MELO3C031985.2.1 (mRNA) Melon (DHL92) v3.6.1

Overview
NameMELO3C031985.2.1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionSCY1-like protein 2
Locationchr06 : 12511820 .. 12513685 (+)
Sequence length403
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATTTTCTATTTGATTTGGCTGAGGAAATGAGTGCTTTTGTCTTACTTAAAAGAGGTATGAAAGTGGCTGGGACATTGCCAATCGAAATTACTAGGCTGTAAGTTTTGTTAACATAATTTTGTTTTACTATTTATGATTGTCATATTTTGCCCTTAATTCTACTATTCAATACAATTTCTTGTAATTAGTTTTTGTTGTATGCTAGCAAGATATATCATTTGGAGTGGTTAGAAAATCTTTGGAGTGTCGTATTACAGTGTGCATTGAAATACGACGTATAACATTGCCCTAAATTTATGTTATTGGGTTTTAGCATTTTAGTTGAATTTAATTAGGTTTTTGAATTAATGAGTTTGGATAGAATGCTTCTTGGGGTATTGGGACATTCCGATCTTTGATGTAGAAAGTTGGGACATTAGTTGTAAAAAGTGGTAAAAATTTCTGTTGTTTTGAGTAGTTTTGGGTTGCTATTATTTGAAAGTTGATTAATAATGTTTTAAGATTAGGAAATGGAATATTAGACCGAGTTTTTTTTTACACTAATTGTGGTAAAGAACATGGAACTGAACCCGATGTTGTTCCAATCTAAAGGAGAAAATCAACAAGTGTTTATATTTATCTTGGTTGAAAATTGCTTCTTGTTTCGGATGCGAATGCTCAACTTGAAATCTGATTTGTAGGGTGAATTGGGGAGTTGAAGTTTCAATTGATTTAAATTTGCTTCCATGTGGTGGAATGTTATGGATCAAATATTTTTTTTTTTTTTTTTTTGTTTGCTTCATTTGCTTCTCATTTTTTTCGTTTTTCGATCTCGGTTTATTATTTTTGGATTTTATTAAGTTTTTTTGGGGGTTTTATTTATTTCTTGGTTGCTTTCTTCAAATTAACTTGATAAATTTACTGCATCTATAACTGTTAGCCTGGTTGTAGGGTTGTCATTTGTAAATGTAAATGTTTTGTGGAAGTGTTTTAGATGAAAACATTTTTAGTATTTCTGATAAGTTTGTTGGAAAATTCTGTTTATAGACCTTTTCATTCGTTAATTTTTTTTTAGAAAATGAATTCTGACTTTTTTATATATTTTTTTTTTTTTATACTTCTCATATGTGTCATACTTATGATTTTTTTTTTTTTGTTTGGATCACTAATCATGTGATGCTTGTAGTTTTCATAAAAGCTTCTCTATTCTCATCGGCTTGTTCCTCATTGACATTTTACAGAAAATGAGATTACTTGAAATAAAACATGGTTTGCTTCAACTAGCAGAGTCTTTAAACTTTCTTCATAGCAATGCACATCTCATTCACCGTGCTATATCTTCAGAGGTATCAATTTTATTTCAACGTTTTTTTTCTAGTAGTTTAAAACTTTTTATTAAGTTTTTTTGGGAGTATTTGGAGTTTTTTCTAGTGCTTCATTTGAGAACTGAAGTGTTGAATGATACAAACACCATACAAATGGAGTTTTGTTGATGTATTGAAGCAGGAGAAATTTATGCGGTAAGGAAGGCGTTTTGTATTATAATATATAAATCATAATATAGTAGGTGTTTATGGATCATGCGTGTGTTTTCTGTACGCGTTTTGTATTTATGTGTTGCCTGTAATATATTTTGTTTTGGACTTTGTGTGAAGTTTTGTAATTCATTTAGCTGAGTTTGTGTGTTGTATTGTTGAATCAATTTTGTTTCATTTTATTTTCTTACTAGGTTTTGCCAGAATCCATTGGAGCAACGAAGCCATATTTGCGGCAATTCATTGATGTATAGGCATTTTTGTAGGTTTGATAGGAAAATTTCTGGTTTAAGTGTAGTTCTTTAAATAGCTTGTTCGTAACAAACCATATAATAGTGCACGAAAAAC

mRNA sequence

ATGTATTTTCTATTTGATTTGGCTGAGGAAATGAGTGCTTTTGTCTTACTTAAAAGAGGTATGAAAGTGGCTGGGACATTGCCAATCGAAATTACTAGGCTCTTCTCTATTCTCATCGGCTTGTTCCTCATTGACATTTTACAGAAAATGAGATTACTTGAAATAAAACATGGTTTGCTTCAACTAGCAGAGTCTTTAAACTTTCTTCATAGCAATGCACATCTCATTCACCGTGCTATATCTTCAGAGGTTTTGCCAGAATCCATTGGAGCAACGAAGCCATATTTGCGGCAATTCATTGATGTATAGGCATTTTTGTAGGTTTGATAGGAAAATTTCTGGTTTAAGTGTAGTTCTTTAAATAGCTTGTTCGTAACAAACCATATAATAGTGCACGAAAAAC

Coding sequence (CDS)

ATGTATTTTCTATTTGATTTGGCTGAGGAAATGAGTGCTTTTGTCTTACTTAAAAGAGGTATGAAAGTGGCTGGGACATTGCCAATCGAAATTACTAGGCTCTTCTCTATTCTCATCGGCTTGTTCCTCATTGACATTTTACAGAAAATGAGATTACTTGAAATAAAACATGGTTTGCTTCAACTAGCAGAGTCTTTAAACTTTCTTCATAGCAATGCACATCTCATTCACCGTGCTATATCTTCAGAGGTTTTGCCAGAATCCATTGGAGCAACGAAGCCATATTTGCGGCAATTCATTGATGTATAG

Protein sequence

MYFLFDLAEEMSAFVLLKRGMKVAGTLPIEITRLFSILIGLFLIDILQKMRLLEIKHGLLQLAESLNFLHSNAHLIHRAISSEVLPESIGATKPYLRQFIDV
Homology
[Close]
BLAST of MELO3C031985.2.1 vs. NCBI nr
Match: XP_016902463.1 (PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 [Cucumis melo] >XP_016902464.1 PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 [Cucumis melo] >XP_016902465.1 PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 [Cucumis melo] >XP_016902466.1 PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 [Cucumis melo] >XP_016902467.1 PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 [Cucumis melo] >XP_016902468.1 PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 [Cucumis melo] >XP_016902469.1 PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 [Cucumis melo] >XP_016902470.1 PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 1.0e-17
Identity = 53/68 (77.94%), Postives = 59/68 (86.76%), Query Frame = 0 

Query: 35  FSILIGLFLIDILQKMRLLEIKHGLLQLAESLNFLHSNAHLIHRAISSEVLPESIGATKP 94
           FSI + LF IDILQ+M LLEIK+GLLQLAESLNFLHSNA LIH  ISS+VLPESIGA K 
Sbjct: 55  FSIYVDLFFIDILQEMGLLEIKYGLLQLAESLNFLHSNARLIHCVISSKVLPESIGAVKS 114

Query: 95  YLRQFIDV 103
           YL+QFI+V
Sbjct: 115 YLQQFINV 122

[Close]
BLAST of MELO3C031985.2.1 vs. NCBI nr
Match: XP_022973369.1 (SCY1-like protein 2 isoform X3 [Cucurbita maxima])

HSP 1 Score: 69.3 bits (168), Expect = 8.5e-09
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 0 

Query: 41 LFLIDILQKMRLLEIKHGLLQLAESLNFLHSNAHLIHRAISSE-VLPESIGATK 94
          +FL+  L++M LLEIKHGLLQ+AESLNFLHSNAHLIHRAIS E VL  S GA K
Sbjct: 22 IFLLLFLKEMGLLEIKHGLLQIAESLNFLHSNAHLIHRAISPENVLITSNGAWK 75

[Close]
BLAST of MELO3C031985.2.1 vs. NCBI nr
Match: XP_022973367.1 (SCY1-like protein 2 isoform X1 [Cucurbita maxima])

HSP 1 Score: 69.3 bits (168), Expect = 8.5e-09
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 0 

Query: 41  LFLIDILQKMRLLEIKHGLLQLAESLNFLHSNAHLIHRAISSE-VLPESIGATK 94
           +FL+  L++M LLEIKHGLLQ+AESLNFLHSNAHLIHRAIS E VL  S GA K
Sbjct: 169 IFLLLFLKEMGLLEIKHGLLQIAESLNFLHSNAHLIHRAISPENVLITSNGAWK 222

[Close]
BLAST of MELO3C031985.2.1 vs. NCBI nr
Match: XP_023525407.1 (SCY1-like protein 2 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 69.3 bits (168), Expect = 8.5e-09
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 0 

Query: 41  LFLIDILQKMRLLEIKHGLLQLAESLNFLHSNAHLIHRAISSE-VLPESIGATK 94
           +FL+  L++M LLEIKHGLLQ+AESLNFLHSNAHLIHRAIS E VL  S GA K
Sbjct: 169 IFLLLFLKEMGLLEIKHGLLQIAESLNFLHSNAHLIHRAISPENVLITSNGAWK 222

[Close]
BLAST of MELO3C031985.2.1 vs. NCBI nr
Match: XP_023525409.1 (SCY1-like protein 2 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 69.3 bits (168), Expect = 8.5e-09
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 0 

Query: 41 LFLIDILQKMRLLEIKHGLLQLAESLNFLHSNAHLIHRAISSE-VLPESIGATK 94
          +FL+  L++M LLEIKHGLLQ+AESLNFLHSNAHLIHRAIS E VL  S GA K
Sbjct: 22 IFLLLFLKEMGLLEIKHGLLQIAESLNFLHSNAHLIHRAISPENVLITSNGAWK 75

[Close]
BLAST of MELO3C031985.2.1 vs. TAIR10
Match: AT1G22870.1 (Protein kinase family protein with ARM repeat domain)

HSP 1 Score: 60.8 bits (146), Expect = 5.5e-10
Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 0 

Query: 49  KMRLLEIKHGLLQLAESLNFLHSNAHLIHRAISSE-VLPESIGATK 94
           +M LLE+KHGLLQ+AE+LNFLH+NAHLIHRA+S E V   S G+ K
Sbjct: 165 EMSLLEVKHGLLQIAETLNFLHNNAHLIHRAVSPENVFITSAGSWK 210

[Close]
BLAST of MELO3C031985.2.1 vs. TAIR10
Match: AT1G71410.1 (ARM repeat superfamily protein)

HSP 1 Score: 58.9 bits (141), Expect = 2.1e-09
Identity = 31/46 (67.39%), Postives = 39/46 (84.78%), Query Frame = 0 

Query: 49  KMRLLEIKHGLLQLAESLNFLHSNAHLIHRAISSE-VLPESIGATK 94
           +M LLE+KHGLLQ++E+LNFLH+NA+LIHRAIS E VL  S G+ K
Sbjct: 165 EMSLLEVKHGLLQISETLNFLHNNANLIHRAISPENVLITSAGSWK 210

[Close]
BLAST of MELO3C031985.2.1 vs. TrEMBL
Match: tr|A0A1S4E2L5|A0A1S4E2L5_CUCME (putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 OS=Cucumis melo OX=3656 GN=LOC103498775 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 6.6e-18
Identity = 53/68 (77.94%), Postives = 59/68 (86.76%), Query Frame = 0 

Query: 35  FSILIGLFLIDILQKMRLLEIKHGLLQLAESLNFLHSNAHLIHRAISSEVLPESIGATKP 94
           FSI + LF IDILQ+M LLEIK+GLLQLAESLNFLHSNA LIH  ISS+VLPESIGA K 
Sbjct: 55  FSIYVDLFFIDILQEMGLLEIKYGLLQLAESLNFLHSNARLIHCVISSKVLPESIGAVKS 114

Query: 95  YLRQFIDV 103
           YL+QFI+V
Sbjct: 115 YLQQFINV 122

[Close]
BLAST of MELO3C031985.2.1 vs. TrEMBL
Match: tr|A0A1S3CAL7|A0A1S3CAL7_CUCME (SCY1-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103498664 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.7e-08
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 0 

Query: 49  KMRLLEIKHGLLQLAESLNFLHSNAHLIHRAISSE-VLPESIGATK 94
           +M LLEIKHGLLQLAESLNFLHSNAHLIHRAIS E VL  S GA K
Sbjct: 165 EMGLLEIKHGLLQLAESLNFLHSNAHLIHRAISPENVLITSNGAWK 210

[Close]
BLAST of MELO3C031985.2.1 vs. TrEMBL
Match: tr|A0A0A0KSU8|A0A0A0KSU8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G648740 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.7e-08
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 0 

Query: 49  KMRLLEIKHGLLQLAESLNFLHSNAHLIHRAISSE-VLPESIGATK 94
           +M LLEIKHGLLQLAESLNFLHSNAHLIHRAIS E VL  S GA K
Sbjct: 165 EMGLLEIKHGLLQLAESLNFLHSNAHLIHRAISPENVLITSNGAWK 210

[Close]
BLAST of MELO3C031985.2.1 vs. TrEMBL
Match: tr|A0A1J3JLI2|A0A1J3JLI2_NOCCA (SCY1-like protein 2 (Fragment) OS=Noccaea caerulescens OX=107243 GN=MP_TR13124_c3_g1_i1_g.38352 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-07
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 49  KMRLLEIKHGLLQLAESLNFLHSNAHLIHRAISSE-VLPESIGATK 94
           +MRLLE+KHGLLQ+AE+LNFLH+NAHLIHRA+S E VL  S G+ K
Sbjct: 237 EMRLLEVKHGLLQIAETLNFLHNNAHLIHRAVSPENVLITSAGSWK 282

[Close]
BLAST of MELO3C031985.2.1 vs. TrEMBL
Match: tr|A0A1J3IBQ6|A0A1J3IBQ6_NOCCA (SCY1-like protein 2 (Fragment) OS=Noccaea caerulescens OX=107243 GN=LE_TR16804_c1_g1_i1_g.53685 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-07
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 49  KMRLLEIKHGLLQLAESLNFLHSNAHLIHRAISSE-VLPESIGATK 94
           +MRLLE+KHGLLQ+AE+LNFLH+NAHLIHRA+S E VL  S G+ K
Sbjct: 248 EMRLLEVKHGLLQIAETLNFLHNNAHLIHRAVSPENVLITSAGSWK 293

The following BLAST results are available for this feature:
BLAST of MELO3C031985.2.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016902463.11.0e-1777.94PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09... [more]
XP_022973369.18.5e-0974.07SCY1-like protein 2 isoform X3 [Cucurbita maxima][more]
XP_022973367.18.5e-0974.07SCY1-like protein 2 isoform X1 [Cucurbita maxima][more]
XP_023525407.18.5e-0974.07SCY1-like protein 2 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_023525409.18.5e-0974.07SCY1-like protein 2 isoform X3 [Cucurbita pepo subsp. pepo][more]
BLAST of MELO3C031985.2.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G22870.15.5e-1067.39Protein kinase family protein with ARM repeat domain[more]
AT1G71410.12.1e-0967.39ARM repeat superfamily protein[more]
BLAST of MELO3C031985.2.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C031985.2.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E2L5|A0A1S4E2L5_CUCME6.6e-1877.94putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 OS=Cucumis... [more]
tr|A0A1S3CAL7|A0A1S3CAL7_CUCME4.7e-0882.61SCY1-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103498664 PE=4 SV=1[more]
tr|A0A0A0KSU8|A0A0A0KSU8_CUCSA4.7e-0882.61Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G648740 PE=4 SV=1[more]
tr|A0A1J3JLI2|A0A1J3JLI2_NOCCA1.4e-0771.74SCY1-like protein 2 (Fragment) OS=Noccaea caerulescens OX=107243 GN=MP_TR13124_c... [more]
tr|A0A1J3IBQ6|A0A1J3IBQ6_NOCCA1.4e-0771.74SCY1-like protein 2 (Fragment) OS=Noccaea caerulescens OX=107243 GN=LE_TR16804_c... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C031985.2MELO3C031985.2gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C031985.2.1MELO3C031985.2.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C031985.2.1.exon.1MELO3C031985.2.1.exon.1exon
MELO3C031985.2.1.exon.2MELO3C031985.2.1.exon.2exon
MELO3C031985.2.1.exon.3MELO3C031985.2.1.exon.3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C031985.2.1.CDS.1MELO3C031985.2.1.CDS.1CDS
MELO3C031985.2.1.CDS.2MELO3C031985.2.1.CDS.2CDS
MELO3C031985.2.1.CDS.3MELO3C031985.2.1.CDS.3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C031985.2.1.three_prime_UTR.1MELO3C031985.2.1.three_prime_UTR.1three_prime_UTR