MELO3C029649.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C029649.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionBnaC09g25240D protein
Locationchr02 : 16903694 .. 16907401 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGACCCTGAGAAGAAGAAGAAGTTGAAGAAAAGGTTTCTTTCCCATTTCTTATTTATCTTTGATTATATTGCTTATGTCTACGTCGATACGTGTATGAAGGACGCATTTTTTTGGCAGTTTGGTATAGTGTTATTGCTATTGTTTTGTTTTATTTTAATTGATTGTTTGGTCCTACTCCTATCCAATTGAAGGGAATTTTAGTTTTTTTTTAATTCATTGTCATTTCTTGTAGAATTTTTTCCGCTCCACAGTTGGATTGTTCTAGAAGTTGAATTCTCCTAGTTTTAATTGTTTATATTCCAGGGAAATGTGCCTTGAAACTATTCTACTGGGATTTATTTCTGAAAGAACTTGCGAATAGATTCATTCGTAGTCTAACGAATAAATAATAATTCTCAAGAACTCCCAAAAAGCATTAATTCTTATTGTGCCAAAAAAACATCTATTAATTGTTTGTTAGTTGAAAAGTTTCATTATCTCATTCAAAACACTTGGAACTTCTTTTTGTAGTTTTGGACTTCTTCAATCACTTTTCAGCTACGACTCAAGTCATTTTCGGTAAGTTTTGTGTTAAGACTTTGTTTAGATCAATCATTTAGACATTTCACATTCACTAGAAGAAATATGGCCTATGTGTTTTGGAATCTACATGAACCGATCTGAAACCAGGTACGTTTTTGTGAACTCGTCAATTCAAGAACTTAGCTATGGTTTGGTTCTTAAGAATTCGTTTAGTTAAGACTTTGAGGGATGAGTTTTGTTGATGTATTGAAGCAGGAGAAATTATATGCGGTAAGGTAGGCGTCTTGTATTATAATATAGAAATGATAATATAGTAAGCGTTTATGGATCATGCGTGCGTTTTATGTAGGCATTTTGTATTTATGTGTTGCCTGTAATATGTTTTGTTTTGTTTAATACATATGTACCTTAATTTTTTTGACAGAAGGAGATTTAGCTAAGGCCCTTGCAGTAAGTTTTCATTTTTCACACTTATGAATTGACATTGGTTTCTATCTCTCTCTCCTTGGATGGCTCATTAACTTTTTTTTTTGCTTTCCATTTTCAAACTCTGTTTGTAATTGTTTTATATTGTTCACTTTTATGGTTTTTGATTATCAATTGCATTCCACGATCGTTCGCTCCTGTTCTATAATTTGTACATTTGAGTCATTATTAAGAAAACCTTTCGCTAAAGAGTTTCATAGGTCATTGATATGGTTGAGCCGAACTACAAAAAAATATAAATGAACTGAAGTAAATGTATCAATAGATAAGATTGCTTTTGATATTTGAACAACATTCTTAGAAATCTATTGATATGTTTTTCAGTGCATTATCATTGATTGTTTAACAAGGCTGATCGATCTTTGTTGTCGTATGGTGCTTGGTCTTGAATATATTCTTTTTCAAGAAGTTGTTCAATGGAAGGTTTGAGAAAGGTGAAAAATTAATTATGGAAGATCTATGCCTTAGTAAACTTTTAAGTTTTGTAATATGTATTTTCTATTTGATTTAGGCTGAGGAAATGAGTGCTTTTGTCTTACTTAAAAGAGGTATGAAGGTGGCTGAGACATTGCCAATCGAAATTACTGGACTGTAAGTTTTGCTAACATAATTTTATTTTACTATTTATGATTGGTATATTTTGCCTTGGATTCTGCTATTCAATACAATTTATTGTAATTAGTTTTTGTTGTATGCTAGCAAGATATATCATTTGAAGTGGTTAGAAAATCTTTGGAGACTTATTATATAATATTAGTCCACACTATTCAGTTTACAAGACTATCGAGTAACTCTTTAGGAAATGAGAAAAATTTTAATGACTATCATTCTCCATGCATTTCTCATTTGAGTTTATTTTATTTAAGTATTTAATTGAAGATGTTCTTTAATTGGAGATTGTTTTATAGTTAACCACTTGAATTAAGGAAGTTTGTTTAATGTTGTGGCGATCTACAAATTTATTGTTATAGTATGTAATTTCATGCGGTGTTTGTTATAATTGTTGATGTCTGTTTCTATCCCCCTTCCCTCCATCTGTCCCATCTCGCCTATGTGTTTATGAATGAATGTTGCATCGCCTGTTCTTTTTGGATTTTGTTCTCTGGATCTTAGCTAGCTTTCCTTACCATTGTTTGCAGATGGGCTTTCGAGTGTTATTGAAATAAAAGGCCAACAGGTTCGAGTGGAGCTTGCATCTCAAATGAATGTTGTCAGAGGCATGTTTTGATTTTGAGCAACAGTTTATTTGATTTAGTGACATTACTTGCATACAGTTTTTTAAGAATATCTGAGAACTGTTAAAGTCTCAAATGGAAGTTAAACATGTGGTATTAACTCTATAATGCTTGTTTTATTTGAGCAGTTGACCACAATTTTATCTCGGATAATATGGCCATTTCAACTCCTCATCGGTAAATATAAGATATAATACATAACTAATCTCCTTTTGTTTGTTTGTTATTTCAAGGTTCTAATGTTTGCTATGTACCAGTGATGCATCTAGATATGGTATGAGAAGTGAAACTTCAATGCATCCTTCTCGAACTCTCCTACATCCAAACATGACGCCAATGAGAGATACTCGAACTCTCGTACATCCAAACATGACGCCAGTGAGAGATATTTGAAGTTAGTTCTCTTTCCATGTTTTTTTTTTATTCTAAATTTCTAATAGTACTATGAGAGTTATTCATATTTTACTATCTGTTTTTGTAGCAACACCAATTCATGATGACATGAGAACACCTATGCGAGATCGAGTTTGGAATCCATATGCACCCATGAGTCTGTTAAGGTAAATTTCATGTTAACTAGTGCACTTGAGATATTAATTAAGATAATGTGGATAACATTGTAGAATATATGTGATGTAGAGGCTCCATAAATTATTGTTATTATAACTATTTTCTATAATTTACTTTTTTGATATTGTCTTACAGTTAGAATCGAGGAACATTTAAATTCAAAAATGACAATTGATAAATTTAAATAGCTTTATGATAAGCTTGAAAGTATTAATGCTATAGCAGATAACTAATGAAGATTTATAGTTTTTAGTTTATTTTTTGAAATAATTCTTGAATGTATATTTGTTGTTTTGTTCTTTCTCCATAATTCTTCTCTTGGTTAGTTTCGTTTTGGAAAATACTTTCATGTTGATTCTTTTATGTGGAATCTGGTTTTTGTGGTTTACATACCCAAGCGACCTTTATGATCTATGTTTGAACCATTATTGGTTGTGATTGTTGAAGACGTAATTTTTCGACTATTGGCTTCCTTAAAGCATACAAGAGTTCATGGACATTATGAAGTTTGCTGTCAAGAAAATACTGCAAAATGTTTTCACAAGGGGTGAGATATAAATTCTGGGTTTTTTTTTTTGTTAAAATAAATTGAGTTACTCATTAGGTTGAATTATTTGCTTGTCTTTACTGTTAGCTTTGATGATCTATCTTTACTGTTAGCTTTGATGATCTATCTTTACTGTGGAAGACTCAACTTAATAACCAATGGCTTCAAAGTTCCATCATCTTTCAAAAATAGCAATGTTCTTGTGGCATATGCTTTTGTTATGCAATTCTTATCTTGATGTGTAGAGTCATACTCTAACATTTCATTTTGTTTTCTGACTAGGTTTTGCAAGAATCTATTGGAGCAGTGAAGCCATATTTACGGCAATTGATTGATTTATAG

mRNA sequence

ATGGAAGACCCTGAGAAGAAGAAGAAGTTGAAGAAAAGGTTTCTTTCCCATTTCTTATTTATCTTTGATTATATTGCTTATGTCTACGTCGATACGTGTATGAAGGACGCATTTTTTTGGCAGTTTGGTATATTTTGGACTTCTTCAATCACTTTTCAGCTACGACTCAAGTCATTTTCGATCAATCATTTAGACATTTCACATTCACTAGAAGAAATATGGCCTATGTGTTTTGGAATCTACATGAACCGATCTGAAACCAGGTACGTTTTTGTGAACTCGTCAATTCAAGAACTTAGCTATGAAGGAGATTTAGCTAAGGCCCTTGCATGCATTATCATTGATTGTTTAACAAGGCTGATCGATCTTTGTTGTCGTATGGTGCTTGGTCTTGAATATATTCTTTTTCAAGAAGTTGTTCAATGGAAGGCTGAGGAAATGAGTGCTTTTGTCTTACTTAAAAGAGGTATGAAGGTGGCTGAGACATTGCCAATCGAAATTACTGGACTATGTTCTTTAATTGGAGATTGTTTTATATTGACCACAATTTTATCTCGGATAATATGGCCATTTCAACTCCTCATCGCAACACCAATTCATGATGACATGAGAACACCTATGCGAGATCGAGTTTGGAATCCATATGCACCCATGAGTCTGTTAAGCTTTGATGATCTATCTTTACTGTTAGCTTTGATGATCTATCTTTACTGTGGAAGACTCAACTTAATAACCAATGGCTTCAAAGTTCCATCATCTTTCAAAAATAGCAATGTTTTGCAAGAATCTATTGGAGCAGTGAAGCCATATTTACGGCAATTGATTGATTTATAG

Coding sequence (CDS)

ATGGAAGACCCTGAGAAGAAGAAGAAGTTGAAGAAAAGGTTTCTTTCCCATTTCTTATTTATCTTTGATTATATTGCTTATGTCTACGTCGATACGTGTATGAAGGACGCATTTTTTTGGCAGTTTGGTATATTTTGGACTTCTTCAATCACTTTTCAGCTACGACTCAAGTCATTTTCGATCAATCATTTAGACATTTCACATTCACTAGAAGAAATATGGCCTATGTGTTTTGGAATCTACATGAACCGATCTGAAACCAGGTACGTTTTTGTGAACTCGTCAATTCAAGAACTTAGCTATGAAGGAGATTTAGCTAAGGCCCTTGCATGCATTATCATTGATTGTTTAACAAGGCTGATCGATCTTTGTTGTCGTATGGTGCTTGGTCTTGAATATATTCTTTTTCAAGAAGTTGTTCAATGGAAGGCTGAGGAAATGAGTGCTTTTGTCTTACTTAAAAGAGGTATGAAGGTGGCTGAGACATTGCCAATCGAAATTACTGGACTATGTTCTTTAATTGGAGATTGTTTTATATTGACCACAATTTTATCTCGGATAATATGGCCATTTCAACTCCTCATCGCAACACCAATTCATGATGACATGAGAACACCTATGCGAGATCGAGTTTGGAATCCATATGCACCCATGAGTCTGTTAAGCTTTGATGATCTATCTTTACTGTTAGCTTTGATGATCTATCTTTACTGTGGAAGACTCAACTTAATAACCAATGGCTTCAAAGTTCCATCATCTTTCAAAAATAGCAATGTTTTGCAAGAATCTATTGGAGCAGTGAAGCCATATTTACGGCAATTGATTGATTTATAG

Protein sequence

MEDPEKKKKLKKRFLSHFLFIFDYIAYVYVDTCMKDAFFWQFGIFWTSSITFQLRLKSFSINHLDISHSLEEIWPMCFGIYMNRSETRYVFVNSSIQELSYEGDLAKALACIIIDCLTRLIDLCCRMVLGLEYILFQEVVQWKAEEMSAFVLLKRGMKVAETLPIEITGLCSLIGDCFILTTILSRIIWPFQLLIATPIHDDMRTPMRDRVWNPYAPMSLLSFDDLSLLLALMIYLYCGRLNLITNGFKVPSSFKNSNVLQESIGAVKPYLRQLIDL
BLAST of MELO3C029649.2 vs. NCBI nr
Match: ONH89815.1 (hypothetical protein PRUPE_8G018000 [Prunus persica])

HSP 1 Score: 55.5 bits (132), Expect = 3.4e-04
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 0

Query: 192 QLLIATPIHDDMRTPMRDRVWNPYAPMS 220
           +++ ATPIHD MRTPMRDR WNPYAPMS
Sbjct: 745 KVVTATPIHDGMRTPMRDRAWNPYAPMS 772

BLAST of MELO3C029649.2 vs. NCBI nr
Match: XP_002305464.2 (putative transcription elongation factor SPT5 homolog 1 [Populus trichocarpa] >XP_024454835.1 putative transcription elongation factor SPT5 homolog 1 [Populus trichocarpa] >PNT41570.1 hypothetical protein POPTR_004G162500v3 [Populus trichocarpa])

HSP 1 Score: 54.7 bits (130), Expect = 5.9e-04
Identity = 23/26 (88.46%), Postives = 23/26 (88.46%), Query Frame = 0

Query: 196 ATPIHDDMRTPMRDRVWNPYAPMSLL 222
           ATPIHD MRTPMRDR WNPYAPMS L
Sbjct: 805 ATPIHDGMRTPMRDRAWNPYAPMSPL 830

BLAST of MELO3C029649.2 vs. NCBI nr
Match: XP_002265283.2 (PREDICTED: putative transcription elongation factor SPT5 homolog 1 [Vitis vinifera] >CBI19960.3 unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 54.7 bits (130), Expect = 5.9e-04
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 0

Query: 196 ATPIHDDMRTPMRDRVWNPYAPMS 220
           ATPIHD MRTPMRDR WNPYAPMS
Sbjct: 789 ATPIHDGMRTPMRDRAWNPYAPMS 812

BLAST of MELO3C029649.2 vs. NCBI nr
Match: KJB59371.1 (hypothetical protein B456_009G252200 [Gossypium raimondii] >KJB59373.1 hypothetical protein B456_009G252200 [Gossypium raimondii])

HSP 1 Score: 54.7 bits (130), Expect = 5.9e-04
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 0

Query: 196 ATPIHDDMRTPMRDRVWNPYAPMS 220
           ATPIHD MRTPMRDR WNPYAPMS
Sbjct: 532 ATPIHDGMRTPMRDRAWNPYAPMS 555

BLAST of MELO3C029649.2 vs. NCBI nr
Match: KJB59372.1 (hypothetical protein B456_009G252200 [Gossypium raimondii])

HSP 1 Score: 54.7 bits (130), Expect = 5.9e-04
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 0

Query: 196 ATPIHDDMRTPMRDRVWNPYAPMS 220
           ATPIHD MRTPMRDR WNPYAPMS
Sbjct: 784 ATPIHDGMRTPMRDRAWNPYAPMS 807

BLAST of MELO3C029649.2 vs. TrEMBL
Match: tr|A0A251MRD7|A0A251MRD7_PRUPE (Transcription elongation factor SPT5 OS=Prunus persica OX=3760 GN=PRUPE_8G018000 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.3e-04
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 0

Query: 192 QLLIATPIHDDMRTPMRDRVWNPYAPMS 220
           +++ ATPIHD MRTPMRDR WNPYAPMS
Sbjct: 745 KVVTATPIHDGMRTPMRDRAWNPYAPMS 772

BLAST of MELO3C029649.2 vs. TrEMBL
Match: tr|A0A1U8K7B9|A0A1U8K7B9_GOSHI (Transcription elongation factor SPT5 OS=Gossypium hirsutum OX=3635 GN=LOC107914125 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.9e-04
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 0

Query: 196 ATPIHDDMRTPMRDRVWNPYAPMS 220
           ATPIHD MRTPMRDR WNPYAPMS
Sbjct: 807 ATPIHDGMRTPMRDRAWNPYAPMS 830

BLAST of MELO3C029649.2 vs. TrEMBL
Match: tr|A0A0D2TV81|A0A0D2TV81_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G252200 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.9e-04
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 0

Query: 196 ATPIHDDMRTPMRDRVWNPYAPMS 220
           ATPIHD MRTPMRDR WNPYAPMS
Sbjct: 532 ATPIHDGMRTPMRDRAWNPYAPMS 555

BLAST of MELO3C029649.2 vs. TrEMBL
Match: tr|E0CQN1|E0CQN1_VITVI (Transcription elongation factor SPT5 OS=Vitis vinifera OX=29760 GN=VIT_18s0001g15400 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.9e-04
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 0

Query: 196 ATPIHDDMRTPMRDRVWNPYAPMS 220
           ATPIHD MRTPMRDR WNPYAPMS
Sbjct: 789 ATPIHDGMRTPMRDRAWNPYAPMS 812

BLAST of MELO3C029649.2 vs. TrEMBL
Match: tr|A5BMK7|A5BMK7_VITVI (Transcription elongation factor SPT5 OS=Vitis vinifera OX=29760 GN=VITISV_043874 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.9e-04
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 0

Query: 196 ATPIHDDMRTPMRDRVWNPYAPMS 220
           ATPIHD MRTPMRDR WNPYAPMS
Sbjct: 798 ATPIHDGMRTPMRDRAWNPYAPMS 821

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ONH89815.13.4e-0478.57hypothetical protein PRUPE_8G018000 [Prunus persica][more]
XP_002305464.25.9e-0488.46putative transcription elongation factor SPT5 homolog 1 [Populus trichocarpa] >X... [more]
XP_002265283.25.9e-0491.67PREDICTED: putative transcription elongation factor SPT5 homolog 1 [Vitis vinife... [more]
KJB59371.15.9e-0491.67hypothetical protein B456_009G252200 [Gossypium raimondii] >KJB59373.1 hypotheti... [more]
KJB59372.15.9e-0491.67hypothetical protein B456_009G252200 [Gossypium raimondii][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A251MRD7|A0A251MRD7_PRUPE2.3e-0478.57Transcription elongation factor SPT5 OS=Prunus persica OX=3760 GN=PRUPE_8G018000... [more]
tr|A0A1U8K7B9|A0A1U8K7B9_GOSHI3.9e-0491.67Transcription elongation factor SPT5 OS=Gossypium hirsutum OX=3635 GN=LOC1079141... [more]
tr|A0A0D2TV81|A0A0D2TV81_GOSRA3.9e-0491.67Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G252200 PE=4 ... [more]
tr|E0CQN1|E0CQN1_VITVI3.9e-0491.67Transcription elongation factor SPT5 OS=Vitis vinifera OX=29760 GN=VIT_18s0001g1... [more]
tr|A5BMK7|A5BMK7_VITVI3.9e-0491.67Transcription elongation factor SPT5 OS=Vitis vinifera OX=29760 GN=VITISV_043874... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029649.2.1MELO3C029649.2.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C029649.2Cucumber (Gy14) v2cgybmedB045
MELO3C029649.2Cucumber (Gy14) v2cgybmedB092
MELO3C029649.2Cucumber (Gy14) v2cgybmedB162
MELO3C029649.2Cucumber (Gy14) v1cgymedB010
MELO3C029649.2Cucumber (Gy14) v1cgymedB210
MELO3C029649.2Cucumber (Gy14) v1cgymedB511
MELO3C029649.2Cucurbita maxima (Rimu)cmamedB023
MELO3C029649.2Cucurbita maxima (Rimu)cmamedB060
MELO3C029649.2Cucurbita maxima (Rimu)cmamedB112
MELO3C029649.2Cucurbita maxima (Rimu)cmamedB469
MELO3C029649.2Cucurbita maxima (Rimu)cmamedB811
MELO3C029649.2Cucurbita moschata (Rifu)cmomedB011
MELO3C029649.2Cucurbita moschata (Rifu)cmomedB052
MELO3C029649.2Cucurbita moschata (Rifu)cmomedB105
MELO3C029649.2Cucurbita moschata (Rifu)cmomedB806
MELO3C029649.2Cucurbita pepo (Zucchini)cpemedB104
MELO3C029649.2Cucurbita pepo (Zucchini)cpemedB392
MELO3C029649.2Cucurbita pepo (Zucchini)cpemedB604
MELO3C029649.2Cucurbita pepo (Zucchini)cpemedB734
MELO3C029649.2Cucurbita pepo (Zucchini)cpemedB851
MELO3C029649.2Wild cucumber (PI 183967)cpimedB042
MELO3C029649.2Wild cucumber (PI 183967)cpimedB105
MELO3C029649.2Wild cucumber (PI 183967)cpimedB181
MELO3C029649.2Cucumber (Chinese Long) v2cumedB038
MELO3C029649.2Cucumber (Chinese Long) v2cumedB182
MELO3C029649.2Melon (DHL92) v3.6.1medmedB102
MELO3C029649.2Melon (DHL92) v3.6.1medmedB113
MELO3C029649.2Bottle gourd (USVL1VR-Ls)lsimedB108
MELO3C029649.2Bottle gourd (USVL1VR-Ls)lsimedB309
MELO3C029649.2Bottle gourd (USVL1VR-Ls)lsimedB425
MELO3C029649.2Watermelon (Charleston Gray)medwcgB221
MELO3C029649.2Watermelon (Charleston Gray)medwcgB242
MELO3C029649.2Watermelon (Charleston Gray)medwcgB249
MELO3C029649.2Watermelon (97103) v1medwmB268
MELO3C029649.2Watermelon (97103) v1medwmB277
MELO3C029649.2Watermelon (97103) v1medwmB288
MELO3C029649.2Silver-seed gourdcarmedB0036
MELO3C029649.2Silver-seed gourdcarmedB0135
MELO3C029649.2Silver-seed gourdcarmedB0636
MELO3C029649.2Silver-seed gourdcarmedB0675
MELO3C029649.2Cucumber (Chinese Long) v3cucmedB052
MELO3C029649.2Cucumber (Chinese Long) v3cucmedB110
MELO3C029649.2Cucumber (Chinese Long) v3cucmedB185
MELO3C029649.2Cucumber (Chinese Long) v3cucmedB279
MELO3C029649.2Watermelon (97103) v2medwmbB225
MELO3C029649.2Watermelon (97103) v2medwmbB242
MELO3C029649.2Watermelon (97103) v2medwmbB251
MELO3C029649.2Wax gourdmedwgoB268
MELO3C029649.2Wax gourdmedwgoB286
MELO3C029649.2Wax gourdmedwgoB290