MELO3C031985.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C031985.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionSCY1-like protein 2
Locationchr06 : 12511820 .. 12513685 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATTTTCTATTTGATTTGGCTGAGGAAATGAGTGCTTTTGTCTTACTTAAAAGAGGTATGAAAGTGGCTGGGACATTGCCAATCGAAATTACTAGGCTGTAAGTTTTGTTAACATAATTTTGTTTTACTATTTATGATTGTCATATTTTGCCCTTAATTCTACTATTCAATACAATTTCTTGTAATTAGTTTTTGTTGTATGCTAGCAAGATATATCATTTGGAGTGGTTAGAAAATCTTTGGAGTGTCGTATTACAGTGTGCATTGAAATACGACGTATAACATTGCCCTAAATTTATGTTATTGGGTTTTAGCATTTTAGTTGAATTTAATTAGGTTTTTGAATTAATGAGTTTGGATAGAATGCTTCTTGGGGTATTGGGACATTCCGATCTTTGATGTAGAAAGTTGGGACATTAGTTGTAAAAAGTGGTAAAAATTTCTGTTGTTTTGAGTAGTTTTGGGTTGCTATTATTTGAAAGTTGATTAATAATGTTTTAAGATTAGGAAATGGAATATTAGACCGAGTTTTTTTTTACACTAATTGTGGTAAAGAACATGGAACTGAACCCGATGTTGTTCCAATCTAAAGGAGAAAATCAACAAGTGTTTATATTTATCTTGGTTGAAAATTGCTTCTTGTTTCGGATGCGAATGCTCAACTTGAAATCTGATTTGTAGGGTGAATTGGGGAGTTGAAGTTTCAATTGATTTAAATTTGCTTCCATGTGGTGGAATGTTATGGATCAAATATTTTTTTTTTTTTTTTTTTGTTTGCTTCATTTGCTTCTCATTTTTTTCGTTTTTCGATCTCGGTTTATTATTTTTGGATTTTATTAAGTTTTTTTGGGGGTTTTATTTATTTCTTGGTTGCTTTCTTCAAATTAACTTGATAAATTTACTGCATCTATAACTGTTAGCCTGGTTGTAGGGTTGTCATTTGTAAATGTAAATGTTTTGTGGAAGTGTTTTAGATGAAAACATTTTTAGTATTTCTGATAAGTTTGTTGGAAAATTCTGTTTATAGACCTTTTCATTCGTTAATTTTTTTTTAGAAAATGAATTCTGACTTTTTTATATATTTTTTTTTTTTTATACTTCTCATATGTGTCATACTTATGATTTTTTTTTTTTTGTTTGGATCACTAATCATGTGATGCTTGTAGTTTTCATAAAAGCTTCTCTATTCTCATCGGCTTGTTCCTCATTGACATTTTACAGAAAATGAGATTACTTGAAATAAAACATGGTTTGCTTCAACTAGCAGAGTCTTTAAACTTTCTTCATAGCAATGCACATCTCATTCACCGTGCTATATCTTCAGAGGTATCAATTTTATTTCAACGTTTTTTTTCTAGTAGTTTAAAACTTTTTATTAAGTTTTTTTGGGAGTATTTGGAGTTTTTTCTAGTGCTTCATTTGAGAACTGAAGTGTTGAATGATACAAACACCATACAAATGGAGTTTTGTTGATGTATTGAAGCAGGAGAAATTTATGCGGTAAGGAAGGCGTTTTGTATTATAATATATAAATCATAATATAGTAGGTGTTTATGGATCATGCGTGTGTTTTCTGTACGCGTTTTGTATTTATGTGTTGCCTGTAATATATTTTGTTTTGGACTTTGTGTGAAGTTTTGTAATTCATTTAGCTGAGTTTGTGTGTTGTATTGTTGAATCAATTTTGTTTCATTTTATTTTCTTACTAGGTTTTGCCAGAATCCATTGGAGCAACGAAGCCATATTTGCGGCAATTCATTGATGTATAGGCATTTTTGTAGGTTTGATAGGAAAATTTCTGGTTTAAGTGTAGTTCTTTAAATAGCTTGTTCGTAACAAACCATATAATAGTGCACGAAAAAC

mRNA sequence

ATGTATTTTCTATTTGATTTGGCTGAGGAAATGAGTGCTTTTGTCTTACTTAAAAGAGGTATGAAAGTGGCTGGGACATTGCCAATCGAAATTACTAGGCTCTTCTCTATTCTCATCGGCTTGTTCCTCATTGACATTTTACAGAAAATGAGATTACTTGAAATAAAACATGGTTTGCTTCAACTAGCAGAGTCTTTAAACTTTCTTCATAGCAATGCACATCTCATTCACCGTGCTATATCTTCAGAGGTTTTGCCAGAATCCATTGGAGCAACGAAGCCATATTTGCGGCAATTCATTGATGTATAGGCATTTTTGTAGGTTTGATAGGAAAATTTCTGGTTTAAGTGTAGTTCTTTAAATAGCTTGTTCGTAACAAACCATATAATAGTGCACGAAAAAC

Coding sequence (CDS)

ATGTATTTTCTATTTGATTTGGCTGAGGAAATGAGTGCTTTTGTCTTACTTAAAAGAGGTATGAAAGTGGCTGGGACATTGCCAATCGAAATTACTAGGCTCTTCTCTATTCTCATCGGCTTGTTCCTCATTGACATTTTACAGAAAATGAGATTACTTGAAATAAAACATGGTTTGCTTCAACTAGCAGAGTCTTTAAACTTTCTTCATAGCAATGCACATCTCATTCACCGTGCTATATCTTCAGAGGTTTTGCCAGAATCCATTGGAGCAACGAAGCCATATTTGCGGCAATTCATTGATGTATAG

Protein sequence

MYFLFDLAEEMSAFVLLKRGMKVAGTLPIEITRLFSILIGLFLIDILQKMRLLEIKHGLLQLAESLNFLHSNAHLIHRAISSEVLPESIGATKPYLRQFIDV
Homology
[Close]
BLAST of MELO3C031985.2 vs. NCBI nr
Match: XP_016902463.1 (PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 [Cucumis melo] >XP_016902464.1 PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 [Cucumis melo] >XP_016902465.1 PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 [Cucumis melo] >XP_016902466.1 PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 [Cucumis melo] >XP_016902467.1 PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 [Cucumis melo] >XP_016902468.1 PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 [Cucumis melo] >XP_016902469.1 PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 [Cucumis melo] >XP_016902470.1 PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 1.0e-17
Identity = 53/68 (77.94%), Postives = 59/68 (86.76%), Query Frame = 0 

Query: 35  FSILIGLFLIDILQKMRLLEIKHGLLQLAESLNFLHSNAHLIHRAISSEVLPESIGATKP 94
           FSI + LF IDILQ+M LLEIK+GLLQLAESLNFLHSNA LIH  ISS+VLPESIGA K 
Sbjct: 55  FSIYVDLFFIDILQEMGLLEIKYGLLQLAESLNFLHSNARLIHCVISSKVLPESIGAVKS 114

Query: 95  YLRQFIDV 103
           YL+QFI+V
Sbjct: 115 YLQQFINV 122

[Close]
BLAST of MELO3C031985.2 vs. NCBI nr
Match: XP_022973369.1 (SCY1-like protein 2 isoform X3 [Cucurbita maxima])

HSP 1 Score: 69.3 bits (168), Expect = 8.5e-09
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 0 

Query: 41 LFLIDILQKMRLLEIKHGLLQLAESLNFLHSNAHLIHRAISSE-VLPESIGATK 94
          +FL+  L++M LLEIKHGLLQ+AESLNFLHSNAHLIHRAIS E VL  S GA K
Sbjct: 22 IFLLLFLKEMGLLEIKHGLLQIAESLNFLHSNAHLIHRAISPENVLITSNGAWK 75

[Close]
BLAST of MELO3C031985.2 vs. NCBI nr
Match: XP_022973367.1 (SCY1-like protein 2 isoform X1 [Cucurbita maxima])

HSP 1 Score: 69.3 bits (168), Expect = 8.5e-09
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 0 

Query: 41  LFLIDILQKMRLLEIKHGLLQLAESLNFLHSNAHLIHRAISSE-VLPESIGATK 94
           +FL+  L++M LLEIKHGLLQ+AESLNFLHSNAHLIHRAIS E VL  S GA K
Sbjct: 169 IFLLLFLKEMGLLEIKHGLLQIAESLNFLHSNAHLIHRAISPENVLITSNGAWK 222

[Close]
BLAST of MELO3C031985.2 vs. NCBI nr
Match: XP_023525407.1 (SCY1-like protein 2 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 69.3 bits (168), Expect = 8.5e-09
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 0 

Query: 41  LFLIDILQKMRLLEIKHGLLQLAESLNFLHSNAHLIHRAISSE-VLPESIGATK 94
           +FL+  L++M LLEIKHGLLQ+AESLNFLHSNAHLIHRAIS E VL  S GA K
Sbjct: 169 IFLLLFLKEMGLLEIKHGLLQIAESLNFLHSNAHLIHRAISPENVLITSNGAWK 222

[Close]
BLAST of MELO3C031985.2 vs. NCBI nr
Match: XP_023525409.1 (SCY1-like protein 2 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 69.3 bits (168), Expect = 8.5e-09
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 0 

Query: 41 LFLIDILQKMRLLEIKHGLLQLAESLNFLHSNAHLIHRAISSE-VLPESIGATK 94
          +FL+  L++M LLEIKHGLLQ+AESLNFLHSNAHLIHRAIS E VL  S GA K
Sbjct: 22 IFLLLFLKEMGLLEIKHGLLQIAESLNFLHSNAHLIHRAISPENVLITSNGAWK 75

[Close]
BLAST of MELO3C031985.2 vs. TAIR10
Match: AT1G22870.1 (Protein kinase family protein with ARM repeat domain)

HSP 1 Score: 60.8 bits (146), Expect = 5.5e-10
Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 0 

Query: 49  KMRLLEIKHGLLQLAESLNFLHSNAHLIHRAISSE-VLPESIGATK 94
           +M LLE+KHGLLQ+AE+LNFLH+NAHLIHRA+S E V   S G+ K
Sbjct: 165 EMSLLEVKHGLLQIAETLNFLHNNAHLIHRAVSPENVFITSAGSWK 210

[Close]
BLAST of MELO3C031985.2 vs. TAIR10
Match: AT1G71410.1 (ARM repeat superfamily protein)

HSP 1 Score: 58.9 bits (141), Expect = 2.1e-09
Identity = 31/46 (67.39%), Postives = 39/46 (84.78%), Query Frame = 0 

Query: 49  KMRLLEIKHGLLQLAESLNFLHSNAHLIHRAISSE-VLPESIGATK 94
           +M LLE+KHGLLQ++E+LNFLH+NA+LIHRAIS E VL  S G+ K
Sbjct: 165 EMSLLEVKHGLLQISETLNFLHNNANLIHRAISPENVLITSAGSWK 210

[Close]
BLAST of MELO3C031985.2 vs. TrEMBL
Match: tr|A0A1S4E2L5|A0A1S4E2L5_CUCME (putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 OS=Cucumis melo OX=3656 GN=LOC103498775 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 6.6e-18
Identity = 53/68 (77.94%), Postives = 59/68 (86.76%), Query Frame = 0 

Query: 35  FSILIGLFLIDILQKMRLLEIKHGLLQLAESLNFLHSNAHLIHRAISSEVLPESIGATKP 94
           FSI + LF IDILQ+M LLEIK+GLLQLAESLNFLHSNA LIH  ISS+VLPESIGA K 
Sbjct: 55  FSIYVDLFFIDILQEMGLLEIKYGLLQLAESLNFLHSNARLIHCVISSKVLPESIGAVKS 114

Query: 95  YLRQFIDV 103
           YL+QFI+V
Sbjct: 115 YLQQFINV 122

[Close]
BLAST of MELO3C031985.2 vs. TrEMBL
Match: tr|A0A1S3CAL7|A0A1S3CAL7_CUCME (SCY1-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103498664 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.7e-08
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 0 

Query: 49  KMRLLEIKHGLLQLAESLNFLHSNAHLIHRAISSE-VLPESIGATK 94
           +M LLEIKHGLLQLAESLNFLHSNAHLIHRAIS E VL  S GA K
Sbjct: 165 EMGLLEIKHGLLQLAESLNFLHSNAHLIHRAISPENVLITSNGAWK 210

[Close]
BLAST of MELO3C031985.2 vs. TrEMBL
Match: tr|A0A0A0KSU8|A0A0A0KSU8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G648740 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.7e-08
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 0 

Query: 49  KMRLLEIKHGLLQLAESLNFLHSNAHLIHRAISSE-VLPESIGATK 94
           +M LLEIKHGLLQLAESLNFLHSNAHLIHRAIS E VL  S GA K
Sbjct: 165 EMGLLEIKHGLLQLAESLNFLHSNAHLIHRAISPENVLITSNGAWK 210

[Close]
BLAST of MELO3C031985.2 vs. TrEMBL
Match: tr|A0A1J3JLI2|A0A1J3JLI2_NOCCA (SCY1-like protein 2 (Fragment) OS=Noccaea caerulescens OX=107243 GN=MP_TR13124_c3_g1_i1_g.38352 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-07
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 49  KMRLLEIKHGLLQLAESLNFLHSNAHLIHRAISSE-VLPESIGATK 94
           +MRLLE+KHGLLQ+AE+LNFLH+NAHLIHRA+S E VL  S G+ K
Sbjct: 237 EMRLLEVKHGLLQIAETLNFLHNNAHLIHRAVSPENVLITSAGSWK 282

[Close]
BLAST of MELO3C031985.2 vs. TrEMBL
Match: tr|A0A1J3IBQ6|A0A1J3IBQ6_NOCCA (SCY1-like protein 2 (Fragment) OS=Noccaea caerulescens OX=107243 GN=LE_TR16804_c1_g1_i1_g.53685 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-07
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 49  KMRLLEIKHGLLQLAESLNFLHSNAHLIHRAISSE-VLPESIGATK 94
           +MRLLE+KHGLLQ+AE+LNFLH+NAHLIHRA+S E VL  S G+ K
Sbjct: 248 EMRLLEVKHGLLQIAETLNFLHNNAHLIHRAVSPENVLITSAGSWK 293

The following BLAST results are available for this feature:
BLAST of MELO3C031985.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016902463.11.0e-1777.94PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09... [more]
XP_022973369.18.5e-0974.07SCY1-like protein 2 isoform X3 [Cucurbita maxima][more]
XP_022973367.18.5e-0974.07SCY1-like protein 2 isoform X1 [Cucurbita maxima][more]
XP_023525407.18.5e-0974.07SCY1-like protein 2 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_023525409.18.5e-0974.07SCY1-like protein 2 isoform X3 [Cucurbita pepo subsp. pepo][more]
BLAST of MELO3C031985.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G22870.15.5e-1067.39Protein kinase family protein with ARM repeat domain[more]
AT1G71410.12.1e-0967.39ARM repeat superfamily protein[more]
BLAST of MELO3C031985.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C031985.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E2L5|A0A1S4E2L5_CUCME6.6e-1877.94putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 OS=Cucumis... [more]
tr|A0A1S3CAL7|A0A1S3CAL7_CUCME4.7e-0882.61SCY1-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103498664 PE=4 SV=1[more]
tr|A0A0A0KSU8|A0A0A0KSU8_CUCSA4.7e-0882.61Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G648740 PE=4 SV=1[more]
tr|A0A1J3JLI2|A0A1J3JLI2_NOCCA1.4e-0771.74SCY1-like protein 2 (Fragment) OS=Noccaea caerulescens OX=107243 GN=MP_TR13124_c... [more]
tr|A0A1J3IBQ6|A0A1J3IBQ6_NOCCA1.4e-0771.74SCY1-like protein 2 (Fragment) OS=Noccaea caerulescens OX=107243 GN=LE_TR16804_c... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031985.2.1MELO3C031985.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C031985.2Cucumber (Gy14) v2cgybmedB215
MELO3C031985.2Cucumber (Gy14) v2cgybmedB492
MELO3C031985.2Cucumber (Gy14) v1cgymedB379
MELO3C031985.2Cucumber (Gy14) v1cgymedB412
MELO3C031985.2Cucurbita maxima (Rimu)cmamedB151
MELO3C031985.2Cucurbita maxima (Rimu)cmamedB346
MELO3C031985.2Cucurbita maxima (Rimu)cmamedB560
MELO3C031985.2Cucurbita maxima (Rimu)cmamedB777
MELO3C031985.2Cucurbita moschata (Rifu)cmomedB139
MELO3C031985.2Cucurbita moschata (Rifu)cmomedB332
MELO3C031985.2Cucurbita moschata (Rifu)cmomedB547
MELO3C031985.2Cucurbita moschata (Rifu)cmomedB774
MELO3C031985.2Cucurbita pepo (Zucchini)cpemedB234
MELO3C031985.2Cucurbita pepo (Zucchini)cpemedB481
MELO3C031985.2Cucurbita pepo (Zucchini)cpemedB764
MELO3C031985.2Wild cucumber (PI 183967)cpimedB239
MELO3C031985.2Wild cucumber (PI 183967)cpimedB552
MELO3C031985.2Cucumber (Chinese Long) v2cumedB238
MELO3C031985.2Cucumber (Chinese Long) v2cumedB534
MELO3C031985.2Melon (DHL92) v3.6.1medmedB091
MELO3C031985.2Bottle gourd (USVL1VR-Ls)lsimedB280
MELO3C031985.2Bottle gourd (USVL1VR-Ls)lsimedB384
MELO3C031985.2Watermelon (Charleston Gray)medwcgB413
MELO3C031985.2Watermelon (Charleston Gray)medwcgB417
MELO3C031985.2Watermelon (97103) v1medwmB448
MELO3C031985.2Watermelon (97103) v1medwmB472
MELO3C031985.2Silver-seed gourdcarmedB0307
MELO3C031985.2Silver-seed gourdcarmedB0384
MELO3C031985.2Cucumber (Chinese Long) v3cucmedB246
MELO3C031985.2Cucumber (Chinese Long) v3cucmedB566
MELO3C031985.2Watermelon (97103) v2medwmbB421
MELO3C031985.2Watermelon (97103) v2medwmbB424
MELO3C031985.2Wax gourdmedwgoB531
MELO3C031985.2Wax gourdmedwgoB558