MELO3C029343.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C029343.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionReplication protein A 70 kDa DNA-binding subunit
Locationchr02 : 2408429 .. 2408818 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCGCCCCAAATATCGCCACCACCACCGCTCCGCCTGCCGCAATACTTAGCAAGAAGTTCTTCAACGAAGGCGACACTCCGGATCCGGCAGCCTCGGCAACCTCTGGGATCACCATCGACGCGGCCAGAGCAGCAGCCGTGATTCCAGCAACAGCCTTCTCCTTCAACGACGATCGAACGGCGACGATCCTTCCGTTGGAAATGGGAGCAGCAGCGATGGGCTTGCGGGACTTAAAAGAAGGCAATGGGTTGAAGAAAGCGTCGTTGGAGAGTGGTTTGTGGGTGGCGTGGGTGAATGGTAAGGCCATTGAAACAGCGGAAGTGGAAGCCATTGATGGGATGAAATGGATGGAGGTGAAGGGAATTGAGGATTTTGTGGAAAATTGA

mRNA sequence

ATGACCGCCCCAAATATCGCCACCACCACCGCTCCGCCTGCCGCAATACTTAGCAAGAAGTTCTTCAACGAAGGCGACACTCCGGATCCGGCAGCCTCGGCAACCTCTGGGATCACCATCGACGCGGCCAGAGCAGCAGCCGTGATTCCAGCAACAGCCTTCTCCTTCAACGACGATCGAACGGCGACGATCCTTCCGTTGGAAATGGGAGCAGCAGCGATGGGCTTGCGGGACTTAAAAGAAGGCAATGGGTTGAAGAAAGCGTCGTTGGAGAGTGGTTTGTGGGTGGCGTGGGTGAATGGTAAGGCCATTGAAACAGCGGAAGTGGAAGCCATTGATGGGATGAAATGGATGGAGGTGAAGGGAATTGAGGATTTTGTGGAAAATTGA

Coding sequence (CDS)

ATGACCGCCCCAAATATCGCCACCACCACCGCTCCGCCTGCCGCAATACTTAGCAAGAAGTTCTTCAACGAAGGCGACACTCCGGATCCGGCAGCCTCGGCAACCTCTGGGATCACCATCGACGCGGCCAGAGCAGCAGCCGTGATTCCAGCAACAGCCTTCTCCTTCAACGACGATCGAACGGCGACGATCCTTCCGTTGGAAATGGGAGCAGCAGCGATGGGCTTGCGGGACTTAAAAGAAGGCAATGGGTTGAAGAAAGCGTCGTTGGAGAGTGGTTTGTGGGTGGCGTGGGTGAATGGTAAGGCCATTGAAACAGCGGAAGTGGAAGCCATTGATGGGATGAAATGGATGGAGGTGAAGGGAATTGAGGATTTTGTGGAAAATTGA

Protein sequence

MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDRTATILPLEMGAAAMGLRDLKEGNGLKKASLESGLWVAWVNGKAIETAEVEAIDGMKWMEVKGIEDFVEN
Homology
[Close]
BLAST of MELO3C029343.2 vs. NCBI nr
Match: OWM77286.1 (hypothetical protein CDL15_Pgr028923 [Punica granatum])

HSP 1 Score: 89.0 bits (219), Expect = 1.3e-14
Identity = 64/116 (55.17%), Postives = 72/116 (62.07%), Query Frame = 0 

Query: 1   MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDR 60
           +TAP I      PA IL +KF  EGDTPDPAASATSGITI+A RAAAV P  AFS  +  
Sbjct: 173 ITAPTIXXXXXXPATILRRKFLREGDTPDPAASATSGITIEAVRAAAVSPVMAFSLREAL 232

Query: 61  TATILPLEMGAAAMGL-RDLKEGNGLKKASLESGLWV---AWVNGKAIETAEVEAI 113
           T+   P +  A   GL  D   G+GLKK S  +G      A VNG AIETAEVEAI
Sbjct: 233 TSN-FPPDFDAPTKGLFFDSLAGSGLKKHS--AGFLCAEEAVVNGIAIETAEVEAI 285

[Close]
BLAST of MELO3C029343.2 vs. NCBI nr
Match: PON95950.1 (hypothetical protein TorRG33x02_081980 [Trema orientalis])

HSP 1 Score: 89.0 bits (219), Expect = 1.3e-14
Identity = 51/89 (57.30%), Postives = 61/89 (68.54%), Query Frame = 0 

Query: 1  MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDR 60
          MTAP +A +T PPA +LSKKF +EG+TP PAASATSGITIDA  AAAV P TAFS  ++ 
Sbjct: 1  MTAPTMAVSTTPPATMLSKKFLSEGETPGPAASATSGITIDAVNAAAVRPVTAFSLREEA 60

Query: 61 TATILPLEMGAAAMGLRDLKEGNGLKKAS 90
                 ++G A+  L D   G GLKKAS
Sbjct: 61 CTCRWAFDLGLASSTLFDGLIGMGLKKAS 89

[Close]
BLAST of MELO3C029343.2 vs. NCBI nr
Match: PON46339.1 (hypothetical protein PanWU01x14_252260 [Parasponia andersonii])

HSP 1 Score: 79.7 bits (195), Expect = 7.9e-12
Identity = 48/89 (53.93%), Postives = 57/89 (64.04%), Query Frame = 0 

Query: 1  MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDR 60
          MTAP +A +T PPA +LSKKF  EG+TP  AASATSGITIDA  AAAV P  AF   ++ 
Sbjct: 1  MTAPTMAVSTTPPATMLSKKFLIEGETPGTAASATSGITIDAVNAAAVRPVAAFFLREEA 60

Query: 61 TATILPLEMGAAAMGLRDLKEGNGLKKAS 90
                 ++G A+  L D   G GLKKAS
Sbjct: 61 CTCRWDFDLGLASPTLFDGLIGMGLKKAS 89

[Close]
BLAST of MELO3C029343.2 vs. NCBI nr
Match: CAN70428.1 (hypothetical protein VITISV_037530 [Vitis vinifera])

HSP 1 Score: 75.5 bits (184), Expect = 1.5e-10
Identity = 53/114 (46.49%), Postives = 69/114 (60.53%), Query Frame = 0 

Query: 1   MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDR 60
           +TAP IA  T PPA +LS+KF  +G+ P+ AASA SG T++A  AAAV P  AFS  +  
Sbjct: 277 ITAPTIAPRTTPPATMLSRKFLRDGEXPE-AASAASGSTMEAVNAAAVRPVXAFSLREAF 336

Query: 61  TATILPLEMGAAAMGLRDLKEGNGLKKASLESGLW-----VAWVNGKAIETAEV 110
           T++ LPL+ G  A    D    +G KKAS E GLW     +A V+  AIET  +
Sbjct: 337 TSSRLPLDFGFTATAFFDGFTCSGWKKAS-EVGLWSSLFXLAEVSRIAIETLAI 388

[Close]
BLAST of MELO3C029343.2 vs. NCBI nr
Match: KZM87615.1 (hypothetical protein DCAR_031937 [Daucus carota subsp. sativus])

HSP 1 Score: 64.3 bits (155), Expect = 3.4e-07
Identity = 49/98 (50.00%), Postives = 59/98 (60.20%), Query Frame = 0 

Query: 16  ILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDRTATILPLEMGAAAMG 75
           +LS+KF ++GDTP+ AASATSG TI+A  AAAV P  AFS  +   A    L     A  
Sbjct: 1   MLSRKFLSDGDTPE-AASATSGTTIEAVSAAAVNPVIAFSLKE---ALTFRLTAAFDATN 60

Query: 76  LRDLKEGNGLKKAS-LESGLWVAWVNGKAIETAEVEAI 113
             +   GNGLKK S L   LW+A V G A+E A VEAI
Sbjct: 61  AFEGLTGNGLKKVSELGIFLWLAEVIGIAMEIALVEAI 94

[Close]
BLAST of MELO3C029343.2 vs. TrEMBL
Match: tr|A0A2P5FDT3|A0A2P5FDT3_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_081980 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 8.6e-15
Identity = 51/89 (57.30%), Postives = 61/89 (68.54%), Query Frame = 0 

Query: 1  MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDR 60
          MTAP +A +T PPA +LSKKF +EG+TP PAASATSGITIDA  AAAV P TAFS  ++ 
Sbjct: 1  MTAPTMAVSTTPPATMLSKKFLSEGETPGPAASATSGITIDAVNAAAVRPVTAFSLREEA 60

Query: 61 TATILPLEMGAAAMGLRDLKEGNGLKKAS 90
                 ++G A+  L D   G GLKKAS
Sbjct: 61 CTCRWAFDLGLASSTLFDGLIGMGLKKAS 89

[Close]
BLAST of MELO3C029343.2 vs. TrEMBL
Match: tr|A0A218WXK4|A0A218WXK4_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr028923 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 8.6e-15
Identity = 64/116 (55.17%), Postives = 72/116 (62.07%), Query Frame = 0 

Query: 1   MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDR 60
           +TAP I      PA IL +KF  EGDTPDPAASATSGITI+A RAAAV P  AFS  +  
Sbjct: 173 ITAPTIXXXXXXPATILRRKFLREGDTPDPAASATSGITIEAVRAAAVSPVMAFSLREAL 232

Query: 61  TATILPLEMGAAAMGL-RDLKEGNGLKKASLESGLWV---AWVNGKAIETAEVEAI 113
           T+   P +  A   GL  D   G+GLKK S  +G      A VNG AIETAEVEAI
Sbjct: 233 TSN-FPPDFDAPTKGLFFDSLAGSGLKKHS--AGFLCAEEAVVNGIAIETAEVEAI 285

[Close]
BLAST of MELO3C029343.2 vs. TrEMBL
Match: tr|A0A2P5BC30|A0A2P5BC30_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_252260 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.2e-12
Identity = 48/89 (53.93%), Postives = 57/89 (64.04%), Query Frame = 0 

Query: 1  MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDR 60
          MTAP +A +T PPA +LSKKF  EG+TP  AASATSGITIDA  AAAV P  AF   ++ 
Sbjct: 1  MTAPTMAVSTTPPATMLSKKFLIEGETPGTAASATSGITIDAVNAAAVRPVAAFFLREEA 60

Query: 61 TATILPLEMGAAAMGLRDLKEGNGLKKAS 90
                 ++G A+  L D   G GLKKAS
Sbjct: 61 CTCRWDFDLGLASPTLFDGLIGMGLKKAS 89

[Close]
BLAST of MELO3C029343.2 vs. TrEMBL
Match: tr|M5X9U8|M5X9U8_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppb011302mg PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.8e-11
Identity = 51/107 (47.66%), Postives = 64/107 (59.81%), Query Frame = 0 

Query: 6   IATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDRTATIL 65
           +A +T PPAA+LSKK   EG  P+PAASATSGIT++A  AAAV P TAFS  D  T + +
Sbjct: 1   MAVSTTPPAAMLSKKLLREGVRPEPAASATSGITMEAVNAAAVKPVTAFSLKDASTLS-M 60

Query: 66  PLEMGAAAMGLRDLKEGNGLKK-ASLE--SGLWVAWVNGKAIETAEV 110
           PL+ G       D   G  L   A L+  S  WVA ++G AIE   +
Sbjct: 61  PLDFGFTKAAFFDGLTGTDLNSDAELDWFSPFWVADISGIAIEAEAI 106

[Close]
BLAST of MELO3C029343.2 vs. TrEMBL
Match: tr|A5BQH5|A5BQH5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_037530 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 9.9e-11
Identity = 53/114 (46.49%), Postives = 69/114 (60.53%), Query Frame = 0 

Query: 1   MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDR 60
           +TAP IA  T PPA +LS+KF  +G+ P+ AASA SG T++A  AAAV P  AFS  +  
Sbjct: 277 ITAPTIAPRTTPPATMLSRKFLRDGEXPE-AASAASGSTMEAVNAAAVRPVXAFSLREAF 336

Query: 61  TATILPLEMGAAAMGLRDLKEGNGLKKASLESGLW-----VAWVNGKAIETAEV 110
           T++ LPL+ G  A    D    +G KKAS E GLW     +A V+  AIET  +
Sbjct: 337 TSSRLPLDFGFTATAFFDGFTCSGWKKAS-EVGLWSSLFXLAEVSRIAIETLAI 388

The following BLAST results are available for this feature:
BLAST of MELO3C029343.2 vs. NCBI nr
Match NameE-valueIdentityDescription
OWM77286.11.3e-1455.17hypothetical protein CDL15_Pgr028923 [Punica granatum][more]
PON95950.11.3e-1457.30hypothetical protein TorRG33x02_081980 [Trema orientalis][more]
PON46339.17.9e-1253.93hypothetical protein PanWU01x14_252260 [Parasponia andersonii][more]
CAN70428.11.5e-1046.49hypothetical protein VITISV_037530 [Vitis vinifera][more]
KZM87615.13.4e-0750.00hypothetical protein DCAR_031937 [Daucus carota subsp. sativus][more]
BLAST of MELO3C029343.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C029343.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C029343.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2P5FDT3|A0A2P5FDT3_9ROSA8.6e-1557.30Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_081980 PE=4 S... [more]
tr|A0A218WXK4|A0A218WXK4_PUNGR8.6e-1555.17Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr028923 PE=4 SV=1[more]
tr|A0A2P5BC30|A0A2P5BC30_PARAD5.2e-1253.93Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_252260 PE... [more]
tr|M5X9U8|M5X9U8_PRUPE5.8e-1147.66Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppb011302mg PE=4 SV=1[more]
tr|A5BQH5|A5BQH5_VITVI9.9e-1146.49Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_037530 PE=3 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006310 DNA recombination
biological_process GO:0006281 DNA repair
biological_process GO:0006260 DNA replication
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029343.2.1MELO3C029343.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C029343.2CmaCh10G007530Cucurbita maxima (Rimu)cmamedB061
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C029343.2Watermelon (97103) v2medwmbB224
MELO3C029343.2Watermelon (97103) v2medwmbB235
MELO3C029343.2Watermelon (97103) v2medwmbB257
MELO3C029343.2Wax gourdmedwgoB271
MELO3C029343.2Wax gourdmedwgoB288
MELO3C029343.2Wax gourdmedwgoB303
MELO3C029343.2Cucumber (Gy14) v2cgybmedB032
MELO3C029343.2Cucumber (Gy14) v2cgybmedB097
MELO3C029343.2Cucumber (Gy14) v2cgybmedB479
MELO3C029343.2Cucumber (Gy14) v1cgymedB169
MELO3C029343.2Cucumber (Gy14) v1cgymedB235
MELO3C029343.2Cucumber (Gy14) v1cgymedB581
MELO3C029343.2Cucurbita maxima (Rimu)cmamedB111
MELO3C029343.2Cucurbita maxima (Rimu)cmamedB383
MELO3C029343.2Cucurbita maxima (Rimu)cmamedB937
MELO3C029343.2Cucurbita moschata (Rifu)cmomedB053
MELO3C029343.2Cucurbita moschata (Rifu)cmomedB104
MELO3C029343.2Cucurbita moschata (Rifu)cmomedB370
MELO3C029343.2Cucurbita moschata (Rifu)cmomedB926
MELO3C029343.2Cucurbita pepo (Zucchini)cpemedB156
MELO3C029343.2Cucurbita pepo (Zucchini)cpemedB353
MELO3C029343.2Cucurbita pepo (Zucchini)cpemedB393
MELO3C029343.2Cucurbita pepo (Zucchini)cpemedB733
MELO3C029343.2Wild cucumber (PI 183967)cpimedB036
MELO3C029343.2Wild cucumber (PI 183967)cpimedB110
MELO3C029343.2Wild cucumber (PI 183967)cpimedB538
MELO3C029343.2Cucumber (Chinese Long) v2cumedB033
MELO3C029343.2Cucumber (Chinese Long) v2cumedB110
MELO3C029343.2Cucumber (Chinese Long) v2cumedB524
MELO3C029343.2Melon (DHL92) v3.6.1medmedB078
MELO3C029343.2Melon (DHL92) v3.6.1medmedB107
MELO3C029343.2Bottle gourd (USVL1VR-Ls)lsimedB109
MELO3C029343.2Bottle gourd (USVL1VR-Ls)lsimedB217
MELO3C029343.2Bottle gourd (USVL1VR-Ls)lsimedB310
MELO3C029343.2Bottle gourd (USVL1VR-Ls)lsimedB418
MELO3C029343.2Watermelon (Charleston Gray)medwcgB237
MELO3C029343.2Watermelon (Charleston Gray)medwcgB217
MELO3C029343.2Watermelon (Charleston Gray)medwcgB225
MELO3C029343.2Watermelon (97103) v1medwmB250
MELO3C029343.2Watermelon (97103) v1medwmB262
MELO3C029343.2Watermelon (97103) v1medwmB279
MELO3C029343.2Silver-seed gourdcarmedB0098
MELO3C029343.2Silver-seed gourdcarmedB0580
MELO3C029343.2Silver-seed gourdcarmedB0611
MELO3C029343.2Silver-seed gourdcarmedB0882
MELO3C029343.2Cucumber (Chinese Long) v3cucmedB039
MELO3C029343.2Cucumber (Chinese Long) v3cucmedB109
MELO3C029343.2Cucumber (Chinese Long) v3cucmedB552