MELO3C031634.2.1 (mRNA) Melon (DHL92) v3.6.1

Overview
NameMELO3C031634.2.1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionMADS-box protein SOC1-like
Locationchr06 : 6771583 .. 6771732 (-)
Sequence length150
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCGAGATAGCGAAGAAAAGGATCAAGATAGAGACGAAGTGTTATAATGTTGAGGAGGGAACGTCAGTGGAGAGTAGCCAAACCCTAAATGCAAACATGAAGCATAAACAAGTAATGGGATTTGATCCCGAAGAGGAAAGAGGGTGGTGA

mRNA sequence

ATCGAGATAGCGAAGAAAAGGATCAAGATAGAGACGAAGTGTTATAATGTTGAGGAGGGAACGTCAGTGGAGAGTAGCCAAACCCTAAATGCAAACATGAAGCATAAACAAGTAATGGGATTTGATCCCGAAGAGGAAAGAGGGTGGTGA

Coding sequence (CDS)

ATCGAGATAGCGAAGAAAAGGATCAAGATAGAGACGAAGTGTTATAATGTTGAGGAGGGAACGTCAGTGGAGAGTAGCCAAACCCTAAATGCAAACATGAAGCATAAACAAGTAATGGGATTTGATCCCGAAGAGGAAAGAGGGTGGTGA

Protein sequence

IEIAKKRIKIETKCYNVEEGTSVESSQTLNANMKHKQVMGFDPEEERGW
Homology
[Close]
BLAST of MELO3C031634.2.1 vs. NCBI nr
Match: XP_008460878.1 (PREDICTED: MADS-box protein SOC1-like [Cucumis melo])

HSP 1 Score: 90.1 bits (222), Expect = 2.2e-15
Identity = 44/46 (95.65%), Postives = 46/46 (100.00%), Query Frame = 0 

Query: 1   IEIAKKRIKIETKCYNVEEGTSVESSQTLNANMKHKQVMGFDPEEE 47
           IEIAKKRI+IET+CYNVEEGTSVESSQTLNANMKHKQVMGFDPEEE
Sbjct: 146 IEIAKKRIEIETECYNVEEGTSVESSQTLNANMKHKQVMGFDPEEE 191

[Close]
BLAST of MELO3C031634.2.1 vs. NCBI nr
Match: XP_011650173.1 (PREDICTED: floral homeotic protein DEFICIENS-like [Cucumis sativus] >KGN62209.1 hypothetical protein Csa_2G336070 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 3.4e-08
Identity = 40/48 (83.33%), Postives = 42/48 (87.50%), Query Frame = 0 

Query: 1   IEIAKKRIKIETK-CYNVEEGTSVESS-QTLNANMKHKQVMGFDPEEE 47
           IEIAKKRI+I T+  YNVEEGTSVESS QTLNANMK KQVMGFD EEE
Sbjct: 146 IEIAKKRIEIATENNYNVEEGTSVESSGQTLNANMKCKQVMGFDHEEE 193

[Close]
BLAST of MELO3C031634.2.1 vs. TrEMBL
Match: tr|A0A1S3CDG6|A0A1S3CDG6_CUCME (MADS-box protein SOC1-like OS=Cucumis melo OX=3656 GN=LOC103499621 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.5e-15
Identity = 44/46 (95.65%), Postives = 46/46 (100.00%), Query Frame = 0 

Query: 1   IEIAKKRIKIETKCYNVEEGTSVESSQTLNANMKHKQVMGFDPEEE 47
           IEIAKKRI+IET+CYNVEEGTSVESSQTLNANMKHKQVMGFDPEEE
Sbjct: 146 IEIAKKRIEIETECYNVEEGTSVESSQTLNANMKHKQVMGFDPEEE 191

[Close]
BLAST of MELO3C031634.2.1 vs. TrEMBL
Match: tr|A0A0A0LME6|A0A0A0LME6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G336070 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.3e-08
Identity = 40/48 (83.33%), Postives = 42/48 (87.50%), Query Frame = 0 

Query: 1   IEIAKKRIKIETK-CYNVEEGTSVESS-QTLNANMKHKQVMGFDPEEE 47
           IEIAKKRI+I T+  YNVEEGTSVESS QTLNANMK KQVMGFD EEE
Sbjct: 146 IEIAKKRIEIATENNYNVEEGTSVESSGQTLNANMKCKQVMGFDHEEE 193

The following BLAST results are available for this feature:
BLAST of MELO3C031634.2.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008460878.12.2e-1595.65PREDICTED: MADS-box protein SOC1-like [Cucumis melo][more]
XP_011650173.13.4e-0883.33PREDICTED: floral homeotic protein DEFICIENS-like [Cucumis sativus] >KGN62209.1 ... [more]
BLAST of MELO3C031634.2.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C031634.2.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C031634.2.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CDG6|A0A1S3CDG6_CUCME1.5e-1595.65MADS-box protein SOC1-like OS=Cucumis melo OX=3656 GN=LOC103499621 PE=4 SV=1[more]
tr|A0A0A0LME6|A0A0A0LME6_CUCSA2.3e-0883.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G336070 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045944 positive regulation of transcription from RNA polymerase II promoter
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0000987 core promoter proximal region sequence-specific DNA binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000982 transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C031634.2MELO3C031634.2gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C031634.2.1.exon.1MELO3C031634.2.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C031634.2.1.CDS.1MELO3C031634.2.1.CDS.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C031634.2.1MELO3C031634.2.1-proteinpolypeptide