MELO3C031059.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C031059.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	B3 domain-containing protein At1g05920-like
Location	chr05 : 1680556 .. 1681045 (-)
Sequence length	490

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAATTTGGTTAATAAATGGAATTCACATTCCTCGGGGAAAGCGGTCCGGCAACGTCGAATCAAAGCAAGAAGAAAGCATAGTCTCCAGTTCCTTGTGTGAGGTGGGGCGGCGGCTATGATAGAAATGGCCAACGGTGACAATAGGGAGAGGAAGAAACCAAGGCGAAAGGAAATGGAGTTAGGGTAGAGTTCGTTCGGAGATGGCGGCGGCGATGAGGGATCAGATTGTGAGGAACGACGGTTACGAAATTCAGTTGGTGATTGAAAAGAAACTTGAGGAGAGTGATGTGAGCTAGCATAAACCATGGGAGAGATTGTGTCTTCGGACGATGAAGTTGAGAAGGGAATTTGTGAGAGAAGAAGAGAGAAGGATTTTGGATGAAGAAAATGGTGGGAAGAAGAAGAATTAAAAAGGTAAGTTTTGAGGGTTTCGGCCAACGATTTGAGACGGAGATGAGCTATTTGGAAAATGGAAAGAGAGAAAGT

mRNA sequence

ATGGGAATTTGGTTAATAAATGGAATTCACATTCCTCGGGGAAAGCGGTCCGGCAACGTCGAATCAAAGCAAGAAGAAAGCATAGTCTCCAGTTCCTTGTGTGAGGTGGGGCGGCGGCTATGATAGAAATGGCCAACGGTGACAATAGGGAGAGGAAGAAACCAAGGCGAAAGGAAATGGAGTTAGGGTAGAGTTCGTTCGGAGATGGCGGCGGCGATGAGGGATCAGATTGTGAGGAACGACGGTTACGAAATTCAGTTGGTGATTGAAAAGAAACTTGAGGAGAGTGATGTGAGCTAGCATAAACCATGGGAGAGATTGTGTCTTCGGACGATGAAGTTGAGAAGGGAATTTGTGAGAGAAGAAGAGAGAAGGATTTTGGATGAAGAAAATGGTGGGAAGAAGAAGAATTAAAAAGGTAAGTTTTGAGGGTTTCGGCCAACGATTTGAGACGGAGATGAGCTATTTGGAAAATGGAAAGAGAGAAAGT

Coding sequence (CDS)

ATGGGAATTTGGTTAATAAATGGAATTCACATTCCTCGGGGAAAGCGGTCCGGCAACGTCGAATCAAAGCAAGAAGAAAGCATAGTCTCCAGTTCCTTGTGTGAGGTGGGGCGGCGGCTATGA

Protein sequence

MGIWLINGIHIPRGKRSGNVESKQEESIVSSSLCEVGRRL

Homology

[Close]

BLAST of MELO3C031059.2.1 vs. NCBI nr
Match: XP_016899957.1 (PREDICTED: B3 domain-containing protein At1g05920-like [Cucumis melo])

HSP 1 Score: 56.2 bits (134), Expect = 2.9e-05
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 1  MGIWLINGIHIPRGKRSGNVESKQEESIVSSSLCEVGRRL 41
          MGIWLINGI IP+ KRSG+ E KQEE+ VSSSL EV   +
Sbjct: 1  MGIWLINGIQIPQRKRSGSAEPKQEENRVSSSLLEVAEAM 40

[Close]

BLAST of MELO3C031059.2.1 vs. TrEMBL
Match: tr|A0A1S4DVE5|A0A1S4DVE5_CUCME (B3 domain-containing protein At1g05920-like OS=Cucumis melo OX=3656 GN=LOC107990711 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-05
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 1  MGIWLINGIHIPRGKRSGNVESKQEESIVSSSLCEVGRRL 41
          MGIWLINGI IP+ KRSG+ E KQEE+ VSSSL EV   +
Sbjct: 1  MGIWLINGIQIPQRKRSGSAEPKQEENRVSSSLLEVAEAM 40

The following BLAST results are available for this feature:

BLAST of MELO3C031059.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016899957.1	2.9e-05	67.50	PREDICTED: B3 domain-containing protein At1g05920-like [Cucumis melo]	[more]

BLAST of MELO3C031059.2.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C031059.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C031059.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DVE5\|A0A1S4DVE5_CUCME	1.9e-05	67.50	B3 domain-containing protein At1g05920-like OS=Cucumis melo OX=3656 GN=LOC107990...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C031059.2	MELO3C031059.2	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C031059.2.1.CDS.1	MELO3C031059.2.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C031059.2.1.three_prime_UTR.1	MELO3C031059.2.1.three_prime_UTR.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C031059.2.1.exon.1	MELO3C031059.2.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C031059.2.1	MELO3C031059.2.1-protein	polypeptide