MELO3C031993.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C031993.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Myb/SANT-like DNA-binding domain protein
Location	chr06 : 12741027 .. 12742228 (+)
Sequence length	1123

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTCATTTCTAGCATGGCAAGTTCATCGAGACTACCTAAGCACAATTGGACTAAAGAGGAAGAGATAGGCCTCATCGAGTGCCTCGTAGAGTTAGTCAATGCTGGTGGGTGGAGGTCCGACAACGGGACGTGTCGACTCGGATACCAAAATCAGCTGGCGAGAATGATGGCCTTCAAGATCCCAAATTCTAAGGTCCATGTTTCAACGATCGATAACCAAATAAAATTGTTGAAGAGAATGTTCCATGCAATTGTGGAGATGTATGGCCCAACTTGCAATGGTTTTGGGTGGAATGATGAACAAAAATGCATCGTCGCAGAGAAAGAAGTCTTCGACGATTGGGTCAAGGTGCGTTACTAGTCATTTGTGTGATTATTGTAGTATATTTCAAAAAATGGACTAAAAATGTATTATTGCACTTATACAGAGTCATCTGGCGGCTAAGGGCCTCTTTAATAAGTCGTTTCTCCACTATGACGAACTGTCGTACGTGTTTAGCAAAGATCGTGCAACGGGAGGCCGGACTGAGAGTTTTGCAGACGTTGGGTCAAACGATCCTACTGGGTATGAGACATTTGCCACTGTCGCTGCGTCGGATACGGACTTCCAACCTATGTACAATCAAAGATTGAACATGTCGCCTGGTGAATTGATGGGAACAAAAACCGCTCGGGTAAGTGAAGGTAGGTATGTTTCAAGCGGGTCTAAACAGAAACGTGGAGGACAAGACACAGACAGTGGGGACGTACTTTGCACTGCGGTTGAGTATGGAAATGTACAATTGAACCGCATTGCTGAATGACTTGTCCTACAACGTCAAGACGCAAGCCAAGCACATCAAGAGGTTGTCCAACAGTTGGAGGCCATCCATGAGCTGACATTAATGGATAGGTGTCGCTTAATGCGTATACTTATGCGTAACGTCGATCACATGAAAGCTTTCCTTGAGGTTCCCGACAATATATAGTATCCGTACTGCAACATCATTCTTCAAGAAAACCGATGACTAGTTTGTTTGTTGTATTTGTATTACTGGCTTTTTTTACTTGGACTATATGTTCTTCTTCTTACTTGTTTTGTCTTACTATCTAACGAACTTCTCTTTATGTTCAAGCTTTATGGTTTGTATTTTCATTTCGCTTTCCAATGTAATGATTTGATATTGTTTCATTATCGTATTAATGTACTATTTTCGTTCAA

mRNA sequence

GTTTCATTTCTAGCATGGCAAGTTCATCGAGACTACCTAAGCACAATTGGACTAAAGAGGAAGAGATAGGCCTCATCGAGTGCCTCGTAGAGTTAGTCAATGCTGGTGGGTGGAGGTCCGACAACGGGACGTGTCGACTCGGATACCAAAATCAGCTGGCGAGAATGATGGCCTTCAAGATCCCAAATTCTAAGGTCCATGTTTCAACGATCGATAACCAAATAAAATTGTTGAAGAGAATGTTCCATGCAATTGTGGAGATGTATGGCCCAACTTGCAATGGTTTTGGGTGGAATGATGAACAAAAATGCATCGTCGCAGAGAAAGAAGTCTTCGACGATTGGGTCAAGAGTCATCTGGCGGCTAAGGGCCTCTTTAATAAGTCGTTTCTCCACTATGACGAACTGTCGTACGTGTTTAGCAAAGATCGTGCAACGGGAGGCCGGACTGAGAGTTTTGCAGACGTTGGGTCAAACGATCCTACTGGGTATGAGACATTTGCCACTGTCGCTGCGTCGGATACGGACTTCCAACCTATGTACAATCAAAGATTGAACATGTCGCCTGGTGAATTGATGGGAACAAAAACCGCTCGGGTAAGTGAAGGTAGGTATGTTTCAAGCGGGTCTAAACAGAAACGTGGAGGACAAGACACAGACAGTGGGGACGTACTTTGCACTGCGGTTGAGTATGGAAATGTACAATTGAACCGCATTGCTGAATGACTTGTCCTACAACGTCAAGACGCAAGCCAAGCACATCAAGAGGTTGTCCAACAGTTGGAGGCCATCCATGAGCTGACATTAATGGATAGGTGTCGCTTAATGCGTATACTTATGCGTAACGTCGATCACATGAAAGCTTTCCTTGAGGTTCCCGACAATATATAGTATCCGTACTGCAACATCATTCTTCAAGAAAACCGATGACTAGTTTGTTTGTTGTATTTGTATTACTGGCTTTTTTTACTTGGACTATATGTTCTTCTTCTTACTTGTTTTGTCTTACTATCTAACGAACTTCTCTTTATGTTCAAGCTTTATGGTTTGTATTTTCATTTCGCTTTCCAATGTAATGATTTGATATTGTTTCATTATCGTATTAATGTACTATTTTCGTTCAA

Coding sequence (CDS)

ATGGCAAGTTCATCGAGACTACCTAAGCACAATTGGACTAAAGAGGAAGAGATAGGCCTCATCGAGTGCCTCGTAGAGTTAGTCAATGCTGGTGGGTGGAGGTCCGACAACGGGACGTGTCGACTCGGATACCAAAATCAGCTGGCGAGAATGATGGCCTTCAAGATCCCAAATTCTAAGGTCCATGTTTCAACGATCGATAACCAAATAAAATTGTTGAAGAGAATGTTCCATGCAATTGTGGAGATGTATGGCCCAACTTGCAATGGTTTTGGGTGGAATGATGAACAAAAATGCATCGTCGCAGAGAAAGAAGTCTTCGACGATTGGGTCAAGAGTCATCTGGCGGCTAAGGGCCTCTTTAATAAGTCGTTTCTCCACTATGACGAACTGTCGTACGTGTTTAGCAAAGATCGTGCAACGGGAGGCCGGACTGAGAGTTTTGCAGACGTTGGGTCAAACGATCCTACTGGGTATGAGACATTTGCCACTGTCGCTGCGTCGGATACGGACTTCCAACCTATGTACAATCAAAGATTGAACATGTCGCCTGGTGAATTGATGGGAACAAAAACCGCTCGGGTAAGTGAAGGTAGGTATGTTTCAAGCGGGTCTAAACAGAAACGTGGAGGACAAGACACAGACAGTGGGGACGTACTTTGCACTGCGGTTGAGTATGGAAATGTACAATTGAACCGCATTGCTGAATGA

Protein sequence

MASSSRLPKHNWTKEEEIGLIECLVELVNAGGWRSDNGTCRLGYQNQLARMMAFKIPNSKVHVSTIDNQIKLLKRMFHAIVEMYGPTCNGFGWNDEQKCIVAEKEVFDDWVKSHLAAKGLFNKSFLHYDELSYVFSKDRATGGRTESFADVGSNDPTGYETFATVAASDTDFQPMYNQRLNMSPGELMGTKTARVSEGRYVSSGSKQKRGGQDTDSGDVLCTAVEYGNVQLNRIAE

Homology

[Close]

BLAST of MELO3C031993.2.1 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 372.9 bits (956), Expect = 8.3e-100
Identity = 180/236 (76.27%), Postives = 199/236 (84.32%), Query Frame = 0


Query: 1   MASSSRLPKHNWTKEEEIGLIECLVELVNAGGWRSDNGTCRLGYQNQLARMMAFKIPNSK 60
           M SSSRLPKH WTKEEE GL+ECLVELVNAGGWRSDNGT R GY NQLARMMAFKIP S 
Sbjct: 356 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 415

Query: 61  VHVSTIDNQIKLLKRMFHAIVEMYGPTCNGFGWNDEQKCIVAEKEVFDDWVKSHLAAKGL 120
           +H STID++IKL+KRMFHA+ EM GP C+GFGWNDE+KCIVAEKEVFDDW  SH AAKGL
Sbjct: 416 IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 475

Query: 121 FNKSFLHYDELSYVFSKDRATGGRTESFADVGSNDPTGYETFATVAASDTDFQPMYNQRL 180
            NKSF+HYDELSYVF KDRATGGR ESFAD+GSNDP GY+  A  A  DTDF PMY+  L
Sbjct: 476 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGL 535

Query: 181 NMSPGELMGTKTARVSEGRYVSSGSKQKRGGQDTDSGDVLCTAVEYGNVQLNRIAE 237
           NMSP +LM T+TARVSE R VSSGSK+KR G  TDSGD++ TA+EYGN QL+RIAE
Sbjct: 536 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAE 589

[Close]

BLAST of MELO3C031993.2.1 vs. NCBI nr
Match: XP_008459131.1 (PREDICTED: uncharacterized protein LOC103498331 [Cucumis melo])

HSP 1 Score: 340.9 bits (873), Expect = 3.5e-90
Identity = 168/236 (71.19%), Postives = 187/236 (79.24%), Query Frame = 0


Query: 1   MASSSRLPKHNWTKEEEIGLIECLVELVNAGGWRSDNGTCRLGYQNQLARMMAFKIPNSK 60
           M SSSRLPKH WTKEEE      LVELVNAGGWRSDNGT   GY NQLARMMAFKIP   
Sbjct: 1   MTSSSRLPKHTWTKEEEAS----LVELVNAGGWRSDNGTFHPGYLNQLARMMAFKIPGCN 60

Query: 61  VHVSTIDNQIKLLKRMFHAIVEMYGPTCNGFGWNDEQKCIVAEKEVFDDWVKSHLAAKGL 120
           +H STID++IKLLKRMFHA+ EM GP C+GFGWNDE+KCIVAEKE       SH AAKGL
Sbjct: 61  IHASTIDSRIKLLKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKE-------SHPAAKGL 120

Query: 121 FNKSFLHYDELSYVFSKDRATGGRTESFADVGSNDPTGYETFATVAASDTDFQPMYNQRL 180
            NKSF+HYDELSYVF KDRATGGR E FAD+GSNDP GY+ F   AA DT+F PMY+ RL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAEIFADIGSNDPAGYDAFVADAAPDTNFSPMYSPRL 180

Query: 181 NMSPGELMGTKTARVSEGRYVSSGSKQKRGGQDTDSGDVLCTAVEYGNVQLNRIAE 237
           NMSP +LM T+TARVSE R VSSGS++K  G  TDSGD++CTA+ YGN QL+RIAE
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSRRKHTGHATDSGDIVCTAIVYGNEQLHRIAE 225

[Close]

BLAST of MELO3C031993.2.1 vs. NCBI nr
Match: XP_008466949.1 (PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo])

HSP 1 Score: 312.0 bits (798), Expect = 1.7e-81
Identity = 147/192 (76.56%), Postives = 160/192 (83.33%), Query Frame = 0


Query: 1   MASSSRLPKHNWTKEEEIGLIECLVELVNAGGWRSDNGTCRLGYQNQLARMMAFKIPNSK 60
           M SSSRLPKH WTKEEE G    LVELVN GGWRSDNGT R GY NQLARMMAFKIP S 
Sbjct: 1   MTSSSRLPKHTWTKEEEAG----LVELVNVGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  VHVSTIDNQIKLLKRMFHAIVEMYGPTCNGFGWNDEQKCIVAEKEVFDDWVKSHLAAKGL 120
           +H STID++IKL+KRMFHA+ EM GP C+GFGWNDE+KCIVAEKEVFDDWVKSH  AKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPTAKGL 120

Query: 121 FNKSFLHYDELSYVFSKDRATGGRTESFADVGSNDPTGYETFATVAASDTDFQPMYNQRL 180
            NKSF+HYDELSYVF KDRATGGR ESFAD+GSNDP GY+ FA  A  DTDF PMY+ RL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAMPDTDFPPMYSLRL 180

Query: 181 NMSPGELMGTKT 193
           NMSP +LM T+T
Sbjct: 181 NMSPDDLMETRT 188

[Close]

BLAST of MELO3C031993.2.1 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo])

HSP 1 Score: 263.1 bits (671), Expect = 9.2e-67
Identity = 128/238 (53.78%), Postives = 172/238 (72.27%), Query Frame = 0


Query: 1   MASSSRLPKHNWTKEEEIGLIECLVELVNAGGWRSDNGTCRLGYQNQLARMMAFKIPNSK 60
           MAS SR PKH WTKEEE   +ECLVELV++GGWRSDNGT + GY  QL RMMA K+P + 
Sbjct: 1   MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61  V-HVSTIDNQIKLLKRMFHAIVEMYGPTCNGFGWNDEQKCIVAEKEVFDDWVKSHLAAKG 120
           +   STID  +K LK+ +HAI EM GP+C+GFGWN+E +CI+AE+++FD W+KSH AAKG
Sbjct: 61  IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKG 120

Query: 121 LFNKSFLHYDELSYVFSKDRATGGRTESFADVGSNDPTGY-ETFATVAASDTDFQPMYNQ 180
           L +KSF +YD+LSYVF KDRATG R+E+F +VGSN    + +T     + D D   MY+Q
Sbjct: 121 LLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQ 180

Query: 181 RLNMSPGELMGTKTARVSEGRYVSSGSKQKRGGQDTDSGDVLCTAVEYGNVQLNRIAE 237
            ++MSP E+ G +  + SE R  SS SK+KRG +  ++ +V+ + +E+GN QL  IA+
Sbjct: 181 GVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIAD 238

[Close]

BLAST of MELO3C031993.2.1 vs. NCBI nr
Match: ADN33754.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 201.1 bits (510), Expect = 4.3e-48
Identity = 105/216 (48.61%), Postives = 142/216 (65.74%), Query Frame = 0


Query: 23  CLVELVNAGGWRSDNGTCRLGYQNQLARMMAFKIPNSKVHVST-IDNQIKLLKRMFHAIV 82
           C +ELV+ GGW+SDNGT R GY  QL RMMA K+   +V  +T ID +IK LKR F AI 
Sbjct: 340 CGMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQAIA 399

Query: 83  EMYGPTCNGFGWNDEQKCIVAEKEVFDDWVKSHLAAKGLFNKSFLHYDELSYVFSKDRAT 142
           EM GP C+GFGWNDE+KCIVAEKE+FD+WV+S  AAKGL N  F +YDEL+YVF +DRAT
Sbjct: 400 EMLGPACSGFGWNDEEKCIVAEKELFDNWVRSPPAAKGLLNNPFPYYDELTYVFGRDRAT 459

Query: 143 GGRTESFADVGSNDP-TGYETFATVAASDTDFQPMYNQRLNMSPGELMGTKTARVSEGRY 202
           G   E+FADVGSN+P  GY+ F  +   + DF P+Y++ +++   ++  ++ +       
Sbjct: 460 GRFAETFADVGSNEPGGGYDRF-DMGDGNEDFPPVYSRGVDILQDDVRASRPSXXXXXXX 519

Query: 203 VSSGSKQKRGGQDTDSGDVLCTAVEYGNVQLNRIAE 237
                 +KRG Q     + +  A++  N QL +IAE
Sbjct: 520 XXXXXXRKRGSQRDFDVEAIHLALDQTNEQLRQIAE 554

[Close]

BLAST of MELO3C031993.2.1 vs. TAIR10
Match: AT1G30140.1 (unknown protein)

HSP 1 Score: 65.1 bits (157), Expect = 6.7e-11
Identity = 44/151 (29.14%), Postives = 82/151 (54.30%), Query Frame = 0


Query: 8   PKHNWTKEEEIGLIECLVELVNAGGWRSDNGTC-RLGYQNQLARMMAFKIPNSKVHVSTI 67
           P + WT +E     + L+EL+    WR  +G   +L  +++L   +  ++  +K H + +
Sbjct: 13  PYNQWTPDE----TDVLIELIRQ-NWRDSSGIIGKLTVESKLLPALNKRLGCNKNHKNYM 72

Query: 68  DNQIKLLKRMFHAIVEMYGPTCNGFGWNDEQKCIVAEKEVFDDWVKSHLAAKGLFNKSFL 127
            +++K LK ++ + +++     +GFGW+ E K   A  EV+ D++K+H   K +  +S  
Sbjct: 73  -SRLKFLKNLYQSYLDL-KRFSSGFGWDPETKKFTAPDEVWRDYLKAHPNHKHMQTESID 132

Query: 128 HYDELSYVFSKDRATGGRTESFADVGSNDPT 158
           H+++L  +F    ATG    SFA VG +D T
Sbjct: 133 HFEDLQIIFGDVVATG----SFA-VGMSDST 151

[Close]

BLAST of MELO3C031993.2.1 vs. TAIR10
Match: AT4G02210.1 (unknown protein)

HSP 1 Score: 52.4 bits (124), Expect = 4.5e-07
Identity = 36/140 (25.71%), Postives = 66/140 (47.14%), Query Frame = 0


Query: 12  WTKEEEIGLIECLVELVNAGGWRSDNGTCRLGYQNQLARMMA-FKIPNSKVHVSTIDNQI 71
           WT E +   IE +VE V  G    D+   +  ++       A FK    K     + N+ 
Sbjct: 14  WTPEMDQYFIELMVEQVRKGNRFEDHLFSKRAWKFMSCSFTAKFKFLYGK---DVLKNRH 73

Query: 72  KLLKRMFHAIVEMYGPTCNGFGWNDEQKCIVAEKEVFDDWVKSHLAAKGLFNKSFLHYDE 131
           K L+ +F ++  +     +GF W+D ++ +VA+  V+D+++K H  ++    KS   Y +
Sbjct: 74  KTLRNLFKSVNNLL--IEDGFSWDDTRQMVVADNCVWDEYLKIHPDSRSFRIKSIPCYKD 133

Query: 132 LSYVFSKDRATGGRTESFAD 151
           L  V+S   +     ES ++
Sbjct: 134 LCLVYSDGMSEHKAEESISE 148

[Close]

BLAST of MELO3C031993.2.1 vs. TrEMBL
Match: tr|E5GCB5|E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 5.5e-100
Identity = 180/236 (76.27%), Postives = 199/236 (84.32%), Query Frame = 0


Query: 1   MASSSRLPKHNWTKEEEIGLIECLVELVNAGGWRSDNGTCRLGYQNQLARMMAFKIPNSK 60
           M SSSRLPKH WTKEEE GL+ECLVELVNAGGWRSDNGT R GY NQLARMMAFKIP S 
Sbjct: 356 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 415

Query: 61  VHVSTIDNQIKLLKRMFHAIVEMYGPTCNGFGWNDEQKCIVAEKEVFDDWVKSHLAAKGL 120
           +H STID++IKL+KRMFHA+ EM GP C+GFGWNDE+KCIVAEKEVFDDW  SH AAKGL
Sbjct: 416 IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 475

Query: 121 FNKSFLHYDELSYVFSKDRATGGRTESFADVGSNDPTGYETFATVAASDTDFQPMYNQRL 180
            NKSF+HYDELSYVF KDRATGGR ESFAD+GSNDP GY+  A  A  DTDF PMY+  L
Sbjct: 476 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGL 535

Query: 181 NMSPGELMGTKTARVSEGRYVSSGSKQKRGGQDTDSGDVLCTAVEYGNVQLNRIAE 237
           NMSP +LM T+TARVSE R VSSGSK+KR G  TDSGD++ TA+EYGN QL+RIAE
Sbjct: 536 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAE 589

[Close]

BLAST of MELO3C031993.2.1 vs. TrEMBL
Match: tr|A0A1S3C8Z4|A0A1S3C8Z4_CUCME (uncharacterized protein LOC103498331 OS=Cucumis melo OX=3656 GN=LOC103498331 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 2.3e-90
Identity = 168/236 (71.19%), Postives = 187/236 (79.24%), Query Frame = 0


Query: 1   MASSSRLPKHNWTKEEEIGLIECLVELVNAGGWRSDNGTCRLGYQNQLARMMAFKIPNSK 60
           M SSSRLPKH WTKEEE      LVELVNAGGWRSDNGT   GY NQLARMMAFKIP   
Sbjct: 1   MTSSSRLPKHTWTKEEEAS----LVELVNAGGWRSDNGTFHPGYLNQLARMMAFKIPGCN 60

Query: 61  VHVSTIDNQIKLLKRMFHAIVEMYGPTCNGFGWNDEQKCIVAEKEVFDDWVKSHLAAKGL 120
           +H STID++IKLLKRMFHA+ EM GP C+GFGWNDE+KCIVAEKE       SH AAKGL
Sbjct: 61  IHASTIDSRIKLLKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKE-------SHPAAKGL 120

Query: 121 FNKSFLHYDELSYVFSKDRATGGRTESFADVGSNDPTGYETFATVAASDTDFQPMYNQRL 180
            NKSF+HYDELSYVF KDRATGGR E FAD+GSNDP GY+ F   AA DT+F PMY+ RL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAEIFADIGSNDPAGYDAFVADAAPDTNFSPMYSPRL 180

Query: 181 NMSPGELMGTKTARVSEGRYVSSGSKQKRGGQDTDSGDVLCTAVEYGNVQLNRIAE 237
           NMSP +LM T+TARVSE R VSSGS++K  G  TDSGD++CTA+ YGN QL+RIAE
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSRRKHTGHATDSGDIVCTAIVYGNEQLHRIAE 225

[Close]

BLAST of MELO3C031993.2.1 vs. TrEMBL
Match: tr|A0A1S3CTN6|A0A1S3CTN6_CUCME (uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.1e-81
Identity = 147/192 (76.56%), Postives = 160/192 (83.33%), Query Frame = 0


Query: 1   MASSSRLPKHNWTKEEEIGLIECLVELVNAGGWRSDNGTCRLGYQNQLARMMAFKIPNSK 60
           M SSSRLPKH WTKEEE G    LVELVN GGWRSDNGT R GY NQLARMMAFKIP S 
Sbjct: 1   MTSSSRLPKHTWTKEEEAG----LVELVNVGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  VHVSTIDNQIKLLKRMFHAIVEMYGPTCNGFGWNDEQKCIVAEKEVFDDWVKSHLAAKGL 120
           +H STID++IKL+KRMFHA+ EM GP C+GFGWNDE+KCIVAEKEVFDDWVKSH  AKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPTAKGL 120

Query: 121 FNKSFLHYDELSYVFSKDRATGGRTESFADVGSNDPTGYETFATVAASDTDFQPMYNQRL 180
            NKSF+HYDELSYVF KDRATGGR ESFAD+GSNDP GY+ FA  A  DTDF PMY+ RL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAMPDTDFPPMYSLRL 180

Query: 181 NMSPGELMGTKT 193
           NMSP +LM T+T
Sbjct: 181 NMSPDDLMETRT 188

[Close]

BLAST of MELO3C031993.2.1 vs. TrEMBL
Match: tr|A0A1S3B4L3|A0A1S3B4L3_CUCME (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 6.1e-67
Identity = 128/238 (53.78%), Postives = 172/238 (72.27%), Query Frame = 0


Query: 1   MASSSRLPKHNWTKEEEIGLIECLVELVNAGGWRSDNGTCRLGYQNQLARMMAFKIPNSK 60
           MAS SR PKH WTKEEE   +ECLVELV++GGWRSDNGT + GY  QL RMMA K+P + 
Sbjct: 1   MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61  V-HVSTIDNQIKLLKRMFHAIVEMYGPTCNGFGWNDEQKCIVAEKEVFDDWVKSHLAAKG 120
           +   STID  +K LK+ +HAI EM GP+C+GFGWN+E +CI+AE+++FD W+KSH AAKG
Sbjct: 61  IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKG 120

Query: 121 LFNKSFLHYDELSYVFSKDRATGGRTESFADVGSNDPTGY-ETFATVAASDTDFQPMYNQ 180
           L +KSF +YD+LSYVF KDRATG R+E+F +VGSN    + +T     + D D   MY+Q
Sbjct: 121 LLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQ 180

Query: 181 RLNMSPGELMGTKTARVSEGRYVSSGSKQKRGGQDTDSGDVLCTAVEYGNVQLNRIAE 237
            ++MSP E+ G +  + SE R  SS SK+KRG +  ++ +V+ + +E+GN QL  IA+
Sbjct: 181 GVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIAD 238

[Close]

BLAST of MELO3C031993.2.1 vs. TrEMBL
Match: tr|E5GBB2|E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.9e-48
Identity = 105/216 (48.61%), Postives = 142/216 (65.74%), Query Frame = 0


Query: 23  CLVELVNAGGWRSDNGTCRLGYQNQLARMMAFKIPNSKVHVST-IDNQIKLLKRMFHAIV 82
           C +ELV+ GGW+SDNGT R GY  QL RMMA K+   +V  +T ID +IK LKR F AI 
Sbjct: 340 CGMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQAIA 399

Query: 83  EMYGPTCNGFGWNDEQKCIVAEKEVFDDWVKSHLAAKGLFNKSFLHYDELSYVFSKDRAT 142
           EM GP C+GFGWNDE+KCIVAEKE+FD+WV+S  AAKGL N  F +YDEL+YVF +DRAT
Sbjct: 400 EMLGPACSGFGWNDEEKCIVAEKELFDNWVRSPPAAKGLLNNPFPYYDELTYVFGRDRAT 459

Query: 143 GGRTESFADVGSNDP-TGYETFATVAASDTDFQPMYNQRLNMSPGELMGTKTARVSEGRY 202
           G   E+FADVGSN+P  GY+ F  +   + DF P+Y++ +++   ++  ++ +       
Sbjct: 460 GRFAETFADVGSNEPGGGYDRF-DMGDGNEDFPPVYSRGVDILQDDVRASRPSXXXXXXX 519

Query: 203 VSSGSKQKRGGQDTDSGDVLCTAVEYGNVQLNRIAE 237
                 +KRG Q     + +  A++  N QL +IAE
Sbjct: 520 XXXXXXRKRGSQRDFDVEAIHLALDQTNEQLRQIAE 554

The following BLAST results are available for this feature:

BLAST of MELO3C031993.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34114.1	8.3e-100	76.27	retrotransposon protein [Cucumis melo subsp. melo]	[more]
XP_008459131.1	3.5e-90	71.19	PREDICTED: uncharacterized protein LOC103498331 [Cucumis melo]	[more]
XP_008466949.1	1.7e-81	76.56	PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo]	[more]
XP_008441954.1	9.2e-67	53.78	PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]	[more]
ADN33754.1	4.3e-48	48.61	retrotransposon protein [Cucumis melo subsp. melo]	[more]

BLAST of MELO3C031993.2.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G30140.1	6.7e-11	29.14	unknown protein	[more]
AT4G02210.1	4.5e-07	25.71	unknown protein	[more]

BLAST of MELO3C031993.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C031993.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|E5GCB5\|E5GCB5_CUCME	5.5e-100	76.27	Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A1S3C8Z4\|A0A1S3C8Z4_CUCME	2.3e-90	71.19	uncharacterized protein LOC103498331 OS=Cucumis melo OX=3656 GN=LOC103498331 PE=...	[more]
tr\|A0A1S3CTN6\|A0A1S3CTN6_CUCME	1.1e-81	76.56	uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=...	[more]
tr\|A0A1S3B4L3\|A0A1S3B4L3_CUCME	6.1e-67	53.78	uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=...	[more]
tr\|E5GBB2\|E5GBB2_CUCME	2.9e-48	48.61	Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR024752	Myb/SANT-like_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C031993.2	MELO3C031993.2	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C031993.2.1	MELO3C031993.2.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C031993.2.1.five_prime_UTR.1	MELO3C031993.2.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C031993.2.1.exon.1	MELO3C031993.2.1.exon.1	exon
MELO3C031993.2.1.exon.2	MELO3C031993.2.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C031993.2.1.CDS.1	MELO3C031993.2.1.CDS.1	CDS
MELO3C031993.2.1.CDS.2	MELO3C031993.2.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C031993.2.1.three_prime_UTR.1	MELO3C031993.2.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 11..108 e-value: 1.1E-6 score: 29.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 198..217
None	No IPR available	PANTHER	PTHR31704	FAMILY NOT NAMED	coord: 9..152
None	No IPR available	PANTHER	PTHR31704:SF62	SUBFAMILY NOT NAMED	coord: 9..152