MELO3C031891.2.1 (mRNA) Melon (DHL92) v3.6.1

Overview
NameMELO3C031891.2.1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionCyclic nucleotide-gated ion channel 1
Locationchr06 : 9827886 .. 9829270 (-)
Sequence length243
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCTCTCAATGCATTTCTCCCAACACGCTTCTCGATGTCACTTTCTGCATCGGGAAATCAATTCCTAATGTATTTCAAGCCTACTCTAACACTTTAATGCAACGAGAATACCCTAACTTGTTATAGTGGCAAATAGGAGGAGAAGAAAATTAGACTTAAAGATCCAAGTTTTAGATTATGTTAATATGTTAAGTTCTCTTGAGGACTACGTGCATTAAGGTTTGAAACTCTTCCTTTCAACACATCTCTTTTTGTTCTTCATTTTAATGGCTATTACTTTGATCATCAATTATTGGTGTAAGTTTATGGTTTTTATGAGGATATAGGCTTCAACTCAGCTTAGAACTAGATCAAACGGTCATCTGAGTTTACAAGCTTAATGATTTCCTTTGTATGTGTTGGTCTTCATCATCGAAACATAGTCTGAGCAAATAGAGGGAGAAGAAAATTAGACTTAAAGATCCAAGTTTGAGATTATGTTGATTTATTTAAGTTTTCTCAACTTCTAACCTCACCCCCTCCCCATGAGACACCACCAAGCCATGTGGTTATAATATTCTCGAGTATGTTTGAAGTAACTTTTGAAGATAGCATTTTTAAATCATAACTCGAATTAACTCTTGTTTGTTGAAATTATGAGATCACTTTTCAACTTCCAAAACTCTCATCTGGTACAAATAACTTCCTAGTTTATAAGATAATGAAATGTGATAGTATCATCTCATGTTTGATCAAATGCAATTTACAGCTCATTTTGGGTCAAACTTGACTCCAAATAGCTATTCATCCGAAAACATCTTTGCGGCTCTCATTACCATCGTTGGGATACTCTAGTTGTTTATCTTATTAGCAACTTGCAGGTTTGTTAAAGATCTTCTCATCCAATATGTCAACTTCTCCTTTTCTAAATCAGTAACAAAGAAATGGTTGCATCATTAAACAGGTATATCTACAGTCCTCAACTTTATGATCAGAGGAGAAACAGAGGAAAATGCAAAAGAAAGATGTTGAAACAGATTTATGGATAGATTATTATAACTTCCAGAAGAAGAAGGAAATCAAGGAGTTTATGAGAGACAAGTTTGAGTGAAAAATGATGTCAATTTGAAAACACTGCTCAATCTGTTTCCGTGTCTCCATTCATTGAGGAGATAAAGAAACAACTTTGCTGGGATATCCTAAAGAGGGTGAGTTTTGCTCTGTATATTTGTGAAGTAAATTGTTAAAATAGAAACAAACGACCTTGATCAATGTTTCCTTGGCAGGTTCCAATGCTTAAAGAATTTGAAGATGAGAAGTTAAAAGAGATGATGAAGGATATGAAGCCAATGGTTTTTGGAGAGCAGAGCTATATTATTCAAGAGGGGGAACCTGTTGAATAG

mRNA sequence

ATGGTCTCTCAATGCATTTCTCCCAACACGCTTCTCGATGTCACTTTCTGCATCGGGAAATCAATTCCTAATTTTTCTCAACTTCTAACCTCACCCCCTCCCCATGAGACACCACCAAGCCATGTGGTTCCAATGCTTAAAGAATTTGAAGATGAGAAGTTAAAAGAGATGATGAAGGATATGAAGCCAATGGTTTTTGGAGAGCAGAGCTATATTATTCAAGAGGGGGAACCTGTTGAATAG

Coding sequence (CDS)

ATGGTCTCTCAATGCATTTCTCCCAACACGCTTCTCGATGTCACTTTCTGCATCGGGAAATCAATTCCTAATTTTTCTCAACTTCTAACCTCACCCCCTCCCCATGAGACACCACCAAGCCATGTGGTTCCAATGCTTAAAGAATTTGAAGATGAGAAGTTAAAAGAGATGATGAAGGATATGAAGCCAATGGTTTTTGGAGAGCAGAGCTATATTATTCAAGAGGGGGAACCTGTTGAATAG

Protein sequence

MVSQCISPNTLLDVTFCIGKSIPNFSQLLTSPPPHETPPSHVVPMLKEFEDEKLKEMMKDMKPMVFGEQSYIIQEGEPVE
Homology
[Close]
BLAST of MELO3C031891.2.1 vs. NCBI nr
Match: XP_008449547.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 2.3e-09
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 43  VPMLKEFEDEKLKEMMKDMKPMVFGEQSYIIQEGEPVE 81
           V MLKEFE+EKLKEMMKDMKPMVFGEQSYII+EGEPVE
Sbjct: 415 VLMLKEFEEEKLKEMMKDMKPMVFGEQSYIIREGEPVE 452

[Close]
BLAST of MELO3C031891.2.1 vs. NCBI nr
Match: XP_016900693.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 2.3e-09
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 43  VPMLKEFEDEKLKEMMKDMKPMVFGEQSYIIQEGEPVE 81
           V MLKEFE+EKLKEMMKDMKPMVFGEQSYII+EGEPVE
Sbjct: 411 VLMLKEFEEEKLKEMMKDMKPMVFGEQSYIIREGEPVE 448

[Close]
BLAST of MELO3C031891.2.1 vs. NCBI nr
Match: XP_016900694.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X3 [Cucumis melo] >XP_016900695.1 PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X3 [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 2.3e-09
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 43  VPMLKEFEDEKLKEMMKDMKPMVFGEQSYIIQEGEPVE 81
           V MLKEFE+EKLKEMMKDMKPMVFGEQSYII+EGEPVE
Sbjct: 308 VLMLKEFEEEKLKEMMKDMKPMVFGEQSYIIREGEPVE 345

[Close]
BLAST of MELO3C031891.2.1 vs. NCBI nr
Match: XP_011651603.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-08
Identity = 31/38 (81.58%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 43  VPMLKEFEDEKLKEMMKDMKPMVFGEQSYIIQEGEPVE 81
           VPMLKEFE+EKL+EMMKDMKP++F EQSYII+EGEP+E
Sbjct: 418 VPMLKEFEEEKLEEMMKDMKPIIFAEQSYIIREGEPIE 455

[Close]
BLAST of MELO3C031891.2.1 vs. NCBI nr
Match: XP_011651604.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-08
Identity = 31/38 (81.58%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 43  VPMLKEFEDEKLKEMMKDMKPMVFGEQSYIIQEGEPVE 81
           VPMLKEFE+EKL+EMMKDMKP++F EQSYII+EGEP+E
Sbjct: 306 VPMLKEFEEEKLEEMMKDMKPIIFAEQSYIIREGEPIE 343

[Close]
BLAST of MELO3C031891.2.1 vs. TrEMBL
Match: tr|A0A1S4DYA3|A0A1S4DYA3_CUCME (cyclic nucleotide-gated ion channel 1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103491398 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-09
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 43  VPMLKEFEDEKLKEMMKDMKPMVFGEQSYIIQEGEPVE 81
           V MLKEFE+EKLKEMMKDMKPMVFGEQSYII+EGEPVE
Sbjct: 308 VLMLKEFEEEKLKEMMKDMKPMVFGEQSYIIREGEPVE 345

[Close]
BLAST of MELO3C031891.2.1 vs. TrEMBL
Match: tr|A0A1S3BLM4|A0A1S3BLM4_CUCME (cyclic nucleotide-gated ion channel 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491398 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-09
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 43  VPMLKEFEDEKLKEMMKDMKPMVFGEQSYIIQEGEPVE 81
           V MLKEFE+EKLKEMMKDMKPMVFGEQSYII+EGEPVE
Sbjct: 415 VLMLKEFEEEKLKEMMKDMKPMVFGEQSYIIREGEPVE 452

[Close]
BLAST of MELO3C031891.2.1 vs. TrEMBL
Match: tr|A0A1S4DXJ0|A0A1S4DXJ0_CUCME (cyclic nucleotide-gated ion channel 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491398 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-09
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 43  VPMLKEFEDEKLKEMMKDMKPMVFGEQSYIIQEGEPVE 81
           V MLKEFE+EKLKEMMKDMKPMVFGEQSYII+EGEPVE
Sbjct: 411 VLMLKEFEEEKLKEMMKDMKPMVFGEQSYIIREGEPVE 448

[Close]
BLAST of MELO3C031891.2.1 vs. TrEMBL
Match: tr|A0A0A0LBE9|A0A0A0LBE9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G606870 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-06
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 43  VPMLKEFEDEKLKEMMKDMKPMVFGEQSYIIQEGEPVE 81
           VPMLKEFE+EKL+EMMKDMK M+F E +YIIQEGE VE
Sbjct: 251 VPMLKEFEEEKLEEMMKDMKLMIFAEHNYIIQEGELVE 288

The following BLAST results are available for this feature:
BLAST of MELO3C031891.2.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008449547.12.3e-0992.11PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis melo][more]
XP_016900693.12.3e-0992.11PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis melo][more]
XP_016900694.12.3e-0992.11PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X3 [Cucumis melo] ... [more]
XP_011651603.11.1e-0881.58PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis sativu... [more]
XP_011651604.11.1e-0881.58PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis sativu... [more]
BLAST of MELO3C031891.2.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C031891.2.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C031891.2.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DYA3|A0A1S4DYA3_CUCME1.5e-0992.11cyclic nucleotide-gated ion channel 1-like isoform X3 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A1S3BLM4|A0A1S3BLM4_CUCME1.5e-0992.11cyclic nucleotide-gated ion channel 1-like isoform X1 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A1S4DXJ0|A0A1S4DXJ0_CUCME1.5e-0992.11cyclic nucleotide-gated ion channel 1-like isoform X2 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A0A0LBE9|A0A0A0LBE9_CUCSA1.2e-0678.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G606870 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000595cNMP-bd_dom
IPR014710RmlC-like_jellyroll
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034220 ion transmembrane transport
biological_process GO:0006811 ion transport
biological_process GO:0055085 transmembrane transport
biological_process GO:0006810 transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0005216 ion channel activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C031891.2MELO3C031891.2gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C031891.2.1MELO3C031891.2.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C031891.2.1.exon.3MELO3C031891.2.1.exon.3exon
MELO3C031891.2.1.exon.2MELO3C031891.2.1.exon.2exon
MELO3C031891.2.1.exon.1MELO3C031891.2.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C031891.2.1.CDS.3MELO3C031891.2.1.CDS.3CDS
MELO3C031891.2.1.CDS.2MELO3C031891.2.1.CDS.2CDS
MELO3C031891.2.1.CDS.1MELO3C031891.2.1.CDS.1CDS


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014710RmlC-like jelly roll foldGENE3DG3DSA:2.60.120.10coord: 43..80
e-value: 1.5E-6
score: 30.0
IPR000595Cyclic nucleotide-binding domainPROSITEPS50042CNMP_BINDING_3coord: 45..80
score: 7.499