MELO3C029115.2.1 (mRNA) Melon (DHL92) v3.6.1

Overview
NameMELO3C029115.2.1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionMyb/SANT-like DNA-binding domain protein
Locationchr01 : 23718427 .. 23719060 (+)
Sequence length507
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACATTTACTTAACAATTTTGCAATCAGTACTCATACGTGATATTTTTTTTCCCCGCAGTCGCATCCTGTAGCGAAGGGACTCCTGAACAAACCATTCGCGTATTACAACGAACTTACATATGTCTTCGGTCGCGATAGGGCGACCAGTCGGTTCGCTGAGACATTCGCGGACGTCGGGTCTAACGAGCCTGGTGGCGGATATGACAGATTTGATATGGGGGATGGAAATGAAGAGTTCCCGCTCGTGTACAGCCAGAGGATTGACCTCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGAACGAATTGAGTGGATCCAAGAGGAAGAGGGGAAGTCAGCGAGATTTCGATGTTGAAGCGATACATCTGACGCTCGACCAAACAAACGAGCAACTCAGGTAGATTGCGGAGTGGCCTGCACGCAACCTTGCAAATGACAACCATGTGCGCACGGAATTCTTCGTGAGATGCCAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTTCAGGGTTTCGTACTCATGCCTGAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACGAGACATTATAAGATAG

mRNA sequence

ATGTACATTTACTTAACAATTTTGCAATCATCGCATCCTGTAGCGAAGGGACTCCTGAACAAACCATTCGCGTATTACAACGAACTTACATATGTCTTCGGTCGCGATAGGGCGACCAGTCGGTTCGCTGAGACATTCGCGGACGTCGGGTCTAACGAGCCTGGTGGCGGATATGACAGATTTGATATGGGGGATGGAAATGAAGAGTTCCCGCTCGTGTACAGCCAGAGGATTGACCTCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGAACGAATTGAGTGGATCCAAGAGGAAGAGGGGAAGTCAGCGAGATTTCGATGTTGAAGCGATACATCTGACGCTCGACCAAACAAACGAGCAACTCAGGGCGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTTCAGGGTTTCGTACTCATGCCTGAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACGAGACATTATAAGATAG

Coding sequence (CDS)

ATGTACATTTACTTAACAATTTTGCAATCATCGCATCCTGTAGCGAAGGGACTCCTGAACAAACCATTCGCGTATTACAACGAACTTACATATGTCTTCGGTCGCGATAGGGCGACCAGTCGGTTCGCTGAGACATTCGCGGACGTCGGGTCTAACGAGCCTGGTGGCGGATATGACAGATTTGATATGGGGGATGGAAATGAAGAGTTCCCGCTCGTGTACAGCCAGAGGATTGACCTCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGAACGAATTGAGTGGATCCAAGAGGAAGAGGGGAAGTCAGCGAGATTTCGATGTTGAAGCGATACATCTGACGCTCGACCAAACAAACGAGCAACTCAGGGCGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTTCAGGGTTTCGTACTCATGCCTGAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACGAGACATTATAAGATAG

Protein sequence

MYIYLTILQSSHPVAKGLLNKPFAYYNELTYVFGRDRATSRFAETFADVGSNEPGGGYDRFDMGDGNEEFPLVYSQRIDLSQDDVRASRPSRASEGRNELSGSKRKRGSQRDFDVEAIHLTLDQTNEQLRALLQRHLLSRMDDLQGFVLMPEDEREGFCRVLLRDIIR
Homology
[Close]
BLAST of MELO3C029115.2.1 vs. NCBI nr
Match: ADN33754.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 237.7 bits (605), Expect = 3.0e-59
Identity = 129/193 (66.84%), Postives = 135/193 (69.95%), Query Frame = 0 

Query: 11  SHPVAKGLLNKPFAYYNELTYVFGRDRATSRFAETFADVGSNEPGGGYDRFDMGDGNEEF 70
           S P AKGLLN PF YY+ELTYVFGRDRAT RFAETFADVGSNEPGGGYDRFDMGDGNE+F
Sbjct: 431 SPPAAKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDF 490

Query: 71  PLVYSQRIDLSQDDVRASRPSRASEGRNELSGSKRKRGSQRDFDVEAIHLTLDQTNEQL- 130
           P VYS+ +D+ QDDVRASRPS             RKRGSQRDFDVEAIHL LDQTNEQL 
Sbjct: 491 PPVYSRGVDILQDDVRASRPSXXXXXXXXXXXXXRKRGSQRDFDVEAIHLALDQTNEQLR 550

Query: 131 ----------------------------------RALLQRHLLSRMDDLQGFVLMPEDER 169
                                             RALLQRHLLSRMDDL+GFVLMPEDER
Sbjct: 551 QIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDER 610

[Close]
BLAST of MELO3C029115.2.1 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo])

HSP 1 Score: 112.1 bits (279), Expect = 1.9e-21
Identity = 70/193 (36.27%), Postives = 105/193 (54.40%), Query Frame = 0 

Query: 11  SHPVAKGLLNKPFAYYNELTYVFGRDRATSRFAETFADVGSNEPGGGYDRFDMGDG-NEE 70
           SHP AKGLL+K F YY++L+YVFG+DRAT   +ETF +VGSN      D   +GD  +E+
Sbjct: 114 SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDED 173

Query: 71  FPLVYSQRIDLSQDDVRASRPSRASEGRNELSGSKRKRGSQRDFDVEAIHLTLDQTNEQL 130
            P +YSQ + +S D++   R  +ASE RN  S SKRKRGS+R   VE I   ++  NEQL
Sbjct: 174 IPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQL 233

Query: 131 RAL-----------------------------------LQRHLLSRMDDLQGFVLMPEDE 168
           +A+                                   L + L   ++ ++GF+ +P + 
Sbjct: 234 KAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTEL 293

[Close]
BLAST of MELO3C029115.2.1 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 110.2 bits (274), Expect = 7.1e-21
Identity = 62/139 (44.60%), Postives = 86/139 (61.87%), Query Frame = 0 

Query: 11  SHPVAKGLLNKPFAYYNELTYVFGRDRATSRFAETFADVGSNEPGGGYDRFDMGDG---- 70
           SHP AKGLLNK F +Y+EL+YVFG+DRAT   AE+FAD+GSN+P G    +D G      
Sbjct: 466 SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPG----YDAGAADAMP 525

Query: 71  NEEFPLVYSQRIDLSQDDVRASRPSRASEGRNELSGSKRKRGSQRDFDVEAIHLTLDQTN 130
           + +FP +YS  +++S DD+  +R +R SE RN  SGSKRKR        + +   ++  N
Sbjct: 526 DTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGN 585

Query: 131 EQLRALLQRHLLSRMDDLQ 146
           EQL  + +  +L R D  Q
Sbjct: 586 EQLHRIAEWPILQRQDATQ 600

[Close]
BLAST of MELO3C029115.2.1 vs. NCBI nr
Match: XP_008444620.1 (PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo])

HSP 1 Score: 105.9 bits (263), Expect = 1.3e-19
Identity = 56/95 (58.95%), Postives = 67/95 (70.53%), Query Frame = 0 

Query: 12  HPVAKGLLNKPFAYYNELTYVFGRDRATSRFAETFADVGSNEPGGGYDRFDMGDGNE-EF 71
           HPVAK LLNK F YY+EL YVF +DRAT R  ETF D+GSN+P   Y+ F   DGN+ E 
Sbjct: 32  HPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDP-SRYEGFQPPDGNDMEI 91

Query: 72  PLVYSQRIDLSQDDVRASRPSRASEGRNELSGSKR 106
           P +YSQ  ++SQ+DV A RPS AS+ R   SGSKR
Sbjct: 92  PTIYSQGFNMSQEDVWAPRPSSASDSRTRSSGSKR 125

[Close]
BLAST of MELO3C029115.2.1 vs. NCBI nr
Match: XP_008459131.1 (PREDICTED: uncharacterized protein LOC103498331 [Cucumis melo])

HSP 1 Score: 105.9 bits (263), Expect = 1.3e-19
Identity = 62/139 (44.60%), Postives = 85/139 (61.15%), Query Frame = 0 

Query: 9   QSSHPVAKGLLNKPFAYYNELTYVFGRDRATSRFAETFADVGSNEPGGGYDRFDMGDG-- 68
           + SHP AKGLLNK F +Y+EL+YVFG+DRAT   AE FAD+GSN+P  GYD F + D   
Sbjct: 100 KESHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAEIFADIGSNDP-AGYDAF-VADAAP 159

Query: 69  NEEFPLVYSQRIDLSQDDVRASRPSRASEGRNELSGSKRKRGSQRDFDVEAIHLTLDQTN 128
           +  F  +YS R+++S DD+  +R +R SE RN  SGS+RK         + +   +   N
Sbjct: 160 DTNFSPMYSPRLNMSPDDLMETRTARVSERRNVSSGSRRKHTGHATDSGDIVCTAIVYGN 219

Query: 129 EQLRALLQRHLLSRMDDLQ 146
           EQL  + +  +L R D  Q
Sbjct: 220 EQLHRIAEWPILQRQDATQ 236

[Close]
BLAST of MELO3C029115.2.1 vs. TrEMBL
Match: tr|E5GBB2|E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 2.0e-59
Identity = 129/193 (66.84%), Postives = 135/193 (69.95%), Query Frame = 0 

Query: 11  SHPVAKGLLNKPFAYYNELTYVFGRDRATSRFAETFADVGSNEPGGGYDRFDMGDGNEEF 70
           S P AKGLLN PF YY+ELTYVFGRDRAT RFAETFADVGSNEPGGGYDRFDMGDGNE+F
Sbjct: 431 SPPAAKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDF 490

Query: 71  PLVYSQRIDLSQDDVRASRPSRASEGRNELSGSKRKRGSQRDFDVEAIHLTLDQTNEQL- 130
           P VYS+ +D+ QDDVRASRPS             RKRGSQRDFDVEAIHL LDQTNEQL 
Sbjct: 491 PPVYSRGVDILQDDVRASRPSXXXXXXXXXXXXXRKRGSQRDFDVEAIHLALDQTNEQLR 550

Query: 131 ----------------------------------RALLQRHLLSRMDDLQGFVLMPEDER 169
                                             RALLQRHLLSRMDDL+GFVLMPEDER
Sbjct: 551 QIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDER 610

[Close]
BLAST of MELO3C029115.2.1 vs. TrEMBL
Match: tr|A0A1S3B4L3|A0A1S3B4L3_CUCME (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.2e-21
Identity = 70/193 (36.27%), Postives = 105/193 (54.40%), Query Frame = 0 

Query: 11  SHPVAKGLLNKPFAYYNELTYVFGRDRATSRFAETFADVGSNEPGGGYDRFDMGDG-NEE 70
           SHP AKGLL+K F YY++L+YVFG+DRAT   +ETF +VGSN      D   +GD  +E+
Sbjct: 114 SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDED 173

Query: 71  FPLVYSQRIDLSQDDVRASRPSRASEGRNELSGSKRKRGSQRDFDVEAIHLTLDQTNEQL 130
            P +YSQ + +S D++   R  +ASE RN  S SKRKRGS+R   VE I   ++  NEQL
Sbjct: 174 IPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQL 233

Query: 131 RAL-----------------------------------LQRHLLSRMDDLQGFVLMPEDE 168
           +A+                                   L + L   ++ ++GF+ +P + 
Sbjct: 234 KAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTEL 293

[Close]
BLAST of MELO3C029115.2.1 vs. TrEMBL
Match: tr|E5GCB5|E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.7e-21
Identity = 62/139 (44.60%), Postives = 86/139 (61.87%), Query Frame = 0 

Query: 11  SHPVAKGLLNKPFAYYNELTYVFGRDRATSRFAETFADVGSNEPGGGYDRFDMGDG---- 70
           SHP AKGLLNK F +Y+EL+YVFG+DRAT   AE+FAD+GSN+P G    +D G      
Sbjct: 466 SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPG----YDAGAADAMP 525

Query: 71  NEEFPLVYSQRIDLSQDDVRASRPSRASEGRNELSGSKRKRGSQRDFDVEAIHLTLDQTN 130
           + +FP +YS  +++S DD+  +R +R SE RN  SGSKRKR        + +   ++  N
Sbjct: 526 DTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGN 585

Query: 131 EQLRALLQRHLLSRMDDLQ 146
           EQL  + +  +L R D  Q
Sbjct: 586 EQLHRIAEWPILQRQDATQ 600

[Close]
BLAST of MELO3C029115.2.1 vs. TrEMBL
Match: tr|A0A1S3BAQ2|A0A1S3BAQ2_CUCME (uncharacterized protein LOC103487886 OS=Cucumis melo OX=3656 GN=LOC103487886 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 8.9e-20
Identity = 56/95 (58.95%), Postives = 67/95 (70.53%), Query Frame = 0 

Query: 12  HPVAKGLLNKPFAYYNELTYVFGRDRATSRFAETFADVGSNEPGGGYDRFDMGDGNE-EF 71
           HPVAK LLNK F YY+EL YVF +DRAT R  ETF D+GSN+P   Y+ F   DGN+ E 
Sbjct: 32  HPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDP-SRYEGFQPPDGNDMEI 91

Query: 72  PLVYSQRIDLSQDDVRASRPSRASEGRNELSGSKR 106
           P +YSQ  ++SQ+DV A RPS AS+ R   SGSKR
Sbjct: 92  PTIYSQGFNMSQEDVWAPRPSSASDSRTRSSGSKR 125

[Close]
BLAST of MELO3C029115.2.1 vs. TrEMBL
Match: tr|A0A1S3C8Z4|A0A1S3C8Z4_CUCME (uncharacterized protein LOC103498331 OS=Cucumis melo OX=3656 GN=LOC103498331 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 8.9e-20
Identity = 62/139 (44.60%), Postives = 85/139 (61.15%), Query Frame = 0 

Query: 9   QSSHPVAKGLLNKPFAYYNELTYVFGRDRATSRFAETFADVGSNEPGGGYDRFDMGDG-- 68
           + SHP AKGLLNK F +Y+EL+YVFG+DRAT   AE FAD+GSN+P  GYD F + D   
Sbjct: 100 KESHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAEIFADIGSNDP-AGYDAF-VADAAP 159

Query: 69  NEEFPLVYSQRIDLSQDDVRASRPSRASEGRNELSGSKRKRGSQRDFDVEAIHLTLDQTN 128
           +  F  +YS R+++S DD+  +R +R SE RN  SGS+RK         + +   +   N
Sbjct: 160 DTNFSPMYSPRLNMSPDDLMETRTARVSERRNVSSGSRRKHTGHATDSGDIVCTAIVYGN 219

Query: 129 EQLRALLQRHLLSRMDDLQ 146
           EQL  + +  +L R D  Q
Sbjct: 220 EQLHRIAEWPILQRQDATQ 236

The following BLAST results are available for this feature:
BLAST of MELO3C029115.2.1 vs. NCBI nr
Match NameE-valueIdentityDescription
ADN33754.13.0e-5966.84retrotransposon protein [Cucumis melo subsp. melo][more]
XP_008441954.11.9e-2136.27PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo][more]
ADN34114.17.1e-2144.60retrotransposon protein [Cucumis melo subsp. melo][more]
XP_008444620.11.3e-1958.95PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo][more]
XP_008459131.11.3e-1944.60PREDICTED: uncharacterized protein LOC103498331 [Cucumis melo][more]
BLAST of MELO3C029115.2.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C029115.2.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C029115.2.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|E5GBB2|E5GBB2_CUCME2.0e-5966.84Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S3B4L3|A0A1S3B4L3_CUCME1.2e-2136.27uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... [more]
tr|E5GCB5|E5GCB5_CUCME4.7e-2144.60Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S3BAQ2|A0A1S3BAQ2_CUCME8.9e-2058.95uncharacterized protein LOC103487886 OS=Cucumis melo OX=3656 GN=LOC103487886 PE=... [more]
tr|A0A1S3C8Z4|A0A1S3C8Z4_CUCME8.9e-2044.60uncharacterized protein LOC103498331 OS=Cucumis melo OX=3656 GN=LOC103498331 PE=... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C029115.2MELO3C029115.2gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C029115.2.1MELO3C029115.2.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C029115.2.1.CDS.1MELO3C029115.2.1.CDS.1CDS
MELO3C029115.2.1.CDS.2MELO3C029115.2.1.CDS.2CDS
MELO3C029115.2.1.CDS.3MELO3C029115.2.1.CDS.3CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C029115.2.1.exon.1MELO3C029115.2.1.exon.1exon
MELO3C029115.2.1.exon.2MELO3C029115.2.1.exon.2exon
MELO3C029115.2.1.exon.3MELO3C029115.2.1.exon.3exon


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 115..135
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..108
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..108