MELO3C031664.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C031664.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	cyclic nucleotide-gated ion channel 1-like isoform X3
Location	chr06 : 9827628 .. 9827864 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATTGACATTTACCAAGAGCGCTGGAACTAGAACAACGATTAACACTTTCAGAAAAGGTGATTTGTTAGGGGAGCAACTATTGAATTGGGTAGTGGGAAATCTTCTTGTATCTGAAATTCCTTTGTCCAAATGTTCTCTCAAGACACATACCCAAATGGGAGCCTTCGCTCTTAAGGCTATCGATCTACAATATCATACCAAGTGGGACACAAATACGTATAGGTTAAGTTAA

mRNA sequence

ATGGGATTGACATTTACCAAGAGCGCTGGAACTAGAACAACGATTAACACTTTCAGAAAAGGTGATTTGTTAGGGGAGCAACTATTGAATTGGGTAGTGGGAAATCTTCTTGTATCTGAAATTCCTTTGTCCAAATGTTCTCTCAAGACACATACCCAAATGGGAGCCTTCGCTCTTAAGGCTATCGATCTACAATATCATACCAAGTGGGACACAAATACGTATAGGTTAAGTTAA

Coding sequence (CDS)

ATGGGATTGACATTTACCAAGAGCGCTGGAACTAGAACAACGATTAACACTTTCAGAAAAGGTGATTTGTTAGGGGAGCAACTATTGAATTGGGTAGTGGGAAATCTTCTTGTATCTGAAATTCCTTTGTCCAAATGTTCTCTCAAGACACATACCCAAATGGGAGCCTTCGCTCTTAAGGCTATCGATCTACAATATCATACCAAGTGGGACACAAATACGTATAGGTTAAGTTAA

Protein sequence

MGLTFTKSAGTRTTINTFRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALKAIDLQYHTKWDTNTYRLS

Homology

[Close]

BLAST of MELO3C031664.2 vs. NCBI nr
Match: XP_008449547.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 132.5 bits (332), Expect = 6.2e-28
Identity = 64/78 (82.05%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1   MGLTFTKSAGTRTTINTFRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALK 60
           MGLTF+KS GTRTTIN F KGDL GEQLL W   NL VSEIPLSKC+LK HTQM AFALK
Sbjct: 461 MGLTFSKSTGTRTTINAFGKGDLFGEQLLKWAAENLPVSEIPLSKCTLKAHTQMEAFALK 520

Query: 61  AIDLQYHTKWDTNTYRLS 79
           AID QYHTKWDTNTYRLS
Sbjct: 521 AIDPQYHTKWDTNTYRLS 538

[Close]

BLAST of MELO3C031664.2 vs. NCBI nr
Match: XP_016900693.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 132.5 bits (332), Expect = 6.2e-28
Identity = 64/78 (82.05%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1   MGLTFTKSAGTRTTINTFRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALK 60
           MGLTF+KS GTRTTIN F KGDL GEQLL W   NL VSEIPLSKC+LK HTQM AFALK
Sbjct: 457 MGLTFSKSTGTRTTINAFGKGDLFGEQLLKWAAENLPVSEIPLSKCTLKAHTQMEAFALK 516

Query: 61  AIDLQYHTKWDTNTYRLS 79
           AID QYHTKWDTNTYRLS
Sbjct: 517 AIDPQYHTKWDTNTYRLS 534

[Close]

BLAST of MELO3C031664.2 vs. NCBI nr
Match: XP_016900694.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X3 [Cucumis melo] >XP_016900695.1 PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X3 [Cucumis melo])

HSP 1 Score: 132.5 bits (332), Expect = 6.2e-28
Identity = 64/78 (82.05%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1   MGLTFTKSAGTRTTINTFRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALK 60
           MGLTF+KS GTRTTIN F KGDL GEQLL W   NL VSEIPLSKC+LK HTQM AFALK
Sbjct: 354 MGLTFSKSTGTRTTINAFGKGDLFGEQLLKWAAENLPVSEIPLSKCTLKAHTQMEAFALK 413

Query: 61  AIDLQYHTKWDTNTYRLS 79
           AID QYHTKWDTNTYRLS
Sbjct: 414 AIDPQYHTKWDTNTYRLS 431

[Close]

BLAST of MELO3C031664.2 vs. NCBI nr
Match: XP_011651603.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 2.9e-25
Identity = 61/78 (78.21%), Postives = 64/78 (82.05%), Query Frame = 0


Query: 1   MGLTFTKSAGTRTTINTFRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALK 60
           M LTF+K   TRTTINT  KGDL GEQLLNW  G+L VSEIPLSKC+LKT TQM AFALK
Sbjct: 464 MALTFSKRTRTRTTINTLGKGDLFGEQLLNWAAGSLPVSEIPLSKCTLKTQTQMEAFALK 523

Query: 61  AIDLQYHTKWDTNTYRLS 79
           AID QYHTKWDT TYRLS
Sbjct: 524 AIDPQYHTKWDTITYRLS 541

[Close]

BLAST of MELO3C031664.2 vs. NCBI nr
Match: XP_011651604.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 2.9e-25
Identity = 61/78 (78.21%), Postives = 64/78 (82.05%), Query Frame = 0


Query: 1   MGLTFTKSAGTRTTINTFRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALK 60
           M LTF+K   TRTTINT  KGDL GEQLLNW  G+L VSEIPLSKC+LKT TQM AFALK
Sbjct: 352 MALTFSKRTRTRTTINTLGKGDLFGEQLLNWAAGSLPVSEIPLSKCTLKTQTQMEAFALK 411

Query: 61  AIDLQYHTKWDTNTYRLS 79
           AID QYHTKWDT TYRLS
Sbjct: 412 AIDPQYHTKWDTITYRLS 429

[Close]

BLAST of MELO3C031664.2 vs. TAIR10
Match: AT3G48010.1 (cyclic nucleotide-gated channel 16)

HSP 1 Score: 43.9 bits (102), Expect = 5.3e-05
Identity = 20/50 (40.00%), Postives = 33/50 (66.00%), Query Frame = 0


Query: 17  TFRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALKAIDLQY 67
           T R GD  GE+LL W +   +   +PLS  +++T +++ AFAL+A DL++
Sbjct: 519 TLRPGDFCGEELLTWALVPNINHNLPLSTRTVRTLSEVEAFALRAEDLKF 568

[Close]

BLAST of MELO3C031664.2 vs. TAIR10
Match: AT5G53130.1 (cyclic nucleotide gated channel 1)

HSP 1 Score: 42.4 bits (98), Expect = 1.5e-04
Identity = 27/84 (32.14%), Postives = 44/84 (52.38%), Query Frame = 0


Query: 3   LTFTKSAGTRTTINT--FRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALK 62
           LT T + G    +N+     GD  GE+LL W +     S +P+S  +++   ++ AFALK
Sbjct: 532 LTITTNGGRTGFLNSEYLGAGDFCGEELLTWALDPHSSSNLPISTRTVRALMEVEAFALK 591

Query: 63  AIDLQY--------HTKWDTNTYR 77
           A DL++        H+K   +T+R
Sbjct: 592 ADDLKFVASQFRRLHSKQLRHTFR 615

[Close]

BLAST of MELO3C031664.2 vs. TAIR10
Match: AT1G15990.1 (cyclic nucleotide gated channel 7)

HSP 1 Score: 40.0 bits (92), Expect = 7.6e-04
Identity = 18/48 (37.50%), Postives = 31/48 (64.58%), Query Frame = 0


Query: 19  RKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALKAIDLQY 67
           ++GD  GE+LL W +     S +P S  ++K  T++ AFAL+A +L++
Sbjct: 537 KEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKF 584

[Close]

BLAST of MELO3C031664.2 vs. TAIR10
Match: AT1G19780.1 (cyclic nucleotide gated channel 8)

HSP 1 Score: 40.0 bits (92), Expect = 7.6e-04
Identity = 18/48 (37.50%), Postives = 31/48 (64.58%), Query Frame = 0


Query: 19  RKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALKAIDLQY 67
           ++GD  GE+LL W +     S +P S  ++K  T++ AFAL+A +L++
Sbjct: 572 KEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKF 619

[Close]

BLAST of MELO3C031664.2 vs. Swiss-Prot
Match: sp|Q9SU64|CNG16_ARATH (Probable cyclic nucleotide-gated ion channel 16 OS=Arabidopsis thaliana OX=3702 GN=CNGC16 PE=2 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 9.5e-04
Identity = 20/50 (40.00%), Postives = 33/50 (66.00%), Query Frame = 0


Query: 17  TFRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALKAIDLQY 67
           T R GD  GE+LL W +   +   +PLS  +++T +++ AFAL+A DL++
Sbjct: 519 TLRPGDFCGEELLTWALVPNINHNLPLSTRTVRTLSEVEAFALRAEDLKF 568

[Close]

BLAST of MELO3C031664.2 vs. TrEMBL
Match: tr|A0A1S4DYA3|A0A1S4DYA3_CUCME (cyclic nucleotide-gated ion channel 1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103491398 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.1e-28
Identity = 64/78 (82.05%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1   MGLTFTKSAGTRTTINTFRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALK 60
           MGLTF+KS GTRTTIN F KGDL GEQLL W   NL VSEIPLSKC+LK HTQM AFALK
Sbjct: 354 MGLTFSKSTGTRTTINAFGKGDLFGEQLLKWAAENLPVSEIPLSKCTLKAHTQMEAFALK 413

Query: 61  AIDLQYHTKWDTNTYRLS 79
           AID QYHTKWDTNTYRLS
Sbjct: 414 AIDPQYHTKWDTNTYRLS 431

[Close]

BLAST of MELO3C031664.2 vs. TrEMBL
Match: tr|A0A1S3BLM4|A0A1S3BLM4_CUCME (cyclic nucleotide-gated ion channel 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491398 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.1e-28
Identity = 64/78 (82.05%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1   MGLTFTKSAGTRTTINTFRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALK 60
           MGLTF+KS GTRTTIN F KGDL GEQLL W   NL VSEIPLSKC+LK HTQM AFALK
Sbjct: 461 MGLTFSKSTGTRTTINAFGKGDLFGEQLLKWAAENLPVSEIPLSKCTLKAHTQMEAFALK 520

Query: 61  AIDLQYHTKWDTNTYRLS 79
           AID QYHTKWDTNTYRLS
Sbjct: 521 AIDPQYHTKWDTNTYRLS 538

[Close]

BLAST of MELO3C031664.2 vs. TrEMBL
Match: tr|A0A1S4DXJ0|A0A1S4DXJ0_CUCME (cyclic nucleotide-gated ion channel 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491398 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.1e-28
Identity = 64/78 (82.05%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1   MGLTFTKSAGTRTTINTFRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALK 60
           MGLTF+KS GTRTTIN F KGDL GEQLL W   NL VSEIPLSKC+LK HTQM AFALK
Sbjct: 457 MGLTFSKSTGTRTTINAFGKGDLFGEQLLKWAAENLPVSEIPLSKCTLKAHTQMEAFALK 516

Query: 61  AIDLQYHTKWDTNTYRLS 79
           AID QYHTKWDTNTYRLS
Sbjct: 517 AIDPQYHTKWDTNTYRLS 534

[Close]

BLAST of MELO3C031664.2 vs. TrEMBL
Match: tr|W9S9M0|W9S9M0_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_002701 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.1e-04
Identity = 25/62 (40.32%), Postives = 38/62 (61.29%), Query Frame = 0


Query: 11  TRTTINTFRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALKAIDLQ--YHT 70
           +R T    +KGD  GE+L+ W + +  +S+ P+S  +LK+HT++ AFAL A DL     T
Sbjct: 64  SRCTTRRIKKGDYFGEELVKWSLTHTTISDFPISTKNLKSHTKVEAFALMANDLMNALRT 123

The following BLAST results are available for this feature:

BLAST of MELO3C031664.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008449547.1	6.2e-28	82.05	PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis melo]	[more]
XP_016900693.1	6.2e-28	82.05	PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis melo]	[more]
XP_016900694.1	6.2e-28	82.05	PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X3 [Cucumis melo] ...	[more]
XP_011651603.1	2.9e-25	78.21	PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis sativu...	[more]
XP_011651604.1	2.9e-25	78.21	PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis sativu...	[more]

BLAST of MELO3C031664.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G48010.1	5.3e-05	40.00	cyclic nucleotide-gated channel 16	[more]
AT5G53130.1	1.5e-04	32.14	cyclic nucleotide gated channel 1	[more]
AT1G15990.1	7.6e-04	37.50	cyclic nucleotide gated channel 7	[more]
AT1G19780.1	7.6e-04	37.50	cyclic nucleotide gated channel 8	[more]

BLAST of MELO3C031664.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SU64\|CNG16_ARATH	9.5e-04	40.00	Probable cyclic nucleotide-gated ion channel 16 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of MELO3C031664.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DYA3\|A0A1S4DYA3_CUCME	4.1e-28	82.05	cyclic nucleotide-gated ion channel 1-like isoform X3 OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A1S3BLM4\|A0A1S3BLM4_CUCME	4.1e-28	82.05	cyclic nucleotide-gated ion channel 1-like isoform X1 OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A1S4DXJ0\|A0A1S4DXJ0_CUCME	4.1e-28	82.05	cyclic nucleotide-gated ion channel 1-like isoform X2 OS=Cucumis melo OX=3656 GN...	[more]
tr\|W9S9M0\|W9S9M0_9ROSA	7.1e-04	40.32	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_002701 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR014710	RmlC-like_jellyroll

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034220	ion transmembrane transport
biological_process	GO:0006811	ion transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005216	ion channel activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031664.2.1	MELO3C031664.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014710	RmlC-like jelly roll fold	GENE3D	G3DSA:2.60.120.10		coord: 3..70 e-value: 7.3E-8 score: 34.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C031664.2	Cucumber (Gy14) v2	cgybmedB215
MELO3C031664.2	Cucumber (Gy14) v2	cgybmedB356
MELO3C031664.2	Cucumber (Gy14) v1	cgymedB002
MELO3C031664.2	Cucumber (Gy14) v1	cgymedB365
MELO3C031664.2	Cucurbita maxima (Rimu)	cmamedB321
MELO3C031664.2	Cucurbita maxima (Rimu)	cmamedB347
MELO3C031664.2	Cucurbita maxima (Rimu)	cmamedB433
MELO3C031664.2	Cucurbita maxima (Rimu)	cmamedB434
MELO3C031664.2	Cucurbita moschata (Rifu)	cmomedB306
MELO3C031664.2	Cucurbita moschata (Rifu)	cmomedB334
MELO3C031664.2	Cucurbita moschata (Rifu)	cmomedB422
MELO3C031664.2	Cucurbita moschata (Rifu)	cmomedB423
MELO3C031664.2	Cucurbita moschata (Rifu)	cmomedB650
MELO3C031664.2	Cucurbita pepo (Zucchini)	cpemedB045
MELO3C031664.2	Cucurbita pepo (Zucchini)	cpemedB051
MELO3C031664.2	Cucurbita pepo (Zucchini)	cpemedB210
MELO3C031664.2	Cucurbita pepo (Zucchini)	cpemedB236
MELO3C031664.2	Cucurbita pepo (Zucchini)	cpemedB837
MELO3C031664.2	Wild cucumber (PI 183967)	cpimedB239
MELO3C031664.2	Wild cucumber (PI 183967)	cpimedB401
MELO3C031664.2	Cucumber (Chinese Long) v2	cumedB238
MELO3C031664.2	Cucumber (Chinese Long) v2	cumedB393
MELO3C031664.2	Melon (DHL92) v3.6.1	medmedB015
MELO3C031664.2	Bottle gourd (USVL1VR-Ls)	lsimedB038
MELO3C031664.2	Bottle gourd (USVL1VR-Ls)	lsimedB384
MELO3C031664.2	Watermelon (Charleston Gray)	medwcgB411
MELO3C031664.2	Watermelon (Charleston Gray)	medwcgB417
MELO3C031664.2	Watermelon (97103) v1	medwmB448
MELO3C031664.2	Watermelon (97103) v1	medwmB470
MELO3C031664.2	Silver-seed gourd	carmedB0519
MELO3C031664.2	Silver-seed gourd	carmedB0549
MELO3C031664.2	Silver-seed gourd	carmedB0552
MELO3C031664.2	Silver-seed gourd	carmedB0976
MELO3C031664.2	Cucumber (Chinese Long) v3	cucmedB246
MELO3C031664.2	Cucumber (Chinese Long) v3	cucmedB410
MELO3C031664.2	Watermelon (97103) v2	medwmbB413
MELO3C031664.2	Watermelon (97103) v2	medwmbB424
MELO3C031664.2	Wax gourd	medwgoB519
MELO3C031664.2	Wax gourd	medwgoB531