MELO3C031634.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C031634.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionMADS-box protein SOC1-like
Locationchr06 : 6771583 .. 6771732 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCGAGATAGCGAAGAAAAGGATCAAGATAGAGACGAAGTGTTATAATGTTGAGGAGGGAACGTCAGTGGAGAGTAGCCAAACCCTAAATGCAAACATGAAGCATAAACAAGTAATGGGATTTGATCCCGAAGAGGAAAGAGGGTGGTGA

mRNA sequence

ATCGAGATAGCGAAGAAAAGGATCAAGATAGAGACGAAGTGTTATAATGTTGAGGAGGGAACGTCAGTGGAGAGTAGCCAAACCCTAAATGCAAACATGAAGCATAAACAAGTAATGGGATTTGATCCCGAAGAGGAAAGAGGGTGGTGA

Coding sequence (CDS)

ATCGAGATAGCGAAGAAAAGGATCAAGATAGAGACGAAGTGTTATAATGTTGAGGAGGGAACGTCAGTGGAGAGTAGCCAAACCCTAAATGCAAACATGAAGCATAAACAAGTAATGGGATTTGATCCCGAAGAGGAAAGAGGGTGGTGA

Protein sequence

IEIAKKRIKIETKCYNVEEGTSVESSQTLNANMKHKQVMGFDPEEERGW
Homology
[Close]
BLAST of MELO3C031634.2 vs. NCBI nr
Match: XP_008460878.1 (PREDICTED: MADS-box protein SOC1-like [Cucumis melo])

HSP 1 Score: 90.1 bits (222), Expect = 2.2e-15
Identity = 44/46 (95.65%), Postives = 46/46 (100.00%), Query Frame = 0 

Query: 1   IEIAKKRIKIETKCYNVEEGTSVESSQTLNANMKHKQVMGFDPEEE 47
           IEIAKKRI+IET+CYNVEEGTSVESSQTLNANMKHKQVMGFDPEEE
Sbjct: 146 IEIAKKRIEIETECYNVEEGTSVESSQTLNANMKHKQVMGFDPEEE 191

[Close]
BLAST of MELO3C031634.2 vs. NCBI nr
Match: XP_011650173.1 (PREDICTED: floral homeotic protein DEFICIENS-like [Cucumis sativus] >KGN62209.1 hypothetical protein Csa_2G336070 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 3.4e-08
Identity = 40/48 (83.33%), Postives = 42/48 (87.50%), Query Frame = 0 

Query: 1   IEIAKKRIKIETK-CYNVEEGTSVESS-QTLNANMKHKQVMGFDPEEE 47
           IEIAKKRI+I T+  YNVEEGTSVESS QTLNANMK KQVMGFD EEE
Sbjct: 146 IEIAKKRIEIATENNYNVEEGTSVESSGQTLNANMKCKQVMGFDHEEE 193

[Close]
BLAST of MELO3C031634.2 vs. TrEMBL
Match: tr|A0A1S3CDG6|A0A1S3CDG6_CUCME (MADS-box protein SOC1-like OS=Cucumis melo OX=3656 GN=LOC103499621 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.5e-15
Identity = 44/46 (95.65%), Postives = 46/46 (100.00%), Query Frame = 0 

Query: 1   IEIAKKRIKIETKCYNVEEGTSVESSQTLNANMKHKQVMGFDPEEE 47
           IEIAKKRI+IET+CYNVEEGTSVESSQTLNANMKHKQVMGFDPEEE
Sbjct: 146 IEIAKKRIEIETECYNVEEGTSVESSQTLNANMKHKQVMGFDPEEE 191

[Close]
BLAST of MELO3C031634.2 vs. TrEMBL
Match: tr|A0A0A0LME6|A0A0A0LME6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G336070 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.3e-08
Identity = 40/48 (83.33%), Postives = 42/48 (87.50%), Query Frame = 0 

Query: 1   IEIAKKRIKIETK-CYNVEEGTSVESS-QTLNANMKHKQVMGFDPEEE 47
           IEIAKKRI+I T+  YNVEEGTSVESS QTLNANMK KQVMGFD EEE
Sbjct: 146 IEIAKKRIEIATENNYNVEEGTSVESSGQTLNANMKCKQVMGFDHEEE 193

The following BLAST results are available for this feature:
BLAST of MELO3C031634.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008460878.12.2e-1595.65PREDICTED: MADS-box protein SOC1-like [Cucumis melo][more]
XP_011650173.13.4e-0883.33PREDICTED: floral homeotic protein DEFICIENS-like [Cucumis sativus] >KGN62209.1 ... [more]
BLAST of MELO3C031634.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C031634.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C031634.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CDG6|A0A1S3CDG6_CUCME1.5e-1595.65MADS-box protein SOC1-like OS=Cucumis melo OX=3656 GN=LOC103499621 PE=4 SV=1[more]
tr|A0A0A0LME6|A0A0A0LME6_CUCSA2.3e-0883.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G336070 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045944 positive regulation of transcription from RNA polymerase II promoter
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0000987 core promoter proximal region sequence-specific DNA binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000982 transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031634.2.1MELO3C031634.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C031634.2Silver-seed gourdcarmedB0006
MELO3C031634.2Silver-seed gourdcarmedB0722
MELO3C031634.2Silver-seed gourdcarmedB0869
MELO3C031634.2Silver-seed gourdcarmedB0918
MELO3C031634.2Silver-seed gourdcarmedB0928
MELO3C031634.2Cucumber (Chinese Long) v3cucmedB230
MELO3C031634.2Cucumber (Chinese Long) v3cucmedB407
MELO3C031634.2Cucumber (Chinese Long) v3cucmedB500
MELO3C031634.2Watermelon (97103) v2medwmbB412
MELO3C031634.2Watermelon (97103) v2medwmbB423
MELO3C031634.2Watermelon (97103) v2medwmbB436
MELO3C031634.2Watermelon (97103) v2medwmbB444
MELO3C031634.2Wax gourdmedwgoB543
MELO3C031634.2Cucumber (Gy14) v2cgybmedB201
MELO3C031634.2Cucumber (Gy14) v2cgybmedB350
MELO3C031634.2Cucumber (Gy14) v2cgybmedB353
MELO3C031634.2Cucumber (Gy14) v2cgybmedB435
MELO3C031634.2Cucumber (Gy14) v1cgymedB431
MELO3C031634.2Cucumber (Gy14) v1cgymedB432
MELO3C031634.2Cucumber (Gy14) v1cgymedB496
MELO3C031634.2Cucurbita maxima (Rimu)cmamedB320
MELO3C031634.2Cucumber (Gy14) v1cgymedB591
MELO3C031634.2Cucurbita maxima (Rimu)cmamedB344
MELO3C031634.2Cucurbita maxima (Rimu)cmamedB432
MELO3C031634.2Cucurbita maxima (Rimu)cmamedB661
MELO3C031634.2Cucurbita maxima (Rimu)cmamedB665
MELO3C031634.2Wild cucumber (PI 183967)cpimedB395
MELO3C031634.2Cucurbita maxima (Rimu)cmamedB954
MELO3C031634.2Cucurbita moschata (Rifu)cmomedB305
MELO3C031634.2Cucurbita moschata (Rifu)cmomedB331
MELO3C031634.2Cucurbita moschata (Rifu)cmomedB421
MELO3C031634.2Cucurbita moschata (Rifu)cmomedB649
MELO3C031634.2Cucurbita moschata (Rifu)cmomedB654
MELO3C031634.2Cucurbita moschata (Rifu)cmomedB944
MELO3C031634.2Cucurbita pepo (Zucchini)cpemedB050
MELO3C031634.2Cucurbita pepo (Zucchini)cpemedB212
MELO3C031634.2Cucurbita pepo (Zucchini)cpemedB233
MELO3C031634.2Cucurbita pepo (Zucchini)cpemedB370
MELO3C031634.2Cucurbita pepo (Zucchini)cpemedB831
MELO3C031634.2Cucurbita pepo (Zucchini)cpemedB835
MELO3C031634.2Wild cucumber (PI 183967)cpimedB224
MELO3C031634.2Wild cucumber (PI 183967)cpimedB246
MELO3C031634.2Wild cucumber (PI 183967)cpimedB399
MELO3C031634.2Wild cucumber (PI 183967)cpimedB488
MELO3C031634.2Cucumber (Chinese Long) v2cumedB223
MELO3C031634.2Cucumber (Chinese Long) v2cumedB387
MELO3C031634.2Cucumber (Chinese Long) v2cumedB391
MELO3C031634.2Cucumber (Chinese Long) v2cumedB478
MELO3C031634.2Melon (DHL92) v3.6.1medmedB013
MELO3C031634.2Melon (DHL92) v3.6.1medmedB050
MELO3C031634.2Melon (DHL92) v3.6.1medmedB148
MELO3C031634.2Bottle gourd (USVL1VR-Ls)lsimedB036
MELO3C031634.2Bottle gourd (USVL1VR-Ls)lsimedB397
MELO3C031634.2Watermelon (Charleston Gray)medwcgB408
MELO3C031634.2Watermelon (Charleston Gray)medwcgB416
MELO3C031634.2Watermelon (97103) v1medwmB447
MELO3C031634.2Watermelon (97103) v1medwmB467