MELO3C029649.2.1 (mRNA) Melon (DHL92) v3.6.1

Overview
NameMELO3C029649.2.1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionBnaC09g25240D protein
Locationchr02 : 16903694 .. 16907401 (+)
Sequence length834
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGACCCTGAGAAGAAGAAGAAGTTGAAGAAAAGGTTTCTTTCCCATTTCTTATTTATCTTTGATTATATTGCTTATGTCTACGTCGATACGTGTATGAAGGACGCATTTTTTTGGCAGTTTGGTATAGTGTTATTGCTATTGTTTTGTTTTATTTTAATTGATTGTTTGGTCCTACTCCTATCCAATTGAAGGGAATTTTAGTTTTTTTTTAATTCATTGTCATTTCTTGTAGAATTTTTTCCGCTCCACAGTTGGATTGTTCTAGAAGTTGAATTCTCCTAGTTTTAATTGTTTATATTCCAGGGAAATGTGCCTTGAAACTATTCTACTGGGATTTATTTCTGAAAGAACTTGCGAATAGATTCATTCGTAGTCTAACGAATAAATAATAATTCTCAAGAACTCCCAAAAAGCATTAATTCTTATTGTGCCAAAAAAACATCTATTAATTGTTTGTTAGTTGAAAAGTTTCATTATCTCATTCAAAACACTTGGAACTTCTTTTTGTAGTTTTGGACTTCTTCAATCACTTTTCAGCTACGACTCAAGTCATTTTCGGTAAGTTTTGTGTTAAGACTTTGTTTAGATCAATCATTTAGACATTTCACATTCACTAGAAGAAATATGGCCTATGTGTTTTGGAATCTACATGAACCGATCTGAAACCAGGTACGTTTTTGTGAACTCGTCAATTCAAGAACTTAGCTATGGTTTGGTTCTTAAGAATTCGTTTAGTTAAGACTTTGAGGGATGAGTTTTGTTGATGTATTGAAGCAGGAGAAATTATATGCGGTAAGGTAGGCGTCTTGTATTATAATATAGAAATGATAATATAGTAAGCGTTTATGGATCATGCGTGCGTTTTATGTAGGCATTTTGTATTTATGTGTTGCCTGTAATATGTTTTGTTTTGTTTAATACATATGTACCTTAATTTTTTTGACAGAAGGAGATTTAGCTAAGGCCCTTGCAGTAAGTTTTCATTTTTCACACTTATGAATTGACATTGGTTTCTATCTCTCTCTCCTTGGATGGCTCATTAACTTTTTTTTTTGCTTTCCATTTTCAAACTCTGTTTGTAATTGTTTTATATTGTTCACTTTTATGGTTTTTGATTATCAATTGCATTCCACGATCGTTCGCTCCTGTTCTATAATTTGTACATTTGAGTCATTATTAAGAAAACCTTTCGCTAAAGAGTTTCATAGGTCATTGATATGGTTGAGCCGAACTACAAAAAAATATAAATGAACTGAAGTAAATGTATCAATAGATAAGATTGCTTTTGATATTTGAACAACATTCTTAGAAATCTATTGATATGTTTTTCAGTGCATTATCATTGATTGTTTAACAAGGCTGATCGATCTTTGTTGTCGTATGGTGCTTGGTCTTGAATATATTCTTTTTCAAGAAGTTGTTCAATGGAAGGTTTGAGAAAGGTGAAAAATTAATTATGGAAGATCTATGCCTTAGTAAACTTTTAAGTTTTGTAATATGTATTTTCTATTTGATTTAGGCTGAGGAAATGAGTGCTTTTGTCTTACTTAAAAGAGGTATGAAGGTGGCTGAGACATTGCCAATCGAAATTACTGGACTGTAAGTTTTGCTAACATAATTTTATTTTACTATTTATGATTGGTATATTTTGCCTTGGATTCTGCTATTCAATACAATTTATTGTAATTAGTTTTTGTTGTATGCTAGCAAGATATATCATTTGAAGTGGTTAGAAAATCTTTGGAGACTTATTATATAATATTAGTCCACACTATTCAGTTTACAAGACTATCGAGTAACTCTTTAGGAAATGAGAAAAATTTTAATGACTATCATTCTCCATGCATTTCTCATTTGAGTTTATTTTATTTAAGTATTTAATTGAAGATGTTCTTTAATTGGAGATTGTTTTATAGTTAACCACTTGAATTAAGGAAGTTTGTTTAATGTTGTGGCGATCTACAAATTTATTGTTATAGTATGTAATTTCATGCGGTGTTTGTTATAATTGTTGATGTCTGTTTCTATCCCCCTTCCCTCCATCTGTCCCATCTCGCCTATGTGTTTATGAATGAATGTTGCATCGCCTGTTCTTTTTGGATTTTGTTCTCTGGATCTTAGCTAGCTTTCCTTACCATTGTTTGCAGATGGGCTTTCGAGTGTTATTGAAATAAAAGGCCAACAGGTTCGAGTGGAGCTTGCATCTCAAATGAATGTTGTCAGAGGCATGTTTTGATTTTGAGCAACAGTTTATTTGATTTAGTGACATTACTTGCATACAGTTTTTTAAGAATATCTGAGAACTGTTAAAGTCTCAAATGGAAGTTAAACATGTGGTATTAACTCTATAATGCTTGTTTTATTTGAGCAGTTGACCACAATTTTATCTCGGATAATATGGCCATTTCAACTCCTCATCGGTAAATATAAGATATAATACATAACTAATCTCCTTTTGTTTGTTTGTTATTTCAAGGTTCTAATGTTTGCTATGTACCAGTGATGCATCTAGATATGGTATGAGAAGTGAAACTTCAATGCATCCTTCTCGAACTCTCCTACATCCAAACATGACGCCAATGAGAGATACTCGAACTCTCGTACATCCAAACATGACGCCAGTGAGAGATATTTGAAGTTAGTTCTCTTTCCATGTTTTTTTTTTATTCTAAATTTCTAATAGTACTATGAGAGTTATTCATATTTTACTATCTGTTTTTGTAGCAACACCAATTCATGATGACATGAGAACACCTATGCGAGATCGAGTTTGGAATCCATATGCACCCATGAGTCTGTTAAGGTAAATTTCATGTTAACTAGTGCACTTGAGATATTAATTAAGATAATGTGGATAACATTGTAGAATATATGTGATGTAGAGGCTCCATAAATTATTGTTATTATAACTATTTTCTATAATTTACTTTTTTGATATTGTCTTACAGTTAGAATCGAGGAACATTTAAATTCAAAAATGACAATTGATAAATTTAAATAGCTTTATGATAAGCTTGAAAGTATTAATGCTATAGCAGATAACTAATGAAGATTTATAGTTTTTAGTTTATTTTTTGAAATAATTCTTGAATGTATATTTGTTGTTTTGTTCTTTCTCCATAATTCTTCTCTTGGTTAGTTTCGTTTTGGAAAATACTTTCATGTTGATTCTTTTATGTGGAATCTGGTTTTTGTGGTTTACATACCCAAGCGACCTTTATGATCTATGTTTGAACCATTATTGGTTGTGATTGTTGAAGACGTAATTTTTCGACTATTGGCTTCCTTAAAGCATACAAGAGTTCATGGACATTATGAAGTTTGCTGTCAAGAAAATACTGCAAAATGTTTTCACAAGGGGTGAGATATAAATTCTGGGTTTTTTTTTTTGTTAAAATAAATTGAGTTACTCATTAGGTTGAATTATTTGCTTGTCTTTACTGTTAGCTTTGATGATCTATCTTTACTGTTAGCTTTGATGATCTATCTTTACTGTGGAAGACTCAACTTAATAACCAATGGCTTCAAAGTTCCATCATCTTTCAAAAATAGCAATGTTCTTGTGGCATATGCTTTTGTTATGCAATTCTTATCTTGATGTGTAGAGTCATACTCTAACATTTCATTTTGTTTTCTGACTAGGTTTTGCAAGAATCTATTGGAGCAGTGAAGCCATATTTACGGCAATTGATTGATTTATAG

mRNA sequence

ATGGAAGACCCTGAGAAGAAGAAGAAGTTGAAGAAAAGGTTTCTTTCCCATTTCTTATTTATCTTTGATTATATTGCTTATGTCTACGTCGATACGTGTATGAAGGACGCATTTTTTTGGCAGTTTGGTATATTTTGGACTTCTTCAATCACTTTTCAGCTACGACTCAAGTCATTTTCGATCAATCATTTAGACATTTCACATTCACTAGAAGAAATATGGCCTATGTGTTTTGGAATCTACATGAACCGATCTGAAACCAGGTACGTTTTTGTGAACTCGTCAATTCAAGAACTTAGCTATGAAGGAGATTTAGCTAAGGCCCTTGCATGCATTATCATTGATTGTTTAACAAGGCTGATCGATCTTTGTTGTCGTATGGTGCTTGGTCTTGAATATATTCTTTTTCAAGAAGTTGTTCAATGGAAGGCTGAGGAAATGAGTGCTTTTGTCTTACTTAAAAGAGGTATGAAGGTGGCTGAGACATTGCCAATCGAAATTACTGGACTATGTTCTTTAATTGGAGATTGTTTTATATTGACCACAATTTTATCTCGGATAATATGGCCATTTCAACTCCTCATCGCAACACCAATTCATGATGACATGAGAACACCTATGCGAGATCGAGTTTGGAATCCATATGCACCCATGAGTCTGTTAAGCTTTGATGATCTATCTTTACTGTTAGCTTTGATGATCTATCTTTACTGTGGAAGACTCAACTTAATAACCAATGGCTTCAAAGTTCCATCATCTTTCAAAAATAGCAATGTTTTGCAAGAATCTATTGGAGCAGTGAAGCCATATTTACGGCAATTGATTGATTTATAG

Coding sequence (CDS)

ATGGAAGACCCTGAGAAGAAGAAGAAGTTGAAGAAAAGGTTTCTTTCCCATTTCTTATTTATCTTTGATTATATTGCTTATGTCTACGTCGATACGTGTATGAAGGACGCATTTTTTTGGCAGTTTGGTATATTTTGGACTTCTTCAATCACTTTTCAGCTACGACTCAAGTCATTTTCGATCAATCATTTAGACATTTCACATTCACTAGAAGAAATATGGCCTATGTGTTTTGGAATCTACATGAACCGATCTGAAACCAGGTACGTTTTTGTGAACTCGTCAATTCAAGAACTTAGCTATGAAGGAGATTTAGCTAAGGCCCTTGCATGCATTATCATTGATTGTTTAACAAGGCTGATCGATCTTTGTTGTCGTATGGTGCTTGGTCTTGAATATATTCTTTTTCAAGAAGTTGTTCAATGGAAGGCTGAGGAAATGAGTGCTTTTGTCTTACTTAAAAGAGGTATGAAGGTGGCTGAGACATTGCCAATCGAAATTACTGGACTATGTTCTTTAATTGGAGATTGTTTTATATTGACCACAATTTTATCTCGGATAATATGGCCATTTCAACTCCTCATCGCAACACCAATTCATGATGACATGAGAACACCTATGCGAGATCGAGTTTGGAATCCATATGCACCCATGAGTCTGTTAAGCTTTGATGATCTATCTTTACTGTTAGCTTTGATGATCTATCTTTACTGTGGAAGACTCAACTTAATAACCAATGGCTTCAAAGTTCCATCATCTTTCAAAAATAGCAATGTTTTGCAAGAATCTATTGGAGCAGTGAAGCCATATTTACGGCAATTGATTGATTTATAG

Protein sequence

MEDPEKKKKLKKRFLSHFLFIFDYIAYVYVDTCMKDAFFWQFGIFWTSSITFQLRLKSFSINHLDISHSLEEIWPMCFGIYMNRSETRYVFVNSSIQELSYEGDLAKALACIIIDCLTRLIDLCCRMVLGLEYILFQEVVQWKAEEMSAFVLLKRGMKVAETLPIEITGLCSLIGDCFILTTILSRIIWPFQLLIATPIHDDMRTPMRDRVWNPYAPMSLLSFDDLSLLLALMIYLYCGRLNLITNGFKVPSSFKNSNVLQESIGAVKPYLRQLIDL
Homology
[Close]
BLAST of MELO3C029649.2.1 vs. NCBI nr
Match: ONH89815.1 (hypothetical protein PRUPE_8G018000 [Prunus persica])

HSP 1 Score: 55.5 bits (132), Expect = 3.4e-04
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 0 

Query: 192 QLLIATPIHDDMRTPMRDRVWNPYAPMS 220
           +++ ATPIHD MRTPMRDR WNPYAPMS
Sbjct: 745 KVVTATPIHDGMRTPMRDRAWNPYAPMS 772

[Close]
BLAST of MELO3C029649.2.1 vs. NCBI nr
Match: XP_002305464.2 (putative transcription elongation factor SPT5 homolog 1 [Populus trichocarpa] >XP_024454835.1 putative transcription elongation factor SPT5 homolog 1 [Populus trichocarpa] >PNT41570.1 hypothetical protein POPTR_004G162500v3 [Populus trichocarpa])

HSP 1 Score: 54.7 bits (130), Expect = 5.9e-04
Identity = 23/26 (88.46%), Postives = 23/26 (88.46%), Query Frame = 0 

Query: 196 ATPIHDDMRTPMRDRVWNPYAPMSLL 222
           ATPIHD MRTPMRDR WNPYAPMS L
Sbjct: 805 ATPIHDGMRTPMRDRAWNPYAPMSPL 830

[Close]
BLAST of MELO3C029649.2.1 vs. NCBI nr
Match: XP_002265283.2 (PREDICTED: putative transcription elongation factor SPT5 homolog 1 [Vitis vinifera] >CBI19960.3 unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 54.7 bits (130), Expect = 5.9e-04
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 0 

Query: 196 ATPIHDDMRTPMRDRVWNPYAPMS 220
           ATPIHD MRTPMRDR WNPYAPMS
Sbjct: 789 ATPIHDGMRTPMRDRAWNPYAPMS 812

[Close]
BLAST of MELO3C029649.2.1 vs. NCBI nr
Match: KJB59371.1 (hypothetical protein B456_009G252200 [Gossypium raimondii] >KJB59373.1 hypothetical protein B456_009G252200 [Gossypium raimondii])

HSP 1 Score: 54.7 bits (130), Expect = 5.9e-04
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 0 

Query: 196 ATPIHDDMRTPMRDRVWNPYAPMS 220
           ATPIHD MRTPMRDR WNPYAPMS
Sbjct: 532 ATPIHDGMRTPMRDRAWNPYAPMS 555

[Close]
BLAST of MELO3C029649.2.1 vs. NCBI nr
Match: KJB59372.1 (hypothetical protein B456_009G252200 [Gossypium raimondii])

HSP 1 Score: 54.7 bits (130), Expect = 5.9e-04
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 0 

Query: 196 ATPIHDDMRTPMRDRVWNPYAPMS 220
           ATPIHD MRTPMRDR WNPYAPMS
Sbjct: 784 ATPIHDGMRTPMRDRAWNPYAPMS 807

[Close]
BLAST of MELO3C029649.2.1 vs. TrEMBL
Match: tr|A0A251MRD7|A0A251MRD7_PRUPE (Transcription elongation factor SPT5 OS=Prunus persica OX=3760 GN=PRUPE_8G018000 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.3e-04
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 0 

Query: 192 QLLIATPIHDDMRTPMRDRVWNPYAPMS 220
           +++ ATPIHD MRTPMRDR WNPYAPMS
Sbjct: 745 KVVTATPIHDGMRTPMRDRAWNPYAPMS 772

[Close]
BLAST of MELO3C029649.2.1 vs. TrEMBL
Match: tr|A0A1U8K7B9|A0A1U8K7B9_GOSHI (Transcription elongation factor SPT5 OS=Gossypium hirsutum OX=3635 GN=LOC107914125 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.9e-04
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 0 

Query: 196 ATPIHDDMRTPMRDRVWNPYAPMS 220
           ATPIHD MRTPMRDR WNPYAPMS
Sbjct: 807 ATPIHDGMRTPMRDRAWNPYAPMS 830

[Close]
BLAST of MELO3C029649.2.1 vs. TrEMBL
Match: tr|A0A0D2TV81|A0A0D2TV81_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G252200 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.9e-04
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 0 

Query: 196 ATPIHDDMRTPMRDRVWNPYAPMS 220
           ATPIHD MRTPMRDR WNPYAPMS
Sbjct: 532 ATPIHDGMRTPMRDRAWNPYAPMS 555

[Close]
BLAST of MELO3C029649.2.1 vs. TrEMBL
Match: tr|E0CQN1|E0CQN1_VITVI (Transcription elongation factor SPT5 OS=Vitis vinifera OX=29760 GN=VIT_18s0001g15400 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.9e-04
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 0 

Query: 196 ATPIHDDMRTPMRDRVWNPYAPMS 220
           ATPIHD MRTPMRDR WNPYAPMS
Sbjct: 789 ATPIHDGMRTPMRDRAWNPYAPMS 812

[Close]
BLAST of MELO3C029649.2.1 vs. TrEMBL
Match: tr|A5BMK7|A5BMK7_VITVI (Transcription elongation factor SPT5 OS=Vitis vinifera OX=29760 GN=VITISV_043874 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.9e-04
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 0 

Query: 196 ATPIHDDMRTPMRDRVWNPYAPMS 220
           ATPIHD MRTPMRDR WNPYAPMS
Sbjct: 798 ATPIHDGMRTPMRDRAWNPYAPMS 821

The following BLAST results are available for this feature:
BLAST of MELO3C029649.2.1 vs. NCBI nr
Match NameE-valueIdentityDescription
ONH89815.13.4e-0478.57hypothetical protein PRUPE_8G018000 [Prunus persica][more]
XP_002305464.25.9e-0488.46putative transcription elongation factor SPT5 homolog 1 [Populus trichocarpa] >X... [more]
XP_002265283.25.9e-0491.67PREDICTED: putative transcription elongation factor SPT5 homolog 1 [Vitis vinife... [more]
KJB59371.15.9e-0491.67hypothetical protein B456_009G252200 [Gossypium raimondii] >KJB59373.1 hypotheti... [more]
KJB59372.15.9e-0491.67hypothetical protein B456_009G252200 [Gossypium raimondii][more]
BLAST of MELO3C029649.2.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C029649.2.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C029649.2.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A251MRD7|A0A251MRD7_PRUPE2.3e-0478.57Transcription elongation factor SPT5 OS=Prunus persica OX=3760 GN=PRUPE_8G018000... [more]
tr|A0A1U8K7B9|A0A1U8K7B9_GOSHI3.9e-0491.67Transcription elongation factor SPT5 OS=Gossypium hirsutum OX=3635 GN=LOC1079141... [more]
tr|A0A0D2TV81|A0A0D2TV81_GOSRA3.9e-0491.67Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G252200 PE=4 ... [more]
tr|E0CQN1|E0CQN1_VITVI3.9e-0491.67Transcription elongation factor SPT5 OS=Vitis vinifera OX=29760 GN=VIT_18s0001g1... [more]
tr|A5BMK7|A5BMK7_VITVI3.9e-0491.67Transcription elongation factor SPT5 OS=Vitis vinifera OX=29760 GN=VITISV_043874... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C029649.2MELO3C029649.2gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C029649.2.1.CDS.1MELO3C029649.2.1.CDS.1CDS
MELO3C029649.2.1.CDS.2MELO3C029649.2.1.CDS.2CDS
MELO3C029649.2.1.CDS.3MELO3C029649.2.1.CDS.3CDS
MELO3C029649.2.1.CDS.4MELO3C029649.2.1.CDS.4CDS
MELO3C029649.2.1.CDS.5MELO3C029649.2.1.CDS.5CDS
MELO3C029649.2.1.CDS.6MELO3C029649.2.1.CDS.6CDS
MELO3C029649.2.1.CDS.7MELO3C029649.2.1.CDS.7CDS
MELO3C029649.2.1.CDS.8MELO3C029649.2.1.CDS.8CDS
MELO3C029649.2.1.CDS.9MELO3C029649.2.1.CDS.9CDS
MELO3C029649.2.1.CDS.10MELO3C029649.2.1.CDS.10CDS
MELO3C029649.2.1.CDS.11MELO3C029649.2.1.CDS.11CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C029649.2.1.exon.1MELO3C029649.2.1.exon.1exon
MELO3C029649.2.1.exon.2MELO3C029649.2.1.exon.2exon
MELO3C029649.2.1.exon.3MELO3C029649.2.1.exon.3exon
MELO3C029649.2.1.exon.4MELO3C029649.2.1.exon.4exon
MELO3C029649.2.1.exon.5MELO3C029649.2.1.exon.5exon
MELO3C029649.2.1.exon.6MELO3C029649.2.1.exon.6exon
MELO3C029649.2.1.exon.7MELO3C029649.2.1.exon.7exon
MELO3C029649.2.1.exon.8MELO3C029649.2.1.exon.8exon
MELO3C029649.2.1.exon.9MELO3C029649.2.1.exon.9exon
MELO3C029649.2.1.exon.10MELO3C029649.2.1.exon.10exon
MELO3C029649.2.1.exon.11MELO3C029649.2.1.exon.11exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C029649.2.1MELO3C029649.2.1-proteinpolypeptide