MELO3C030537.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C030537.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	RING-type E3 ubiquitin transferase
Location	chr04 : 14737109 .. 14737418 (+)
Sequence length	310

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCTTGCTTTGTTGGAGGAAAACAAAACTTCGATTGGGGTTTGCGGGGCCATTCCACCACTGGTATCTTTACTACTGAATGGATCGAATAGAGGGAAGAAGACGCGCTCACGACGCTCTATAAGCTTTGCTCGATCAAACCAAATAAGGAGCGGGGCATCACTGCTGGAGCTGTAAAGCCATTGGTGGCGCTAGTAGCGGAGTAAGGTACGAGTTTAGCAGAGAAGGCGATGGTGGTTTTCTGTTGCTGGGATTCAAGAGGGAAAGGATGCGATTGTGGAAGAGGGTGGAATTGTTGCGCTTGTAG

mRNA sequence

ATGAGCCTTGCTTTGTTGGAGGAAAACAAAACTTCGATTGGGGTTTGCGGGGCCATTCCACCACTGGTATCTTTACTACTGAATGGATCGAATAGAGGGAAGAAGACGCGCTCACGACGCTCTATAAGCTTTGCTCGATCAAACCAAATAAGGAGCGGGGCATCACTGCTGGAGCTGTAAAGCCATTGGTGGCGCTAGTAGCGGAGTAAGGTACGAGTTTAGCAGAGAAGGCGATGGTGGTTTTCTGTTGCTGGGATTCAAGAGGGAAAGGATGCGATTGTGGAAGAGGGTGGAATTGTTGCGCTTGTAG

Coding sequence (CDS)

ATGAGCCTTGCTTTGTTGGAGGAAAACAAAACTTCGATTGGGGTTTGCGGGGCCATTCCACCACTGGTATCTTTACTACTGAATGGATCGAATAGAGGGAAGAAGACGCGCTCACGACGCTCTATAAGCTTTGCTCGATCAAACCAAATAAGGAGCGGGGCATCACTGCTGGAGCTGTAA

Protein sequence

MSLALLEENKTSIGVCGAIPPLVSLLLNGSNRGKKTRSRRSISFARSNQIRSGASLLEL

Homology

[Close]

BLAST of MELO3C030537.2.1 vs. NCBI nr
Match: CAB10425.1 (hypothetical protein [Arabidopsis thaliana] >CAB78691.1 hypothetical protein [Arabidopsis thaliana])

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-06
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 1   MSLALLEENKTSIGVCGAIPPLVSLLLNGSNRGKK 36
           + LALLEENK SIG CGAIPPLVSLLLNGS RGKK
Sbjct: 160 LGLALLEENKGSIGACGAIPPLVSLLLNGSCRGKK 194

[Close]

BLAST of MELO3C030537.2.1 vs. NCBI nr
Match: CBI33305.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-06
Identity = 27/35 (77.14%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1   MSLALLEENKTSIGVCGAIPPLVSLLLNGSNRGKK 36
           ++L+L+++NK SIG CGAIPPLVSLLLNGSNRGKK
Sbjct: 150 LNLSLIDDNKISIGACGAIPPLVSLLLNGSNRGKK 184

[Close]

BLAST of MELO3C030537.2.1 vs. NCBI nr
Match: EYU33850.1 (hypothetical protein MIMGU_mgv1a006199mg [Erythranthe guttata])

HSP 1 Score: 56.2 bits (134), Expect = 4.3e-05
Identity = 24/35 (68.57%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 1   MSLALLEENKTSIGVCGAIPPLVSLLLNGSNRGKK 36
           +SL+  ++NK SIG CGAIPPL++LL+NGSNRGKK
Sbjct: 274 LSLSSTDDNKLSIGACGAIPPLIALLINGSNRGKK 308

[Close]

BLAST of MELO3C030537.2.1 vs. TrEMBL
Match: tr|O23493|O23493_ARATH (Uncharacterized protein AT4g16490 OS=Arabidopsis thaliana OX=3702 GN=dl4270c PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 1   MSLALLEENKTSIGVCGAIPPLVSLLLNGSNRGKK 36
           + LALLEENK SIG CGAIPPLVSLLLNGS RGKK
Sbjct: 160 LGLALLEENKGSIGACGAIPPLVSLLLNGSCRGKK 194

[Close]

BLAST of MELO3C030537.2.1 vs. TrEMBL
Match: tr|A0A022R4W1|A0A022R4W1_ERYGU (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a006199mg PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.8e-05
Identity = 24/35 (68.57%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 1   MSLALLEENKTSIGVCGAIPPLVSLLLNGSNRGKK 36
           +SL+  ++NK SIG CGAIPPL++LL+NGSNRGKK
Sbjct: 274 LSLSSTDDNKLSIGACGAIPPLIALLINGSNRGKK 308

The following BLAST results are available for this feature:

BLAST of MELO3C030537.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
CAB10425.1	1.7e-06	85.71	hypothetical protein [Arabidopsis thaliana] >CAB78691.1 hypothetical protein [Ar...	[more]
CBI33305.3	1.7e-06	77.14	unnamed protein product, partial [Vitis vinifera]	[more]
EYU33850.1	4.3e-05	68.57	hypothetical protein MIMGU_mgv1a006199mg [Erythranthe guttata]	[more]

BLAST of MELO3C030537.2.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C030537.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C030537.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|O23493\|O23493_ARATH	1.2e-06	85.71	Uncharacterized protein AT4g16490 OS=Arabidopsis thaliana OX=3702 GN=dl4270c PE=...	[more]
tr\|A0A022R4W1\|A0A022R4W1_ERYGU	2.8e-05	68.57	Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a006199mg PE...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0004842	ubiquitin-protein transferase activity
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C030537.2	MELO3C030537.2	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C030537.2.1.CDS.1	MELO3C030537.2.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C030537.2.1.exon.1	MELO3C030537.2.1.exon.1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C030537.2.1.three_prime_UTR.1	MELO3C030537.2.1.three_prime_UTR.1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C030537.2.1	MELO3C030537.2.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23315	BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING	coord: 1..36
None	No IPR available	PANTHER	PTHR23315:SF129	ARMADILLO/BETA-CATENIN-LIKE REPEAT-CONTAINING PROTEIN	coord: 1..36