MELO3C031664.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C031664.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	cyclic nucleotide-gated ion channel 1-like isoform X3
Location	chr06 : 9827628 .. 9827864 (-)
Sequence length	237

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATTGACATTTACCAAGAGCGCTGGAACTAGAACAACGATTAACACTTTCAGAAAAGGTGATTTGTTAGGGGAGCAACTATTGAATTGGGTAGTGGGAAATCTTCTTGTATCTGAAATTCCTTTGTCCAAATGTTCTCTCAAGACACATACCCAAATGGGAGCCTTCGCTCTTAAGGCTATCGATCTACAATATCATACCAAGTGGGACACAAATACGTATAGGTTAAGTTAA

mRNA sequence

ATGGGATTGACATTTACCAAGAGCGCTGGAACTAGAACAACGATTAACACTTTCAGAAAAGGTGATTTGTTAGGGGAGCAACTATTGAATTGGGTAGTGGGAAATCTTCTTGTATCTGAAATTCCTTTGTCCAAATGTTCTCTCAAGACACATACCCAAATGGGAGCCTTCGCTCTTAAGGCTATCGATCTACAATATCATACCAAGTGGGACACAAATACGTATAGGTTAAGTTAA

Coding sequence (CDS)

ATGGGATTGACATTTACCAAGAGCGCTGGAACTAGAACAACGATTAACACTTTCAGAAAAGGTGATTTGTTAGGGGAGCAACTATTGAATTGGGTAGTGGGAAATCTTCTTGTATCTGAAATTCCTTTGTCCAAATGTTCTCTCAAGACACATACCCAAATGGGAGCCTTCGCTCTTAAGGCTATCGATCTACAATATCATACCAAGTGGGACACAAATACGTATAGGTTAAGTTAA

Protein sequence

MGLTFTKSAGTRTTINTFRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALKAIDLQYHTKWDTNTYRLS

Homology

[Close]

BLAST of MELO3C031664.2.1 vs. NCBI nr
Match: XP_008449547.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 132.5 bits (332), Expect = 6.2e-28
Identity = 64/78 (82.05%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1   MGLTFTKSAGTRTTINTFRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALK 60
           MGLTF+KS GTRTTIN F KGDL GEQLL W   NL VSEIPLSKC+LK HTQM AFALK
Sbjct: 461 MGLTFSKSTGTRTTINAFGKGDLFGEQLLKWAAENLPVSEIPLSKCTLKAHTQMEAFALK 520

Query: 61  AIDLQYHTKWDTNTYRLS 79
           AID QYHTKWDTNTYRLS
Sbjct: 521 AIDPQYHTKWDTNTYRLS 538

[Close]

BLAST of MELO3C031664.2.1 vs. NCBI nr
Match: XP_016900693.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 132.5 bits (332), Expect = 6.2e-28
Identity = 64/78 (82.05%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1   MGLTFTKSAGTRTTINTFRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALK 60
           MGLTF+KS GTRTTIN F KGDL GEQLL W   NL VSEIPLSKC+LK HTQM AFALK
Sbjct: 457 MGLTFSKSTGTRTTINAFGKGDLFGEQLLKWAAENLPVSEIPLSKCTLKAHTQMEAFALK 516

Query: 61  AIDLQYHTKWDTNTYRLS 79
           AID QYHTKWDTNTYRLS
Sbjct: 517 AIDPQYHTKWDTNTYRLS 534

[Close]

BLAST of MELO3C031664.2.1 vs. NCBI nr
Match: XP_016900694.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X3 [Cucumis melo] >XP_016900695.1 PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X3 [Cucumis melo])

HSP 1 Score: 132.5 bits (332), Expect = 6.2e-28
Identity = 64/78 (82.05%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1   MGLTFTKSAGTRTTINTFRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALK 60
           MGLTF+KS GTRTTIN F KGDL GEQLL W   NL VSEIPLSKC+LK HTQM AFALK
Sbjct: 354 MGLTFSKSTGTRTTINAFGKGDLFGEQLLKWAAENLPVSEIPLSKCTLKAHTQMEAFALK 413

Query: 61  AIDLQYHTKWDTNTYRLS 79
           AID QYHTKWDTNTYRLS
Sbjct: 414 AIDPQYHTKWDTNTYRLS 431

[Close]

BLAST of MELO3C031664.2.1 vs. NCBI nr
Match: XP_011651603.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 2.9e-25
Identity = 61/78 (78.21%), Postives = 64/78 (82.05%), Query Frame = 0


Query: 1   MGLTFTKSAGTRTTINTFRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALK 60
           M LTF+K   TRTTINT  KGDL GEQLLNW  G+L VSEIPLSKC+LKT TQM AFALK
Sbjct: 464 MALTFSKRTRTRTTINTLGKGDLFGEQLLNWAAGSLPVSEIPLSKCTLKTQTQMEAFALK 523

Query: 61  AIDLQYHTKWDTNTYRLS 79
           AID QYHTKWDT TYRLS
Sbjct: 524 AIDPQYHTKWDTITYRLS 541

[Close]

BLAST of MELO3C031664.2.1 vs. NCBI nr
Match: XP_011651604.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 2.9e-25
Identity = 61/78 (78.21%), Postives = 64/78 (82.05%), Query Frame = 0


Query: 1   MGLTFTKSAGTRTTINTFRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALK 60
           M LTF+K   TRTTINT  KGDL GEQLLNW  G+L VSEIPLSKC+LKT TQM AFALK
Sbjct: 352 MALTFSKRTRTRTTINTLGKGDLFGEQLLNWAAGSLPVSEIPLSKCTLKTQTQMEAFALK 411

Query: 61  AIDLQYHTKWDTNTYRLS 79
           AID QYHTKWDT TYRLS
Sbjct: 412 AIDPQYHTKWDTITYRLS 429

[Close]

BLAST of MELO3C031664.2.1 vs. TAIR10
Match: AT3G48010.1 (cyclic nucleotide-gated channel 16)

HSP 1 Score: 43.9 bits (102), Expect = 5.3e-05
Identity = 20/50 (40.00%), Postives = 33/50 (66.00%), Query Frame = 0


Query: 17  TFRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALKAIDLQY 67
           T R GD  GE+LL W +   +   +PLS  +++T +++ AFAL+A DL++
Sbjct: 519 TLRPGDFCGEELLTWALVPNINHNLPLSTRTVRTLSEVEAFALRAEDLKF 568

[Close]

BLAST of MELO3C031664.2.1 vs. TAIR10
Match: AT5G53130.1 (cyclic nucleotide gated channel 1)

HSP 1 Score: 42.4 bits (98), Expect = 1.5e-04
Identity = 27/84 (32.14%), Postives = 44/84 (52.38%), Query Frame = 0


Query: 3   LTFTKSAGTRTTINT--FRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALK 62
           LT T + G    +N+     GD  GE+LL W +     S +P+S  +++   ++ AFALK
Sbjct: 532 LTITTNGGRTGFLNSEYLGAGDFCGEELLTWALDPHSSSNLPISTRTVRALMEVEAFALK 591

Query: 63  AIDLQY--------HTKWDTNTYR 77
           A DL++        H+K   +T+R
Sbjct: 592 ADDLKFVASQFRRLHSKQLRHTFR 615

[Close]

BLAST of MELO3C031664.2.1 vs. TAIR10
Match: AT1G15990.1 (cyclic nucleotide gated channel 7)

HSP 1 Score: 40.0 bits (92), Expect = 7.6e-04
Identity = 18/48 (37.50%), Postives = 31/48 (64.58%), Query Frame = 0


Query: 19  RKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALKAIDLQY 67
           ++GD  GE+LL W +     S +P S  ++K  T++ AFAL+A +L++
Sbjct: 537 KEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKF 584

[Close]

BLAST of MELO3C031664.2.1 vs. TAIR10
Match: AT1G19780.1 (cyclic nucleotide gated channel 8)

HSP 1 Score: 40.0 bits (92), Expect = 7.6e-04
Identity = 18/48 (37.50%), Postives = 31/48 (64.58%), Query Frame = 0


Query: 19  RKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALKAIDLQY 67
           ++GD  GE+LL W +     S +P S  ++K  T++ AFAL+A +L++
Sbjct: 572 KEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKF 619

[Close]

BLAST of MELO3C031664.2.1 vs. Swiss-Prot
Match: sp|Q9SU64|CNG16_ARATH (Probable cyclic nucleotide-gated ion channel 16 OS=Arabidopsis thaliana OX=3702 GN=CNGC16 PE=2 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 9.5e-04
Identity = 20/50 (40.00%), Postives = 33/50 (66.00%), Query Frame = 0


Query: 17  TFRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALKAIDLQY 67
           T R GD  GE+LL W +   +   +PLS  +++T +++ AFAL+A DL++
Sbjct: 519 TLRPGDFCGEELLTWALVPNINHNLPLSTRTVRTLSEVEAFALRAEDLKF 568

[Close]

BLAST of MELO3C031664.2.1 vs. TrEMBL
Match: tr|A0A1S4DYA3|A0A1S4DYA3_CUCME (cyclic nucleotide-gated ion channel 1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103491398 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.1e-28
Identity = 64/78 (82.05%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1   MGLTFTKSAGTRTTINTFRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALK 60
           MGLTF+KS GTRTTIN F KGDL GEQLL W   NL VSEIPLSKC+LK HTQM AFALK
Sbjct: 354 MGLTFSKSTGTRTTINAFGKGDLFGEQLLKWAAENLPVSEIPLSKCTLKAHTQMEAFALK 413

Query: 61  AIDLQYHTKWDTNTYRLS 79
           AID QYHTKWDTNTYRLS
Sbjct: 414 AIDPQYHTKWDTNTYRLS 431

[Close]

BLAST of MELO3C031664.2.1 vs. TrEMBL
Match: tr|A0A1S3BLM4|A0A1S3BLM4_CUCME (cyclic nucleotide-gated ion channel 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491398 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.1e-28
Identity = 64/78 (82.05%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1   MGLTFTKSAGTRTTINTFRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALK 60
           MGLTF+KS GTRTTIN F KGDL GEQLL W   NL VSEIPLSKC+LK HTQM AFALK
Sbjct: 461 MGLTFSKSTGTRTTINAFGKGDLFGEQLLKWAAENLPVSEIPLSKCTLKAHTQMEAFALK 520

Query: 61  AIDLQYHTKWDTNTYRLS 79
           AID QYHTKWDTNTYRLS
Sbjct: 521 AIDPQYHTKWDTNTYRLS 538

[Close]

BLAST of MELO3C031664.2.1 vs. TrEMBL
Match: tr|A0A1S4DXJ0|A0A1S4DXJ0_CUCME (cyclic nucleotide-gated ion channel 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491398 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.1e-28
Identity = 64/78 (82.05%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1   MGLTFTKSAGTRTTINTFRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALK 60
           MGLTF+KS GTRTTIN F KGDL GEQLL W   NL VSEIPLSKC+LK HTQM AFALK
Sbjct: 457 MGLTFSKSTGTRTTINAFGKGDLFGEQLLKWAAENLPVSEIPLSKCTLKAHTQMEAFALK 516

Query: 61  AIDLQYHTKWDTNTYRLS 79
           AID QYHTKWDTNTYRLS
Sbjct: 517 AIDPQYHTKWDTNTYRLS 534

[Close]

BLAST of MELO3C031664.2.1 vs. TrEMBL
Match: tr|W9S9M0|W9S9M0_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_002701 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.1e-04
Identity = 25/62 (40.32%), Postives = 38/62 (61.29%), Query Frame = 0


Query: 11  TRTTINTFRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALKAIDLQ--YHT 70
           +R T    +KGD  GE+L+ W + +  +S+ P+S  +LK+HT++ AFAL A DL     T
Sbjct: 64  SRCTTRRIKKGDYFGEELVKWSLTHTTISDFPISTKNLKSHTKVEAFALMANDLMNALRT 123

The following BLAST results are available for this feature:

BLAST of MELO3C031664.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008449547.1	6.2e-28	82.05	PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis melo]	[more]
XP_016900693.1	6.2e-28	82.05	PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis melo]	[more]
XP_016900694.1	6.2e-28	82.05	PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X3 [Cucumis melo] ...	[more]
XP_011651603.1	2.9e-25	78.21	PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis sativu...	[more]
XP_011651604.1	2.9e-25	78.21	PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis sativu...	[more]

BLAST of MELO3C031664.2.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G48010.1	5.3e-05	40.00	cyclic nucleotide-gated channel 16	[more]
AT5G53130.1	1.5e-04	32.14	cyclic nucleotide gated channel 1	[more]
AT1G15990.1	7.6e-04	37.50	cyclic nucleotide gated channel 7	[more]
AT1G19780.1	7.6e-04	37.50	cyclic nucleotide gated channel 8	[more]

BLAST of MELO3C031664.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SU64\|CNG16_ARATH	9.5e-04	40.00	Probable cyclic nucleotide-gated ion channel 16 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of MELO3C031664.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DYA3\|A0A1S4DYA3_CUCME	4.1e-28	82.05	cyclic nucleotide-gated ion channel 1-like isoform X3 OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A1S3BLM4\|A0A1S3BLM4_CUCME	4.1e-28	82.05	cyclic nucleotide-gated ion channel 1-like isoform X1 OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A1S4DXJ0\|A0A1S4DXJ0_CUCME	4.1e-28	82.05	cyclic nucleotide-gated ion channel 1-like isoform X2 OS=Cucumis melo OX=3656 GN...	[more]
tr\|W9S9M0\|W9S9M0_9ROSA	7.1e-04	40.32	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_002701 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR014710	RmlC-like_jellyroll

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034220	ion transmembrane transport
biological_process	GO:0006811	ion transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005216	ion channel activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C031664.2	MELO3C031664.2	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C031664.2.1.exon.1	MELO3C031664.2.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C031664.2.1.CDS.1	MELO3C031664.2.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C031664.2.1	MELO3C031664.2.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014710	RmlC-like jelly roll fold	GENE3D	G3DSA:2.60.120.10		coord: 3..70 e-value: 7.3E-8 score: 34.2