MELO3C030537.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C030537.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	RING-type E3 ubiquitin transferase
Location	chr04 : 14737109 .. 14737418 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCTTGCTTTGTTGGAGGAAAACAAAACTTCGATTGGGGTTTGCGGGGCCATTCCACCACTGGTATCTTTACTACTGAATGGATCGAATAGAGGGAAGAAGACGCGCTCACGACGCTCTATAAGCTTTGCTCGATCAAACCAAATAAGGAGCGGGGCATCACTGCTGGAGCTGTAAAGCCATTGGTGGCGCTAGTAGCGGAGTAAGGTACGAGTTTAGCAGAGAAGGCGATGGTGGTTTTCTGTTGCTGGGATTCAAGAGGGAAAGGATGCGATTGTGGAAGAGGGTGGAATTGTTGCGCTTGTAG

mRNA sequence

ATGAGCCTTGCTTTGTTGGAGGAAAACAAAACTTCGATTGGGGTTTGCGGGGCCATTCCACCACTGGTATCTTTACTACTGAATGGATCGAATAGAGGGAAGAAGACGCGCTCACGACGCTCTATAAGCTTTGCTCGATCAAACCAAATAAGGAGCGGGGCATCACTGCTGGAGCTGTAAAGCCATTGGTGGCGCTAGTAGCGGAGTAAGGTACGAGTTTAGCAGAGAAGGCGATGGTGGTTTTCTGTTGCTGGGATTCAAGAGGGAAAGGATGCGATTGTGGAAGAGGGTGGAATTGTTGCGCTTGTAG

Coding sequence (CDS)

ATGAGCCTTGCTTTGTTGGAGGAAAACAAAACTTCGATTGGGGTTTGCGGGGCCATTCCACCACTGGTATCTTTACTACTGAATGGATCGAATAGAGGGAAGAAGACGCGCTCACGACGCTCTATAAGCTTTGCTCGATCAAACCAAATAAGGAGCGGGGCATCACTGCTGGAGCTGTAA

Protein sequence

MSLALLEENKTSIGVCGAIPPLVSLLLNGSNRGKKTRSRRSISFARSNQIRSGASLLEL

Homology

[Close]

BLAST of MELO3C030537.2 vs. NCBI nr
Match: CAB10425.1 (hypothetical protein [Arabidopsis thaliana] >CAB78691.1 hypothetical protein [Arabidopsis thaliana])

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-06
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 1   MSLALLEENKTSIGVCGAIPPLVSLLLNGSNRGKK 36
           + LALLEENK SIG CGAIPPLVSLLLNGS RGKK
Sbjct: 160 LGLALLEENKGSIGACGAIPPLVSLLLNGSCRGKK 194

[Close]

BLAST of MELO3C030537.2 vs. NCBI nr
Match: CBI33305.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-06
Identity = 27/35 (77.14%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1   MSLALLEENKTSIGVCGAIPPLVSLLLNGSNRGKK 36
           ++L+L+++NK SIG CGAIPPLVSLLLNGSNRGKK
Sbjct: 150 LNLSLIDDNKISIGACGAIPPLVSLLLNGSNRGKK 184

[Close]

BLAST of MELO3C030537.2 vs. NCBI nr
Match: EYU33850.1 (hypothetical protein MIMGU_mgv1a006199mg [Erythranthe guttata])

HSP 1 Score: 56.2 bits (134), Expect = 4.3e-05
Identity = 24/35 (68.57%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 1   MSLALLEENKTSIGVCGAIPPLVSLLLNGSNRGKK 36
           +SL+  ++NK SIG CGAIPPL++LL+NGSNRGKK
Sbjct: 274 LSLSSTDDNKLSIGACGAIPPLIALLINGSNRGKK 308

[Close]

BLAST of MELO3C030537.2 vs. TrEMBL
Match: tr|O23493|O23493_ARATH (Uncharacterized protein AT4g16490 OS=Arabidopsis thaliana OX=3702 GN=dl4270c PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 1   MSLALLEENKTSIGVCGAIPPLVSLLLNGSNRGKK 36
           + LALLEENK SIG CGAIPPLVSLLLNGS RGKK
Sbjct: 160 LGLALLEENKGSIGACGAIPPLVSLLLNGSCRGKK 194

[Close]

BLAST of MELO3C030537.2 vs. TrEMBL
Match: tr|A0A022R4W1|A0A022R4W1_ERYGU (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a006199mg PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.8e-05
Identity = 24/35 (68.57%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 1   MSLALLEENKTSIGVCGAIPPLVSLLLNGSNRGKK 36
           +SL+  ++NK SIG CGAIPPL++LL+NGSNRGKK
Sbjct: 274 LSLSSTDDNKLSIGACGAIPPLIALLINGSNRGKK 308

The following BLAST results are available for this feature:

BLAST of MELO3C030537.2 vs. NCBI nr


Match Name	E-value	Identity	Description
CAB10425.1	1.7e-06	85.71	hypothetical protein [Arabidopsis thaliana] >CAB78691.1 hypothetical protein [Ar...	[more]
CBI33305.3	1.7e-06	77.14	unnamed protein product, partial [Vitis vinifera]	[more]
EYU33850.1	4.3e-05	68.57	hypothetical protein MIMGU_mgv1a006199mg [Erythranthe guttata]	[more]

BLAST of MELO3C030537.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C030537.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C030537.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|O23493\|O23493_ARATH	1.2e-06	85.71	Uncharacterized protein AT4g16490 OS=Arabidopsis thaliana OX=3702 GN=dl4270c PE=...	[more]
tr\|A0A022R4W1\|A0A022R4W1_ERYGU	2.8e-05	68.57	Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a006199mg PE...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0004842	ubiquitin-protein transferase activity
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C030537.2.1	MELO3C030537.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23315	BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING	coord: 1..36
None	No IPR available	PANTHER	PTHR23315:SF129	ARMADILLO/BETA-CATENIN-LIKE REPEAT-CONTAINING PROTEIN	coord: 1..36

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C030537.2	Cucumber (Gy14) v2	cgybmedB178
MELO3C030537.2	Cucumber (Gy14) v1	cgymedB493
MELO3C030537.2	Wild cucumber (PI 183967)	cpimedB197
MELO3C030537.2	Cucumber (Chinese Long) v2	cumedB197
MELO3C030537.2	Watermelon (Charleston Gray)	medwcgB338
MELO3C030537.2	Cucumber (Chinese Long) v3	cucmedB202