MELO3C030444.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C030444.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Beta-galactosidase
Location	chr04 : 8593817 .. 8594347 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAAGGTTGACACAAACGAAACATGTTCACTTCAAAATGTGACTCTCCAAGTGAATACAAAAGGTCATGTGCTTCATGCTTTCATTAATAAAAGATACATTAGGTCACAATGGTAGAGTAATGGCCAGAGTTTTGTGTTTGAGAAACCTATTCTATTAAAATTGAGAACCAACACAATAACTCTTTTGAGTGCCACAGTTGGGTTGAAGAATTATGACGCATTTTATGATATGGTGCCAATGGGAATTGATGGAGGTCCCATCTATCTAATTGGAGATGGAAATGTAACAATTGATTTGTCATCAAATTTATGATCTTATAAGGTTGGATTAAATGGAGAAATGAAGCAAATTTACAACTTGATGTTATCGTAGAGCACAAATTGGATTGCACTAAATCAAAAATCTATTGGAAGGCAAATGACATGGTACAAGACTAGCTTTAAGACAGCTAGTGGAATTGACCCGGTGGTCATAGACATGCAAGGAATGGGAAAAGGTCAAGCTTGGGTAAATGGGCAAAGCATA

mRNA sequence

ATGACAAAGGTTGACACAAACGAAACATGTTCACTTCAAAATGTGACTCTCCAAGTGAATACAAAAGGTCATGTGCTTCATGCTTTCATTAATAAAAGATACATTAGGTCACAATGGTAGAGTAATGGCCAGAGTTTTGTGTTTGAGAAACCTATTCTATTAAAATTGAGAACCAACACAATAACTCTTTTGAGTGCCACAGTTGGGTTGAAGAATTATGACGCATTTTATGATATGGTGCCAATGGGAATTGATGGAGGTCCCATCTATCTAATTGGAGATGGAAATGTAACAATTGATTTGTCATCAAATTTATGATCTTATAAGGTTGGATTAAATGGAGAAATGAAGCAAATTTACAACTTGATGTTATCGTAGAGCACAAATTGGATTGCACTAAATCAAAAATCTATTGGAAGGCAAATGACATGGTACAAGACTAGCTTTAAGACAGCTAGTGGAATTGACCCGGTGGTCATAGACATGCAAGGAATGGGAAAAGGTCAAGCTTGGGTAAATGGGCAAAGCATA

Coding sequence (CDS)

ATGACAAAGGTTGACACAAACGAAACATGTTCACTTCAAAATGTGACTCTCCAAGTGAATACAAAAGGTCATGTGCTTCATGCTTTCATTAATAAAAGATACATTAGGTCACAATGGTAG

Protein sequence

MTKVDTNETCSLQNVTLQVNTKGHVLHAFINKRYIRSQW

Homology

[Close]

BLAST of MELO3C030444.2 vs. NCBI nr
Match: XP_008437703.1 (PREDICTED: LOW QUALITY PROTEIN: beta-galactosidase 7-like [Cucumis melo])

HSP 1 Score: 74.7 bits (182), Expect = 7.7e-11
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 1   MTKVDTNETCSLQNVTLQVNTKGHVLHAFINKRYIRSQW 40
           MTKVDTNET  LQNVTLQVNTKGHVLHAF+NKRYI SQW
Sbjct: 475 MTKVDTNETSLLQNVTLQVNTKGHVLHAFVNKRYIGSQW 513

[Close]

BLAST of MELO3C030444.2 vs. NCBI nr
Match: XP_008437707.1 (PREDICTED: beta-galactosidase 7-like, partial [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 2.2e-10
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 1   MTKVDTNETCSLQNVTLQVNTKGHVLHAFINKRYIRSQW 40
           MTKVDT+ T SLQNVTLQVNTKGHVLHAF+NKRYI SQW
Sbjct: 431 MTKVDTSRTSSLQNVTLQVNTKGHVLHAFVNKRYIGSQW 469

[Close]

BLAST of MELO3C030444.2 vs. NCBI nr
Match: XP_011648551.1 (PREDICTED: beta-galactosidase 15-like [Cucumis sativus] >KGN66624.1 hypothetical protein Csa_1G650110 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 2.9e-10
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 1   MTKVDTNETCSLQNVTLQVNTKGHVLHAFINKRYIRSQW 40
           MTKVDTN T SLQNVTLQVNTKGHVLHAF+NKRYI S+W
Sbjct: 475 MTKVDTNGTSSLQNVTLQVNTKGHVLHAFVNKRYIGSKW 513

[Close]

BLAST of MELO3C030444.2 vs. NCBI nr
Match: XP_008465565.1 (PREDICTED: beta-galactosidase 7-like, partial [Cucumis melo])

HSP 1 Score: 72.4 bits (176), Expect = 3.8e-10
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 0


Query: 1   MTKVDTNETCSLQNVTLQVNTKGHVLHAFINKRYIRSQW 40
           MT VDTN T SLQNVTLQVNTKGHVLHAF+NKRYI SQW
Sbjct: 141 MTSVDTNGTSSLQNVTLQVNTKGHVLHAFVNKRYIGSQW 179

[Close]

BLAST of MELO3C030444.2 vs. NCBI nr
Match: XP_008452141.1 (PREDICTED: LOW QUALITY PROTEIN: beta-galactosidase 7-like [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-09
Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 1   MTKVDTNETCSLQNVTLQVNTKGHVLHAFINKRYIRSQW 40
           MT VDTN T SLQNVTLQVNTKGHVLH F+NKRYI SQW
Sbjct: 475 MTNVDTNGTSSLQNVTLQVNTKGHVLHVFVNKRYIGSQW 513

[Close]

BLAST of MELO3C030444.2 vs. TrEMBL
Match: tr|A0A1S3AV92|A0A1S3AV92_CUCME (Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103483048 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 5.1e-11
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 1   MTKVDTNETCSLQNVTLQVNTKGHVLHAFINKRYIRSQW 40
           MTKVDTNET  LQNVTLQVNTKGHVLHAF+NKRYI SQW
Sbjct: 475 MTKVDTNETSLLQNVTLQVNTKGHVLHAFVNKRYIGSQW 513

[Close]

BLAST of MELO3C030444.2 vs. TrEMBL
Match: tr|A0A1S3AUN1|A0A1S3AUN1_CUCME (Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103483052 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.5e-10
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 1   MTKVDTNETCSLQNVTLQVNTKGHVLHAFINKRYIRSQW 40
           MTKVDT+ T SLQNVTLQVNTKGHVLHAF+NKRYI SQW
Sbjct: 431 MTKVDTSRTSSLQNVTLQVNTKGHVLHAFVNKRYIGSQW 469

[Close]

BLAST of MELO3C030444.2 vs. TrEMBL
Match: tr|A0A0A0M006|A0A0A0M006_CUCSA (Beta-galactosidase OS=Cucumis sativus OX=3659 GN=Csa_1G650110 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.9e-10
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 1   MTKVDTNETCSLQNVTLQVNTKGHVLHAFINKRYIRSQW 40
           MTKVDTN T SLQNVTLQVNTKGHVLHAF+NKRYI S+W
Sbjct: 475 MTKVDTNGTSSLQNVTLQVNTKGHVLHAFVNKRYIGSKW 513

[Close]

BLAST of MELO3C030444.2 vs. TrEMBL
Match: tr|A0A1S3CP60|A0A1S3CP60_CUCME (beta-galactosidase 7-like OS=Cucumis melo OX=3656 GN=LOC103503198 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.5e-10
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 0


Query: 1   MTKVDTNETCSLQNVTLQVNTKGHVLHAFINKRYIRSQW 40
           MT VDTN T SLQNVTLQVNTKGHVLHAF+NKRYI SQW
Sbjct: 141 MTSVDTNGTSSLQNVTLQVNTKGHVLHAFVNKRYIGSQW 179

[Close]

BLAST of MELO3C030444.2 vs. TrEMBL
Match: tr|A0A1S3BT39|A0A1S3BT39_CUCME (Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103493239 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 7.4e-10
Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 1   MTKVDTNETCSLQNVTLQVNTKGHVLHAFINKRYIRSQW 40
           MT VDTN T SLQNVTLQVNTKGHVLH F+NKRYI SQW
Sbjct: 475 MTNVDTNGTSSLQNVTLQVNTKGHVLHVFVNKRYIGSQW 513

The following BLAST results are available for this feature:

BLAST of MELO3C030444.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008437703.1	7.7e-11	89.74	PREDICTED: LOW QUALITY PROTEIN: beta-galactosidase 7-like [Cucumis melo]	[more]
XP_008437707.1	2.2e-10	87.18	PREDICTED: beta-galactosidase 7-like, partial [Cucumis melo]	[more]
XP_011648551.1	2.9e-10	87.18	PREDICTED: beta-galactosidase 15-like [Cucumis sativus] >KGN66624.1 hypothetical...	[more]
XP_008465565.1	3.8e-10	87.18	PREDICTED: beta-galactosidase 7-like, partial [Cucumis melo]	[more]
XP_008452141.1	1.1e-09	84.62	PREDICTED: LOW QUALITY PROTEIN: beta-galactosidase 7-like [Cucumis melo]	[more]

BLAST of MELO3C030444.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C030444.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C030444.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AV92\|A0A1S3AV92_CUCME	5.1e-11	89.74	Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103483048 PE=3 SV=1	[more]
tr\|A0A1S3AUN1\|A0A1S3AUN1_CUCME	1.5e-10	87.18	Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103483052 PE=3 SV=1	[more]
tr\|A0A0A0M006\|A0A0A0M006_CUCSA	1.9e-10	87.18	Beta-galactosidase OS=Cucumis sativus OX=3659 GN=Csa_1G650110 PE=3 SV=1	[more]
tr\|A0A1S3CP60\|A0A1S3CP60_CUCME	2.5e-10	87.18	beta-galactosidase 7-like OS=Cucumis melo OX=3656 GN=LOC103503198 PE=4 SV=1	[more]
tr\|A0A1S3BT39\|A0A1S3BT39_CUCME	7.4e-10	84.62	Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103493239 PE=3 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004565	beta-galactosidase activity
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0016798	hydrolase activity, acting on glycosyl bonds
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C030444.2.1	MELO3C030444.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C030444.2	Cucumber (Gy14) v2	cgybmedB186
MELO3C030444.2	Cucumber (Gy14) v1	cgymedB560
MELO3C030444.2	Cucurbita maxima (Rimu)	cmamedB032
MELO3C030444.2	Cucurbita maxima (Rimu)	cmamedB491
MELO3C030444.2	Cucurbita moschata (Rifu)	cmomedB021
MELO3C030444.2	Cucurbita moschata (Rifu)	cmomedB478
MELO3C030444.2	Cucurbita pepo (Zucchini)	cpemedB617
MELO3C030444.2	Cucurbita pepo (Zucchini)	cpemedB860
MELO3C030444.2	Wild cucumber (PI 183967)	cpimedB209
MELO3C030444.2	Cucumber (Chinese Long) v2	cumedB208
MELO3C030444.2	Bottle gourd (USVL1VR-Ls)	lsimedB326
MELO3C030444.2	Watermelon (Charleston Gray)	medwcgB314
MELO3C030444.2	Watermelon (97103) v1	medwmB378
MELO3C030444.2	Silver-seed gourd	carmedB0898
MELO3C030444.2	Cucumber (Chinese Long) v3	cucmedB212
MELO3C030444.2	Watermelon (97103) v2	medwmbB310
MELO3C030444.2	Wax gourd	medwgoB438