MELO3C031891.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C031891.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionCyclic nucleotide-gated ion channel 1
Locationchr06 : 9827886 .. 9829270 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCTCTCAATGCATTTCTCCCAACACGCTTCTCGATGTCACTTTCTGCATCGGGAAATCAATTCCTAATGTATTTCAAGCCTACTCTAACACTTTAATGCAACGAGAATACCCTAACTTGTTATAGTGGCAAATAGGAGGAGAAGAAAATTAGACTTAAAGATCCAAGTTTTAGATTATGTTAATATGTTAAGTTCTCTTGAGGACTACGTGCATTAAGGTTTGAAACTCTTCCTTTCAACACATCTCTTTTTGTTCTTCATTTTAATGGCTATTACTTTGATCATCAATTATTGGTGTAAGTTTATGGTTTTTATGAGGATATAGGCTTCAACTCAGCTTAGAACTAGATCAAACGGTCATCTGAGTTTACAAGCTTAATGATTTCCTTTGTATGTGTTGGTCTTCATCATCGAAACATAGTCTGAGCAAATAGAGGGAGAAGAAAATTAGACTTAAAGATCCAAGTTTGAGATTATGTTGATTTATTTAAGTTTTCTCAACTTCTAACCTCACCCCCTCCCCATGAGACACCACCAAGCCATGTGGTTATAATATTCTCGAGTATGTTTGAAGTAACTTTTGAAGATAGCATTTTTAAATCATAACTCGAATTAACTCTTGTTTGTTGAAATTATGAGATCACTTTTCAACTTCCAAAACTCTCATCTGGTACAAATAACTTCCTAGTTTATAAGATAATGAAATGTGATAGTATCATCTCATGTTTGATCAAATGCAATTTACAGCTCATTTTGGGTCAAACTTGACTCCAAATAGCTATTCATCCGAAAACATCTTTGCGGCTCTCATTACCATCGTTGGGATACTCTAGTTGTTTATCTTATTAGCAACTTGCAGGTTTGTTAAAGATCTTCTCATCCAATATGTCAACTTCTCCTTTTCTAAATCAGTAACAAAGAAATGGTTGCATCATTAAACAGGTATATCTACAGTCCTCAACTTTATGATCAGAGGAGAAACAGAGGAAAATGCAAAAGAAAGATGTTGAAACAGATTTATGGATAGATTATTATAACTTCCAGAAGAAGAAGGAAATCAAGGAGTTTATGAGAGACAAGTTTGAGTGAAAAATGATGTCAATTTGAAAACACTGCTCAATCTGTTTCCGTGTCTCCATTCATTGAGGAGATAAAGAAACAACTTTGCTGGGATATCCTAAAGAGGGTGAGTTTTGCTCTGTATATTTGTGAAGTAAATTGTTAAAATAGAAACAAACGACCTTGATCAATGTTTCCTTGGCAGGTTCCAATGCTTAAAGAATTTGAAGATGAGAAGTTAAAAGAGATGATGAAGGATATGAAGCCAATGGTTTTTGGAGAGCAGAGCTATATTATTCAAGAGGGGGAACCTGTTGAATAG

mRNA sequence

ATGGTCTCTCAATGCATTTCTCCCAACACGCTTCTCGATGTCACTTTCTGCATCGGGAAATCAATTCCTAATTTTTCTCAACTTCTAACCTCACCCCCTCCCCATGAGACACCACCAAGCCATGTGGTTCCAATGCTTAAAGAATTTGAAGATGAGAAGTTAAAAGAGATGATGAAGGATATGAAGCCAATGGTTTTTGGAGAGCAGAGCTATATTATTCAAGAGGGGGAACCTGTTGAATAG

Coding sequence (CDS)

ATGGTCTCTCAATGCATTTCTCCCAACACGCTTCTCGATGTCACTTTCTGCATCGGGAAATCAATTCCTAATTTTTCTCAACTTCTAACCTCACCCCCTCCCCATGAGACACCACCAAGCCATGTGGTTCCAATGCTTAAAGAATTTGAAGATGAGAAGTTAAAAGAGATGATGAAGGATATGAAGCCAATGGTTTTTGGAGAGCAGAGCTATATTATTCAAGAGGGGGAACCTGTTGAATAG

Protein sequence

MVSQCISPNTLLDVTFCIGKSIPNFSQLLTSPPPHETPPSHVVPMLKEFEDEKLKEMMKDMKPMVFGEQSYIIQEGEPVE
Homology
[Close]
BLAST of MELO3C031891.2 vs. NCBI nr
Match: XP_008449547.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 2.3e-09
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 43  VPMLKEFEDEKLKEMMKDMKPMVFGEQSYIIQEGEPVE 81
           V MLKEFE+EKLKEMMKDMKPMVFGEQSYII+EGEPVE
Sbjct: 415 VLMLKEFEEEKLKEMMKDMKPMVFGEQSYIIREGEPVE 452

[Close]
BLAST of MELO3C031891.2 vs. NCBI nr
Match: XP_016900693.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 2.3e-09
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 43  VPMLKEFEDEKLKEMMKDMKPMVFGEQSYIIQEGEPVE 81
           V MLKEFE+EKLKEMMKDMKPMVFGEQSYII+EGEPVE
Sbjct: 411 VLMLKEFEEEKLKEMMKDMKPMVFGEQSYIIREGEPVE 448

[Close]
BLAST of MELO3C031891.2 vs. NCBI nr
Match: XP_016900694.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X3 [Cucumis melo] >XP_016900695.1 PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X3 [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 2.3e-09
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 43  VPMLKEFEDEKLKEMMKDMKPMVFGEQSYIIQEGEPVE 81
           V MLKEFE+EKLKEMMKDMKPMVFGEQSYII+EGEPVE
Sbjct: 308 VLMLKEFEEEKLKEMMKDMKPMVFGEQSYIIREGEPVE 345

[Close]
BLAST of MELO3C031891.2 vs. NCBI nr
Match: XP_011651603.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-08
Identity = 31/38 (81.58%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 43  VPMLKEFEDEKLKEMMKDMKPMVFGEQSYIIQEGEPVE 81
           VPMLKEFE+EKL+EMMKDMKP++F EQSYII+EGEP+E
Sbjct: 418 VPMLKEFEEEKLEEMMKDMKPIIFAEQSYIIREGEPIE 455

[Close]
BLAST of MELO3C031891.2 vs. NCBI nr
Match: XP_011651604.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-08
Identity = 31/38 (81.58%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 43  VPMLKEFEDEKLKEMMKDMKPMVFGEQSYIIQEGEPVE 81
           VPMLKEFE+EKL+EMMKDMKP++F EQSYII+EGEP+E
Sbjct: 306 VPMLKEFEEEKLEEMMKDMKPIIFAEQSYIIREGEPIE 343

[Close]
BLAST of MELO3C031891.2 vs. TrEMBL
Match: tr|A0A1S4DYA3|A0A1S4DYA3_CUCME (cyclic nucleotide-gated ion channel 1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103491398 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-09
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 43  VPMLKEFEDEKLKEMMKDMKPMVFGEQSYIIQEGEPVE 81
           V MLKEFE+EKLKEMMKDMKPMVFGEQSYII+EGEPVE
Sbjct: 308 VLMLKEFEEEKLKEMMKDMKPMVFGEQSYIIREGEPVE 345

[Close]
BLAST of MELO3C031891.2 vs. TrEMBL
Match: tr|A0A1S3BLM4|A0A1S3BLM4_CUCME (cyclic nucleotide-gated ion channel 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491398 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-09
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 43  VPMLKEFEDEKLKEMMKDMKPMVFGEQSYIIQEGEPVE 81
           V MLKEFE+EKLKEMMKDMKPMVFGEQSYII+EGEPVE
Sbjct: 415 VLMLKEFEEEKLKEMMKDMKPMVFGEQSYIIREGEPVE 452

[Close]
BLAST of MELO3C031891.2 vs. TrEMBL
Match: tr|A0A1S4DXJ0|A0A1S4DXJ0_CUCME (cyclic nucleotide-gated ion channel 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491398 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-09
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 43  VPMLKEFEDEKLKEMMKDMKPMVFGEQSYIIQEGEPVE 81
           V MLKEFE+EKLKEMMKDMKPMVFGEQSYII+EGEPVE
Sbjct: 411 VLMLKEFEEEKLKEMMKDMKPMVFGEQSYIIREGEPVE 448

[Close]
BLAST of MELO3C031891.2 vs. TrEMBL
Match: tr|A0A0A0LBE9|A0A0A0LBE9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G606870 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-06
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 43  VPMLKEFEDEKLKEMMKDMKPMVFGEQSYIIQEGEPVE 81
           VPMLKEFE+EKL+EMMKDMK M+F E +YIIQEGE VE
Sbjct: 251 VPMLKEFEEEKLEEMMKDMKLMIFAEHNYIIQEGELVE 288

The following BLAST results are available for this feature:
BLAST of MELO3C031891.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008449547.12.3e-0992.11PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis melo][more]
XP_016900693.12.3e-0992.11PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis melo][more]
XP_016900694.12.3e-0992.11PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X3 [Cucumis melo] ... [more]
XP_011651603.11.1e-0881.58PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis sativu... [more]
XP_011651604.11.1e-0881.58PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis sativu... [more]
BLAST of MELO3C031891.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C031891.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C031891.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DYA3|A0A1S4DYA3_CUCME1.5e-0992.11cyclic nucleotide-gated ion channel 1-like isoform X3 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A1S3BLM4|A0A1S3BLM4_CUCME1.5e-0992.11cyclic nucleotide-gated ion channel 1-like isoform X1 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A1S4DXJ0|A0A1S4DXJ0_CUCME1.5e-0992.11cyclic nucleotide-gated ion channel 1-like isoform X2 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A0A0LBE9|A0A0A0LBE9_CUCSA1.2e-0678.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G606870 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000595cNMP-bd_dom
IPR014710RmlC-like_jellyroll
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034220 ion transmembrane transport
biological_process GO:0006811 ion transport
biological_process GO:0055085 transmembrane transport
biological_process GO:0006810 transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0005216 ion channel activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031891.2.1MELO3C031891.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014710RmlC-like jelly roll foldGENE3DG3DSA:2.60.120.10coord: 43..80
e-value: 1.5E-6
score: 30.0
IPR000595Cyclic nucleotide-binding domainPROSITEPS50042CNMP_BINDING_3coord: 45..80
score: 7.499

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C031891.2Cucumber (Gy14) v2cgybmedB215
MELO3C031891.2Cucumber (Gy14) v2cgybmedB356
MELO3C031891.2Cucumber (Gy14) v1cgymedB002
MELO3C031891.2Cucumber (Gy14) v1cgymedB365
MELO3C031891.2Cucurbita maxima (Rimu)cmamedB321
MELO3C031891.2Cucurbita maxima (Rimu)cmamedB347
MELO3C031891.2Cucurbita maxima (Rimu)cmamedB433
MELO3C031891.2Cucurbita maxima (Rimu)cmamedB434
MELO3C031891.2Cucurbita moschata (Rifu)cmomedB306
MELO3C031891.2Cucurbita moschata (Rifu)cmomedB334
MELO3C031891.2Cucurbita moschata (Rifu)cmomedB422
MELO3C031891.2Cucurbita moschata (Rifu)cmomedB423
MELO3C031891.2Cucurbita moschata (Rifu)cmomedB650
MELO3C031891.2Cucurbita pepo (Zucchini)cpemedB045
MELO3C031891.2Cucurbita pepo (Zucchini)cpemedB051
MELO3C031891.2Cucurbita pepo (Zucchini)cpemedB210
MELO3C031891.2Cucurbita pepo (Zucchini)cpemedB236
MELO3C031891.2Cucurbita pepo (Zucchini)cpemedB837
MELO3C031891.2Wild cucumber (PI 183967)cpimedB239
MELO3C031891.2Wild cucumber (PI 183967)cpimedB401
MELO3C031891.2Cucumber (Chinese Long) v2cumedB238
MELO3C031891.2Cucumber (Chinese Long) v2cumedB393
MELO3C031891.2Melon (DHL92) v3.6.1medmedB015
MELO3C031891.2Bottle gourd (USVL1VR-Ls)lsimedB038
MELO3C031891.2Bottle gourd (USVL1VR-Ls)lsimedB384
MELO3C031891.2Watermelon (Charleston Gray)medwcgB411
MELO3C031891.2Watermelon (Charleston Gray)medwcgB417
MELO3C031891.2Watermelon (97103) v1medwmB448
MELO3C031891.2Watermelon (97103) v1medwmB470
MELO3C031891.2Silver-seed gourdcarmedB0519
MELO3C031891.2Silver-seed gourdcarmedB0549
MELO3C031891.2Silver-seed gourdcarmedB0552
MELO3C031891.2Silver-seed gourdcarmedB0976
MELO3C031891.2Cucumber (Chinese Long) v3cucmedB246
MELO3C031891.2Cucumber (Chinese Long) v3cucmedB410
MELO3C031891.2Watermelon (97103) v2medwmbB413
MELO3C031891.2Watermelon (97103) v2medwmbB424
MELO3C031891.2Wax gourdmedwgoB519
MELO3C031891.2Wax gourdmedwgoB531