MELO3C029343.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C029343.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Replication protein A 70 kDa DNA-binding subunit
Location	chr02 : 2408429 .. 2408818 (-)
Sequence length	390

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCGCCCCAAATATCGCCACCACCACCGCTCCGCCTGCCGCAATACTTAGCAAGAAGTTCTTCAACGAAGGCGACACTCCGGATCCGGCAGCCTCGGCAACCTCTGGGATCACCATCGACGCGGCCAGAGCAGCAGCCGTGATTCCAGCAACAGCCTTCTCCTTCAACGACGATCGAACGGCGACGATCCTTCCGTTGGAAATGGGAGCAGCAGCGATGGGCTTGCGGGACTTAAAAGAAGGCAATGGGTTGAAGAAAGCGTCGTTGGAGAGTGGTTTGTGGGTGGCGTGGGTGAATGGTAAGGCCATTGAAACAGCGGAAGTGGAAGCCATTGATGGGATGAAATGGATGGAGGTGAAGGGAATTGAGGATTTTGTGGAAAATTGA

mRNA sequence

ATGACCGCCCCAAATATCGCCACCACCACCGCTCCGCCTGCCGCAATACTTAGCAAGAAGTTCTTCAACGAAGGCGACACTCCGGATCCGGCAGCCTCGGCAACCTCTGGGATCACCATCGACGCGGCCAGAGCAGCAGCCGTGATTCCAGCAACAGCCTTCTCCTTCAACGACGATCGAACGGCGACGATCCTTCCGTTGGAAATGGGAGCAGCAGCGATGGGCTTGCGGGACTTAAAAGAAGGCAATGGGTTGAAGAAAGCGTCGTTGGAGAGTGGTTTGTGGGTGGCGTGGGTGAATGGTAAGGCCATTGAAACAGCGGAAGTGGAAGCCATTGATGGGATGAAATGGATGGAGGTGAAGGGAATTGAGGATTTTGTGGAAAATTGA

Coding sequence (CDS)

ATGACCGCCCCAAATATCGCCACCACCACCGCTCCGCCTGCCGCAATACTTAGCAAGAAGTTCTTCAACGAAGGCGACACTCCGGATCCGGCAGCCTCGGCAACCTCTGGGATCACCATCGACGCGGCCAGAGCAGCAGCCGTGATTCCAGCAACAGCCTTCTCCTTCAACGACGATCGAACGGCGACGATCCTTCCGTTGGAAATGGGAGCAGCAGCGATGGGCTTGCGGGACTTAAAAGAAGGCAATGGGTTGAAGAAAGCGTCGTTGGAGAGTGGTTTGTGGGTGGCGTGGGTGAATGGTAAGGCCATTGAAACAGCGGAAGTGGAAGCCATTGATGGGATGAAATGGATGGAGGTGAAGGGAATTGAGGATTTTGTGGAAAATTGA

Protein sequence

MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDRTATILPLEMGAAAMGLRDLKEGNGLKKASLESGLWVAWVNGKAIETAEVEAIDGMKWMEVKGIEDFVEN

Homology

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BLAST of MELO3C029343.2.1 vs. NCBI nr
Match: OWM77286.1 (hypothetical protein CDL15_Pgr028923 [Punica granatum])

HSP 1 Score: 89.0 bits (219), Expect = 1.3e-14
Identity = 64/116 (55.17%), Postives = 72/116 (62.07%), Query Frame = 0


Query: 1   MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDR 60
           +TAP I      PA IL +KF  EGDTPDPAASATSGITI+A RAAAV P  AFS  +  
Sbjct: 173 ITAPTIXXXXXXPATILRRKFLREGDTPDPAASATSGITIEAVRAAAVSPVMAFSLREAL 232

Query: 61  TATILPLEMGAAAMGL-RDLKEGNGLKKASLESGLWV---AWVNGKAIETAEVEAI 113
           T+   P +  A   GL  D   G+GLKK S  +G      A VNG AIETAEVEAI
Sbjct: 233 TSN-FPPDFDAPTKGLFFDSLAGSGLKKHS--AGFLCAEEAVVNGIAIETAEVEAI 285

[Close]

BLAST of MELO3C029343.2.1 vs. NCBI nr
Match: PON95950.1 (hypothetical protein TorRG33x02_081980 [Trema orientalis])

HSP 1 Score: 89.0 bits (219), Expect = 1.3e-14
Identity = 51/89 (57.30%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 1  MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDR 60
          MTAP +A +T PPA +LSKKF +EG+TP PAASATSGITIDA  AAAV P TAFS  ++ 
Sbjct: 1  MTAPTMAVSTTPPATMLSKKFLSEGETPGPAASATSGITIDAVNAAAVRPVTAFSLREEA 60

Query: 61 TATILPLEMGAAAMGLRDLKEGNGLKKAS 90
                 ++G A+  L D   G GLKKAS
Sbjct: 61 CTCRWAFDLGLASSTLFDGLIGMGLKKAS 89

[Close]

BLAST of MELO3C029343.2.1 vs. NCBI nr
Match: PON46339.1 (hypothetical protein PanWU01x14_252260 [Parasponia andersonii])

HSP 1 Score: 79.7 bits (195), Expect = 7.9e-12
Identity = 48/89 (53.93%), Postives = 57/89 (64.04%), Query Frame = 0


Query: 1  MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDR 60
          MTAP +A +T PPA +LSKKF  EG+TP  AASATSGITIDA  AAAV P  AF   ++ 
Sbjct: 1  MTAPTMAVSTTPPATMLSKKFLIEGETPGTAASATSGITIDAVNAAAVRPVAAFFLREEA 60

Query: 61 TATILPLEMGAAAMGLRDLKEGNGLKKAS 90
                 ++G A+  L D   G GLKKAS
Sbjct: 61 CTCRWDFDLGLASPTLFDGLIGMGLKKAS 89

[Close]

BLAST of MELO3C029343.2.1 vs. NCBI nr
Match: CAN70428.1 (hypothetical protein VITISV_037530 [Vitis vinifera])

HSP 1 Score: 75.5 bits (184), Expect = 1.5e-10
Identity = 53/114 (46.49%), Postives = 69/114 (60.53%), Query Frame = 0


Query: 1   MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDR 60
           +TAP IA  T PPA +LS+KF  +G+ P+ AASA SG T++A  AAAV P  AFS  +  
Sbjct: 277 ITAPTIAPRTTPPATMLSRKFLRDGEXPE-AASAASGSTMEAVNAAAVRPVXAFSLREAF 336

Query: 61  TATILPLEMGAAAMGLRDLKEGNGLKKASLESGLW-----VAWVNGKAIETAEV 110
           T++ LPL+ G  A    D    +G KKAS E GLW     +A V+  AIET  +
Sbjct: 337 TSSRLPLDFGFTATAFFDGFTCSGWKKAS-EVGLWSSLFXLAEVSRIAIETLAI 388

[Close]

BLAST of MELO3C029343.2.1 vs. NCBI nr
Match: KZM87615.1 (hypothetical protein DCAR_031937 [Daucus carota subsp. sativus])

HSP 1 Score: 64.3 bits (155), Expect = 3.4e-07
Identity = 49/98 (50.00%), Postives = 59/98 (60.20%), Query Frame = 0


Query: 16  ILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDRTATILPLEMGAAAMG 75
           +LS+KF ++GDTP+ AASATSG TI+A  AAAV P  AFS  +   A    L     A  
Sbjct: 1   MLSRKFLSDGDTPE-AASATSGTTIEAVSAAAVNPVIAFSLKE---ALTFRLTAAFDATN 60

Query: 76  LRDLKEGNGLKKAS-LESGLWVAWVNGKAIETAEVEAI 113
             +   GNGLKK S L   LW+A V G A+E A VEAI
Sbjct: 61  AFEGLTGNGLKKVSELGIFLWLAEVIGIAMEIALVEAI 94

[Close]

BLAST of MELO3C029343.2.1 vs. TrEMBL
Match: tr|A0A2P5FDT3|A0A2P5FDT3_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_081980 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 8.6e-15
Identity = 51/89 (57.30%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 1  MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDR 60
          MTAP +A +T PPA +LSKKF +EG+TP PAASATSGITIDA  AAAV P TAFS  ++ 
Sbjct: 1  MTAPTMAVSTTPPATMLSKKFLSEGETPGPAASATSGITIDAVNAAAVRPVTAFSLREEA 60

Query: 61 TATILPLEMGAAAMGLRDLKEGNGLKKAS 90
                 ++G A+  L D   G GLKKAS
Sbjct: 61 CTCRWAFDLGLASSTLFDGLIGMGLKKAS 89

[Close]

BLAST of MELO3C029343.2.1 vs. TrEMBL
Match: tr|A0A218WXK4|A0A218WXK4_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr028923 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 8.6e-15
Identity = 64/116 (55.17%), Postives = 72/116 (62.07%), Query Frame = 0


Query: 1   MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDR 60
           +TAP I      PA IL +KF  EGDTPDPAASATSGITI+A RAAAV P  AFS  +  
Sbjct: 173 ITAPTIXXXXXXPATILRRKFLREGDTPDPAASATSGITIEAVRAAAVSPVMAFSLREAL 232

Query: 61  TATILPLEMGAAAMGL-RDLKEGNGLKKASLESGLWV---AWVNGKAIETAEVEAI 113
           T+   P +  A   GL  D   G+GLKK S  +G      A VNG AIETAEVEAI
Sbjct: 233 TSN-FPPDFDAPTKGLFFDSLAGSGLKKHS--AGFLCAEEAVVNGIAIETAEVEAI 285

[Close]

BLAST of MELO3C029343.2.1 vs. TrEMBL
Match: tr|A0A2P5BC30|A0A2P5BC30_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_252260 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.2e-12
Identity = 48/89 (53.93%), Postives = 57/89 (64.04%), Query Frame = 0


Query: 1  MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDR 60
          MTAP +A +T PPA +LSKKF  EG+TP  AASATSGITIDA  AAAV P  AF   ++ 
Sbjct: 1  MTAPTMAVSTTPPATMLSKKFLIEGETPGTAASATSGITIDAVNAAAVRPVAAFFLREEA 60

Query: 61 TATILPLEMGAAAMGLRDLKEGNGLKKAS 90
                 ++G A+  L D   G GLKKAS
Sbjct: 61 CTCRWDFDLGLASPTLFDGLIGMGLKKAS 89

[Close]

BLAST of MELO3C029343.2.1 vs. TrEMBL
Match: tr|M5X9U8|M5X9U8_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppb011302mg PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.8e-11
Identity = 51/107 (47.66%), Postives = 64/107 (59.81%), Query Frame = 0


Query: 6   IATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDRTATIL 65
           +A +T PPAA+LSKK   EG  P+PAASATSGIT++A  AAAV P TAFS  D  T + +
Sbjct: 1   MAVSTTPPAAMLSKKLLREGVRPEPAASATSGITMEAVNAAAVKPVTAFSLKDASTLS-M 60

Query: 66  PLEMGAAAMGLRDLKEGNGLKK-ASLE--SGLWVAWVNGKAIETAEV 110
           PL+ G       D   G  L   A L+  S  WVA ++G AIE   +
Sbjct: 61  PLDFGFTKAAFFDGLTGTDLNSDAELDWFSPFWVADISGIAIEAEAI 106

[Close]

BLAST of MELO3C029343.2.1 vs. TrEMBL
Match: tr|A5BQH5|A5BQH5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_037530 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 9.9e-11
Identity = 53/114 (46.49%), Postives = 69/114 (60.53%), Query Frame = 0


Query: 1   MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDR 60
           +TAP IA  T PPA +LS+KF  +G+ P+ AASA SG T++A  AAAV P  AFS  +  
Sbjct: 277 ITAPTIAPRTTPPATMLSRKFLRDGEXPE-AASAASGSTMEAVNAAAVRPVXAFSLREAF 336

Query: 61  TATILPLEMGAAAMGLRDLKEGNGLKKASLESGLW-----VAWVNGKAIETAEV 110
           T++ LPL+ G  A    D    +G KKAS E GLW     +A V+  AIET  +
Sbjct: 337 TSSRLPLDFGFTATAFFDGFTCSGWKKAS-EVGLWSSLFXLAEVSRIAIETLAI 388

The following BLAST results are available for this feature:

BLAST of MELO3C029343.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
OWM77286.1	1.3e-14	55.17	hypothetical protein CDL15_Pgr028923 [Punica granatum]	[more]
PON95950.1	1.3e-14	57.30	hypothetical protein TorRG33x02_081980 [Trema orientalis]	[more]
PON46339.1	7.9e-12	53.93	hypothetical protein PanWU01x14_252260 [Parasponia andersonii]	[more]
CAN70428.1	1.5e-10	46.49	hypothetical protein VITISV_037530 [Vitis vinifera]	[more]
KZM87615.1	3.4e-07	50.00	hypothetical protein DCAR_031937 [Daucus carota subsp. sativus]	[more]

BLAST of MELO3C029343.2.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C029343.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C029343.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P5FDT3\|A0A2P5FDT3_9ROSA	8.6e-15	57.30	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_081980 PE=4 S...	[more]
tr\|A0A218WXK4\|A0A218WXK4_PUNGR	8.6e-15	55.17	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr028923 PE=4 SV=1	[more]
tr\|A0A2P5BC30\|A0A2P5BC30_PARAD	5.2e-12	53.93	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_252260 PE...	[more]
tr\|M5X9U8\|M5X9U8_PRUPE	5.8e-11	47.66	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppb011302mg PE=4 SV=1	[more]
tr\|A5BQH5\|A5BQH5_VITVI	9.9e-11	46.49	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_037530 PE=3 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006281	DNA repair
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C029343.2	MELO3C029343.2	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C029343.2.1.CDS.1	MELO3C029343.2.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C029343.2.1.exon.1	MELO3C029343.2.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C029343.2.1	MELO3C029343.2.1-protein	polypeptide