MELO3C030444.2.1 (mRNA) Melon (DHL92) v3.6.1

Overview
NameMELO3C030444.2.1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionBeta-galactosidase
Locationchr04 : 8593817 .. 8594347 (-)
Sequence length531
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAAGGTTGACACAAACGAAACATGTTCACTTCAAAATGTGACTCTCCAAGTGAATACAAAAGGTCATGTGCTTCATGCTTTCATTAATAAAAGATACATTAGGTCACAATGGTAGAGTAATGGCCAGAGTTTTGTGTTTGAGAAACCTATTCTATTAAAATTGAGAACCAACACAATAACTCTTTTGAGTGCCACAGTTGGGTTGAAGAATTATGACGCATTTTATGATATGGTGCCAATGGGAATTGATGGAGGTCCCATCTATCTAATTGGAGATGGAAATGTAACAATTGATTTGTCATCAAATTTATGATCTTATAAGGTTGGATTAAATGGAGAAATGAAGCAAATTTACAACTTGATGTTATCGTAGAGCACAAATTGGATTGCACTAAATCAAAAATCTATTGGAAGGCAAATGACATGGTACAAGACTAGCTTTAAGACAGCTAGTGGAATTGACCCGGTGGTCATAGACATGCAAGGAATGGGAAAAGGTCAAGCTTGGGTAAATGGGCAAAGCATA

mRNA sequence

ATGACAAAGGTTGACACAAACGAAACATGTTCACTTCAAAATGTGACTCTCCAAGTGAATACAAAAGGTCATGTGCTTCATGCTTTCATTAATAAAAGATACATTAGGTCACAATGGTAGAGTAATGGCCAGAGTTTTGTGTTTGAGAAACCTATTCTATTAAAATTGAGAACCAACACAATAACTCTTTTGAGTGCCACAGTTGGGTTGAAGAATTATGACGCATTTTATGATATGGTGCCAATGGGAATTGATGGAGGTCCCATCTATCTAATTGGAGATGGAAATGTAACAATTGATTTGTCATCAAATTTATGATCTTATAAGGTTGGATTAAATGGAGAAATGAAGCAAATTTACAACTTGATGTTATCGTAGAGCACAAATTGGATTGCACTAAATCAAAAATCTATTGGAAGGCAAATGACATGGTACAAGACTAGCTTTAAGACAGCTAGTGGAATTGACCCGGTGGTCATAGACATGCAAGGAATGGGAAAAGGTCAAGCTTGGGTAAATGGGCAAAGCATA

Coding sequence (CDS)

ATGACAAAGGTTGACACAAACGAAACATGTTCACTTCAAAATGTGACTCTCCAAGTGAATACAAAAGGTCATGTGCTTCATGCTTTCATTAATAAAAGATACATTAGGTCACAATGGTAG

Protein sequence

MTKVDTNETCSLQNVTLQVNTKGHVLHAFINKRYIRSQW
Homology
[Close]
BLAST of MELO3C030444.2.1 vs. NCBI nr
Match: XP_008437703.1 (PREDICTED: LOW QUALITY PROTEIN: beta-galactosidase 7-like [Cucumis melo])

HSP 1 Score: 74.7 bits (182), Expect = 7.7e-11
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 1   MTKVDTNETCSLQNVTLQVNTKGHVLHAFINKRYIRSQW 40
           MTKVDTNET  LQNVTLQVNTKGHVLHAF+NKRYI SQW
Sbjct: 475 MTKVDTNETSLLQNVTLQVNTKGHVLHAFVNKRYIGSQW 513

[Close]
BLAST of MELO3C030444.2.1 vs. NCBI nr
Match: XP_008437707.1 (PREDICTED: beta-galactosidase 7-like, partial [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 2.2e-10
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 1   MTKVDTNETCSLQNVTLQVNTKGHVLHAFINKRYIRSQW 40
           MTKVDT+ T SLQNVTLQVNTKGHVLHAF+NKRYI SQW
Sbjct: 431 MTKVDTSRTSSLQNVTLQVNTKGHVLHAFVNKRYIGSQW 469

[Close]
BLAST of MELO3C030444.2.1 vs. NCBI nr
Match: XP_011648551.1 (PREDICTED: beta-galactosidase 15-like [Cucumis sativus] >KGN66624.1 hypothetical protein Csa_1G650110 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 2.9e-10
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 1   MTKVDTNETCSLQNVTLQVNTKGHVLHAFINKRYIRSQW 40
           MTKVDTN T SLQNVTLQVNTKGHVLHAF+NKRYI S+W
Sbjct: 475 MTKVDTNGTSSLQNVTLQVNTKGHVLHAFVNKRYIGSKW 513

[Close]
BLAST of MELO3C030444.2.1 vs. NCBI nr
Match: XP_008465565.1 (PREDICTED: beta-galactosidase 7-like, partial [Cucumis melo])

HSP 1 Score: 72.4 bits (176), Expect = 3.8e-10
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 0 

Query: 1   MTKVDTNETCSLQNVTLQVNTKGHVLHAFINKRYIRSQW 40
           MT VDTN T SLQNVTLQVNTKGHVLHAF+NKRYI SQW
Sbjct: 141 MTSVDTNGTSSLQNVTLQVNTKGHVLHAFVNKRYIGSQW 179

[Close]
BLAST of MELO3C030444.2.1 vs. NCBI nr
Match: XP_008452141.1 (PREDICTED: LOW QUALITY PROTEIN: beta-galactosidase 7-like [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-09
Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 1   MTKVDTNETCSLQNVTLQVNTKGHVLHAFINKRYIRSQW 40
           MT VDTN T SLQNVTLQVNTKGHVLH F+NKRYI SQW
Sbjct: 475 MTNVDTNGTSSLQNVTLQVNTKGHVLHVFVNKRYIGSQW 513

[Close]
BLAST of MELO3C030444.2.1 vs. TrEMBL
Match: tr|A0A1S3AV92|A0A1S3AV92_CUCME (Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103483048 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 5.1e-11
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 1   MTKVDTNETCSLQNVTLQVNTKGHVLHAFINKRYIRSQW 40
           MTKVDTNET  LQNVTLQVNTKGHVLHAF+NKRYI SQW
Sbjct: 475 MTKVDTNETSLLQNVTLQVNTKGHVLHAFVNKRYIGSQW 513

[Close]
BLAST of MELO3C030444.2.1 vs. TrEMBL
Match: tr|A0A1S3AUN1|A0A1S3AUN1_CUCME (Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103483052 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.5e-10
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 1   MTKVDTNETCSLQNVTLQVNTKGHVLHAFINKRYIRSQW 40
           MTKVDT+ T SLQNVTLQVNTKGHVLHAF+NKRYI SQW
Sbjct: 431 MTKVDTSRTSSLQNVTLQVNTKGHVLHAFVNKRYIGSQW 469

[Close]
BLAST of MELO3C030444.2.1 vs. TrEMBL
Match: tr|A0A0A0M006|A0A0A0M006_CUCSA (Beta-galactosidase OS=Cucumis sativus OX=3659 GN=Csa_1G650110 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.9e-10
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 1   MTKVDTNETCSLQNVTLQVNTKGHVLHAFINKRYIRSQW 40
           MTKVDTN T SLQNVTLQVNTKGHVLHAF+NKRYI S+W
Sbjct: 475 MTKVDTNGTSSLQNVTLQVNTKGHVLHAFVNKRYIGSKW 513

[Close]
BLAST of MELO3C030444.2.1 vs. TrEMBL
Match: tr|A0A1S3CP60|A0A1S3CP60_CUCME (beta-galactosidase 7-like OS=Cucumis melo OX=3656 GN=LOC103503198 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.5e-10
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 0 

Query: 1   MTKVDTNETCSLQNVTLQVNTKGHVLHAFINKRYIRSQW 40
           MT VDTN T SLQNVTLQVNTKGHVLHAF+NKRYI SQW
Sbjct: 141 MTSVDTNGTSSLQNVTLQVNTKGHVLHAFVNKRYIGSQW 179

[Close]
BLAST of MELO3C030444.2.1 vs. TrEMBL
Match: tr|A0A1S3BT39|A0A1S3BT39_CUCME (Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103493239 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 7.4e-10
Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 1   MTKVDTNETCSLQNVTLQVNTKGHVLHAFINKRYIRSQW 40
           MT VDTN T SLQNVTLQVNTKGHVLH F+NKRYI SQW
Sbjct: 475 MTNVDTNGTSSLQNVTLQVNTKGHVLHVFVNKRYIGSQW 513

The following BLAST results are available for this feature:
BLAST of MELO3C030444.2.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008437703.17.7e-1189.74PREDICTED: LOW QUALITY PROTEIN: beta-galactosidase 7-like [Cucumis melo][more]
XP_008437707.12.2e-1087.18PREDICTED: beta-galactosidase 7-like, partial [Cucumis melo][more]
XP_011648551.12.9e-1087.18PREDICTED: beta-galactosidase 15-like [Cucumis sativus] >KGN66624.1 hypothetical... [more]
XP_008465565.13.8e-1087.18PREDICTED: beta-galactosidase 7-like, partial [Cucumis melo][more]
XP_008452141.11.1e-0984.62PREDICTED: LOW QUALITY PROTEIN: beta-galactosidase 7-like [Cucumis melo][more]
BLAST of MELO3C030444.2.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C030444.2.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C030444.2.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AV92|A0A1S3AV92_CUCME5.1e-1189.74Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103483048 PE=3 SV=1[more]
tr|A0A1S3AUN1|A0A1S3AUN1_CUCME1.5e-1087.18Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103483052 PE=3 SV=1[more]
tr|A0A0A0M006|A0A0A0M006_CUCSA1.9e-1087.18Beta-galactosidase OS=Cucumis sativus OX=3659 GN=Csa_1G650110 PE=3 SV=1[more]
tr|A0A1S3CP60|A0A1S3CP60_CUCME2.5e-1087.18beta-galactosidase 7-like OS=Cucumis melo OX=3656 GN=LOC103503198 PE=4 SV=1[more]
tr|A0A1S3BT39|A0A1S3BT39_CUCME7.4e-1084.62Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103493239 PE=3 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0004565 beta-galactosidase activity
molecular_function GO:0030246 carbohydrate binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0016798 hydrolase activity, acting on glycosyl bonds
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C030444.2MELO3C030444.2gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C030444.2.1.CDS.1MELO3C030444.2.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C030444.2.1.three_prime_UTR.1MELO3C030444.2.1.three_prime_UTR.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C030444.2.1.exon.1MELO3C030444.2.1.exon.1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C030444.2.1MELO3C030444.2.1-proteinpolypeptide