MELO3C031059.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C031059.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionB3 domain-containing protein At1g05920-like
Locationchr05 : 1680556 .. 1681045 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAATTTGGTTAATAAATGGAATTCACATTCCTCGGGGAAAGCGGTCCGGCAACGTCGAATCAAAGCAAGAAGAAAGCATAGTCTCCAGTTCCTTGTGTGAGGTGGGGCGGCGGCTATGATAGAAATGGCCAACGGTGACAATAGGGAGAGGAAGAAACCAAGGCGAAAGGAAATGGAGTTAGGGTAGAGTTCGTTCGGAGATGGCGGCGGCGATGAGGGATCAGATTGTGAGGAACGACGGTTACGAAATTCAGTTGGTGATTGAAAAGAAACTTGAGGAGAGTGATGTGAGCTAGCATAAACCATGGGAGAGATTGTGTCTTCGGACGATGAAGTTGAGAAGGGAATTTGTGAGAGAAGAAGAGAGAAGGATTTTGGATGAAGAAAATGGTGGGAAGAAGAAGAATTAAAAAGGTAAGTTTTGAGGGTTTCGGCCAACGATTTGAGACGGAGATGAGCTATTTGGAAAATGGAAAGAGAGAAAGT

mRNA sequence

ATGGGAATTTGGTTAATAAATGGAATTCACATTCCTCGGGGAAAGCGGTCCGGCAACGTCGAATCAAAGCAAGAAGAAAGCATAGTCTCCAGTTCCTTGTGTGAGGTGGGGCGGCGGCTATGATAGAAATGGCCAACGGTGACAATAGGGAGAGGAAGAAACCAAGGCGAAAGGAAATGGAGTTAGGGTAGAGTTCGTTCGGAGATGGCGGCGGCGATGAGGGATCAGATTGTGAGGAACGACGGTTACGAAATTCAGTTGGTGATTGAAAAGAAACTTGAGGAGAGTGATGTGAGCTAGCATAAACCATGGGAGAGATTGTGTCTTCGGACGATGAAGTTGAGAAGGGAATTTGTGAGAGAAGAAGAGAGAAGGATTTTGGATGAAGAAAATGGTGGGAAGAAGAAGAATTAAAAAGGTAAGTTTTGAGGGTTTCGGCCAACGATTTGAGACGGAGATGAGCTATTTGGAAAATGGAAAGAGAGAAAGT

Coding sequence (CDS)

ATGGGAATTTGGTTAATAAATGGAATTCACATTCCTCGGGGAAAGCGGTCCGGCAACGTCGAATCAAAGCAAGAAGAAAGCATAGTCTCCAGTTCCTTGTGTGAGGTGGGGCGGCGGCTATGA

Protein sequence

MGIWLINGIHIPRGKRSGNVESKQEESIVSSSLCEVGRRL
Homology
[Close]
BLAST of MELO3C031059.2 vs. NCBI nr
Match: XP_016899957.1 (PREDICTED: B3 domain-containing protein At1g05920-like [Cucumis melo])

HSP 1 Score: 56.2 bits (134), Expect = 2.9e-05
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 0 

Query: 1  MGIWLINGIHIPRGKRSGNVESKQEESIVSSSLCEVGRRL 41
          MGIWLINGI IP+ KRSG+ E KQEE+ VSSSL EV   +
Sbjct: 1  MGIWLINGIQIPQRKRSGSAEPKQEENRVSSSLLEVAEAM 40

[Close]
BLAST of MELO3C031059.2 vs. TrEMBL
Match: tr|A0A1S4DVE5|A0A1S4DVE5_CUCME (B3 domain-containing protein At1g05920-like OS=Cucumis melo OX=3656 GN=LOC107990711 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-05
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 0 

Query: 1  MGIWLINGIHIPRGKRSGNVESKQEESIVSSSLCEVGRRL 41
          MGIWLINGI IP+ KRSG+ E KQEE+ VSSSL EV   +
Sbjct: 1  MGIWLINGIQIPQRKRSGSAEPKQEENRVSSSLLEVAEAM 40

The following BLAST results are available for this feature:
BLAST of MELO3C031059.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016899957.12.9e-0567.50PREDICTED: B3 domain-containing protein At1g05920-like [Cucumis melo][more]
BLAST of MELO3C031059.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C031059.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C031059.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DVE5|A0A1S4DVE5_CUCME1.9e-0567.50B3 domain-containing protein At1g05920-like OS=Cucumis melo OX=3656 GN=LOC107990... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031059.2.1MELO3C031059.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C031059.2Cucumber (Gy14) v2cgybmedB199
MELO3C031059.2Cucumber (Gy14) v2cgybmedB427
MELO3C031059.2Cucumber (Gy14) v1cgymedB097
MELO3C031059.2Cucumber (Gy14) v1cgymedB409
MELO3C031059.2Cucurbita maxima (Rimu)cmamedB598
MELO3C031059.2Cucurbita maxima (Rimu)cmamedB654
MELO3C031059.2Cucurbita maxima (Rimu)cmamedB862
MELO3C031059.2Cucurbita moschata (Rifu)cmomedB585
MELO3C031059.2Cucurbita moschata (Rifu)cmomedB642
MELO3C031059.2Cucurbita moschata (Rifu)cmomedB856
MELO3C031059.2Cucurbita pepo (Zucchini)cpemedB324
MELO3C031059.2Cucurbita pepo (Zucchini)cpemedB829
MELO3C031059.2Cucurbita pepo (Zucchini)cpemedB946
MELO3C031059.2Wild cucumber (PI 183967)cpimedB223
MELO3C031059.2Wild cucumber (PI 183967)cpimedB480
MELO3C031059.2Cucumber (Chinese Long) v2cumedB222
MELO3C031059.2Cucumber (Chinese Long) v2cumedB471
MELO3C031059.2Melon (DHL92) v3.6.1medmedB132
MELO3C031059.2Bottle gourd (USVL1VR-Ls)lsimedB074
MELO3C031059.2Bottle gourd (USVL1VR-Ls)lsimedB277
MELO3C031059.2Watermelon (Charleston Gray)medwcgB360
MELO3C031059.2Watermelon (Charleston Gray)medwcgB370
MELO3C031059.2Watermelon (97103) v1medwmB390
MELO3C031059.2Watermelon (97103) v1medwmB408
MELO3C031059.2Silver-seed gourdcarmedB0426
MELO3C031059.2Silver-seed gourdcarmedB0692
MELO3C031059.2Silver-seed gourdcarmedB0917
MELO3C031059.2Cucumber (Chinese Long) v3cucmedB226
MELO3C031059.2Cucumber (Chinese Long) v3cucmedB490
MELO3C031059.2Watermelon (97103) v2medwmbB358
MELO3C031059.2Watermelon (97103) v2medwmbB368
MELO3C031059.2Wax gourdmedwgoB485