH	6.5e-04	51.16	60S ribosomal protein L30-2 OS=Arabidopsis thaliana OX=3702 GN=RPL30B PE=3 SV=1	[more]
sp\|Q9C8F7\|RL301_ARATH	8.4e-04	51.16	Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana OX=3702 GN=RPL30A P...	[more]
sp\|Q9LSA3\|RL303_ARATH	8.4e-04	51.16	60S ribosomal protein L30-3 OS=Arabidopsis thaliana OX=3702 GN=RPL30C PE=3 SV=1	[more]
sp\|O49884\|RL30_LUPLU	8.4e-04	51.16	60S ribosomal protein L30 OS=Lupinus luteus OX=3873 GN=RPL30 PE=3 SV=1	[more]

BLAST of MELO3C032032.2 vs. TrEMBL


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR029064	L30e-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032032.2.1	MELO3C032032.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029064	50S ribosomal protein L30e-like	GENE3D	G3DSA:3.30.1330.30		coord: 24..81 e-value: 3.4E-7 score: 31.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C032032.2	Cucumber (Gy14) v1	cgymedB338
MELO3C032032.2	Cucurbita maxima (Rimu)	cmamedB274
MELO3C032032.2	Cucurbita maxima (Rimu)	cmamedB496
MELO3C032032.2	Cucurbita moschata (Rifu)	cmomedB261
MELO3C032032.2	Cucurbita moschata (Rifu)	cmomedB483
MELO3C032032.2	Cucurbita pepo (Zucchini)	cpemedB630
MELO3C032032.2	Cucurbita pepo (Zucchini)	cpemedB694
MELO3C032032.2	Wild cucumber (PI 183967)	cpimedB240
MELO3C032032.2	Cucumber (Chinese Long) v2	cumedB239
MELO3C032032.2	Bottle gourd (USVL1VR-Ls)	lsimedB384
MELO3C032032.2	Watermelon (Charleston Gray)	medwcgB417
MELO3C032032.2	Watermelon (97103) v1	medwmB448
MELO3C032032.2	Silver-seed gourd	carmedB0771
MELO3C032032.2	Cucumber (Chinese Long) v3	cucmedB247
MELO3C032032.2	Watermelon (97103) v2	medwmbB424
MELO3C032032.2	Wax gourd	medwgoB531
MELO3C032032.2	Cucumber (Gy14) v2	cgybmedB216