MELO3C029115.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C029115.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionMyb/SANT-like DNA-binding domain protein
Locationchr01 : 23718427 .. 23719060 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACATTTACTTAACAATTTTGCAATCAGTACTCATACGTGATATTTTTTTTCCCCGCAGTCGCATCCTGTAGCGAAGGGACTCCTGAACAAACCATTCGCGTATTACAACGAACTTACATATGTCTTCGGTCGCGATAGGGCGACCAGTCGGTTCGCTGAGACATTCGCGGACGTCGGGTCTAACGAGCCTGGTGGCGGATATGACAGATTTGATATGGGGGATGGAAATGAAGAGTTCCCGCTCGTGTACAGCCAGAGGATTGACCTCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGAACGAATTGAGTGGATCCAAGAGGAAGAGGGGAAGTCAGCGAGATTTCGATGTTGAAGCGATACATCTGACGCTCGACCAAACAAACGAGCAACTCAGGTAGATTGCGGAGTGGCCTGCACGCAACCTTGCAAATGACAACCATGTGCGCACGGAATTCTTCGTGAGATGCCAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTTCAGGGTTTCGTACTCATGCCTGAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACGAGACATTATAAGATAG

mRNA sequence

ATGTACATTTACTTAACAATTTTGCAATCATCGCATCCTGTAGCGAAGGGACTCCTGAACAAACCATTCGCGTATTACAACGAACTTACATATGTCTTCGGTCGCGATAGGGCGACCAGTCGGTTCGCTGAGACATTCGCGGACGTCGGGTCTAACGAGCCTGGTGGCGGATATGACAGATTTGATATGGGGGATGGAAATGAAGAGTTCCCGCTCGTGTACAGCCAGAGGATTGACCTCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGAACGAATTGAGTGGATCCAAGAGGAAGAGGGGAAGTCAGCGAGATTTCGATGTTGAAGCGATACATCTGACGCTCGACCAAACAAACGAGCAACTCAGGGCGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTTCAGGGTTTCGTACTCATGCCTGAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACGAGACATTATAAGATAG

Coding sequence (CDS)

ATGTACATTTACTTAACAATTTTGCAATCATCGCATCCTGTAGCGAAGGGACTCCTGAACAAACCATTCGCGTATTACAACGAACTTACATATGTCTTCGGTCGCGATAGGGCGACCAGTCGGTTCGCTGAGACATTCGCGGACGTCGGGTCTAACGAGCCTGGTGGCGGATATGACAGATTTGATATGGGGGATGGAAATGAAGAGTTCCCGCTCGTGTACAGCCAGAGGATTGACCTCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGAACGAATTGAGTGGATCCAAGAGGAAGAGGGGAAGTCAGCGAGATTTCGATGTTGAAGCGATACATCTGACGCTCGACCAAACAAACGAGCAACTCAGGGCGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTTCAGGGTTTCGTACTCATGCCTGAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACGAGACATTATAAGATAG

Protein sequence

MYIYLTILQSSHPVAKGLLNKPFAYYNELTYVFGRDRATSRFAETFADVGSNEPGGGYDRFDMGDGNEEFPLVYSQRIDLSQDDVRASRPSRASEGRNELSGSKRKRGSQRDFDVEAIHLTLDQTNEQLRALLQRHLLSRMDDLQGFVLMPEDEREGFCRVLLRDIIR
Homology
[Close]
BLAST of MELO3C029115.2 vs. NCBI nr
Match: ADN33754.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 237.7 bits (605), Expect = 3.0e-59
Identity = 129/193 (66.84%), Postives = 135/193 (69.95%), Query Frame = 0 

Query: 11  SHPVAKGLLNKPFAYYNELTYVFGRDRATSRFAETFADVGSNEPGGGYDRFDMGDGNEEF 70
           S P AKGLLN PF YY+ELTYVFGRDRAT RFAETFADVGSNEPGGGYDRFDMGDGNE+F
Sbjct: 431 SPPAAKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDF 490

Query: 71  PLVYSQRIDLSQDDVRASRPSRASEGRNELSGSKRKRGSQRDFDVEAIHLTLDQTNEQL- 130
           P VYS+ +D+ QDDVRASRPS             RKRGSQRDFDVEAIHL LDQTNEQL 
Sbjct: 491 PPVYSRGVDILQDDVRASRPSXXXXXXXXXXXXXRKRGSQRDFDVEAIHLALDQTNEQLR 550

Query: 131 ----------------------------------RALLQRHLLSRMDDLQGFVLMPEDER 169
                                             RALLQRHLLSRMDDL+GFVLMPEDER
Sbjct: 551 QIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDER 610

[Close]
BLAST of MELO3C029115.2 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo])

HSP 1 Score: 112.1 bits (279), Expect = 1.9e-21
Identity = 70/193 (36.27%), Postives = 105/193 (54.40%), Query Frame = 0 

Query: 11  SHPVAKGLLNKPFAYYNELTYVFGRDRATSRFAETFADVGSNEPGGGYDRFDMGDG-NEE 70
           SHP AKGLL+K F YY++L+YVFG+DRAT   +ETF +VGSN      D   +GD  +E+
Sbjct: 114 SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDED 173

Query: 71  FPLVYSQRIDLSQDDVRASRPSRASEGRNELSGSKRKRGSQRDFDVEAIHLTLDQTNEQL 130
            P +YSQ + +S D++   R  +ASE RN  S SKRKRGS+R   VE I   ++  NEQL
Sbjct: 174 IPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQL 233

Query: 131 RAL-----------------------------------LQRHLLSRMDDLQGFVLMPEDE 168
           +A+                                   L + L   ++ ++GF+ +P + 
Sbjct: 234 KAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTEL 293

[Close]
BLAST of MELO3C029115.2 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 110.2 bits (274), Expect = 7.1e-21
Identity = 62/139 (44.60%), Postives = 86/139 (61.87%), Query Frame = 0 

Query: 11  SHPVAKGLLNKPFAYYNELTYVFGRDRATSRFAETFADVGSNEPGGGYDRFDMGDG---- 70
           SHP AKGLLNK F +Y+EL+YVFG+DRAT   AE+FAD+GSN+P G    +D G      
Sbjct: 466 SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPG----YDAGAADAMP 525

Query: 71  NEEFPLVYSQRIDLSQDDVRASRPSRASEGRNELSGSKRKRGSQRDFDVEAIHLTLDQTN 130
           + +FP +YS  +++S DD+  +R +R SE RN  SGSKRKR        + +   ++  N
Sbjct: 526 DTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGN 585

Query: 131 EQLRALLQRHLLSRMDDLQ 146
           EQL  + +  +L R D  Q
Sbjct: 586 EQLHRIAEWPILQRQDATQ 600

[Close]
BLAST of MELO3C029115.2 vs. NCBI nr
Match: XP_008444620.1 (PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo])

HSP 1 Score: 105.9 bits (263), Expect = 1.3e-19
Identity = 56/95 (58.95%), Postives = 67/95 (70.53%), Query Frame = 0 

Query: 12  HPVAKGLLNKPFAYYNELTYVFGRDRATSRFAETFADVGSNEPGGGYDRFDMGDGNE-EF 71
           HPVAK LLNK F YY+EL YVF +DRAT R  ETF D+GSN+P   Y+ F   DGN+ E 
Sbjct: 32  HPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDP-SRYEGFQPPDGNDMEI 91

Query: 72  PLVYSQRIDLSQDDVRASRPSRASEGRNELSGSKR 106
           P +YSQ  ++SQ+DV A RPS AS+ R   SGSKR
Sbjct: 92  PTIYSQGFNMSQEDVWAPRPSSASDSRTRSSGSKR 125

[Close]
BLAST of MELO3C029115.2 vs. NCBI nr
Match: XP_008459131.1 (PREDICTED: uncharacterized protein LOC103498331 [Cucumis melo])

HSP 1 Score: 105.9 bits (263), Expect = 1.3e-19
Identity = 62/139 (44.60%), Postives = 85/139 (61.15%), Query Frame = 0 

Query: 9   QSSHPVAKGLLNKPFAYYNELTYVFGRDRATSRFAETFADVGSNEPGGGYDRFDMGDG-- 68
           + SHP AKGLLNK F +Y+EL+YVFG+DRAT   AE FAD+GSN+P  GYD F + D   
Sbjct: 100 KESHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAEIFADIGSNDP-AGYDAF-VADAAP 159

Query: 69  NEEFPLVYSQRIDLSQDDVRASRPSRASEGRNELSGSKRKRGSQRDFDVEAIHLTLDQTN 128
           +  F  +YS R+++S DD+  +R +R SE RN  SGS+RK         + +   +   N
Sbjct: 160 DTNFSPMYSPRLNMSPDDLMETRTARVSERRNVSSGSRRKHTGHATDSGDIVCTAIVYGN 219

Query: 129 EQLRALLQRHLLSRMDDLQ 146
           EQL  + +  +L R D  Q
Sbjct: 220 EQLHRIAEWPILQRQDATQ 236

[Close]
BLAST of MELO3C029115.2 vs. TrEMBL
Match: tr|E5GBB2|E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 2.0e-59
Identity = 129/193 (66.84%), Postives = 135/193 (69.95%), Query Frame = 0 

Query: 11  SHPVAKGLLNKPFAYYNELTYVFGRDRATSRFAETFADVGSNEPGGGYDRFDMGDGNEEF 70
           S P AKGLLN PF YY+ELTYVFGRDRAT RFAETFADVGSNEPGGGYDRFDMGDGNE+F
Sbjct: 431 SPPAAKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDF 490

Query: 71  PLVYSQRIDLSQDDVRASRPSRASEGRNELSGSKRKRGSQRDFDVEAIHLTLDQTNEQL- 130
           P VYS+ +D+ QDDVRASRPS             RKRGSQRDFDVEAIHL LDQTNEQL 
Sbjct: 491 PPVYSRGVDILQDDVRASRPSXXXXXXXXXXXXXRKRGSQRDFDVEAIHLALDQTNEQLR 550

Query: 131 ----------------------------------RALLQRHLLSRMDDLQGFVLMPEDER 169
                                             RALLQRHLLSRMDDL+GFVLMPEDER
Sbjct: 551 QIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDER 610

[Close]
BLAST of MELO3C029115.2 vs. TrEMBL
Match: tr|A0A1S3B4L3|A0A1S3B4L3_CUCME (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.2e-21
Identity = 70/193 (36.27%), Postives = 105/193 (54.40%), Query Frame = 0 

Query: 11  SHPVAKGLLNKPFAYYNELTYVFGRDRATSRFAETFADVGSNEPGGGYDRFDMGDG-NEE 70
           SHP AKGLL+K F YY++L+YVFG+DRAT   +ETF +VGSN      D   +GD  +E+
Sbjct: 114 SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDED 173

Query: 71  FPLVYSQRIDLSQDDVRASRPSRASEGRNELSGSKRKRGSQRDFDVEAIHLTLDQTNEQL 130
            P +YSQ + +S D++   R  +ASE RN  S SKRKRGS+R   VE I   ++  NEQL
Sbjct: 174 IPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQL 233

Query: 131 RAL-----------------------------------LQRHLLSRMDDLQGFVLMPEDE 168
           +A+                                   L + L   ++ ++GF+ +P + 
Sbjct: 234 KAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTEL 293

[Close]
BLAST of MELO3C029115.2 vs. TrEMBL
Match: tr|E5GCB5|E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.7e-21
Identity = 62/139 (44.60%), Postives = 86/139 (61.87%), Query Frame = 0 

Query: 11  SHPVAKGLLNKPFAYYNELTYVFGRDRATSRFAETFADVGSNEPGGGYDRFDMGDG---- 70
           SHP AKGLLNK F +Y+EL+YVFG+DRAT   AE+FAD+GSN+P G    +D G      
Sbjct: 466 SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPG----YDAGAADAMP 525

Query: 71  NEEFPLVYSQRIDLSQDDVRASRPSRASEGRNELSGSKRKRGSQRDFDVEAIHLTLDQTN 130
           + +FP +YS  +++S DD+  +R +R SE RN  SGSKRKR        + +   ++  N
Sbjct: 526 DTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGN 585

Query: 131 EQLRALLQRHLLSRMDDLQ 146
           EQL  + +  +L R D  Q
Sbjct: 586 EQLHRIAEWPILQRQDATQ 600

[Close]
BLAST of MELO3C029115.2 vs. TrEMBL
Match: tr|A0A1S3BAQ2|A0A1S3BAQ2_CUCME (uncharacterized protein LOC103487886 OS=Cucumis melo OX=3656 GN=LOC103487886 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 8.9e-20
Identity = 56/95 (58.95%), Postives = 67/95 (70.53%), Query Frame = 0 

Query: 12  HPVAKGLLNKPFAYYNELTYVFGRDRATSRFAETFADVGSNEPGGGYDRFDMGDGNE-EF 71
           HPVAK LLNK F YY+EL YVF +DRAT R  ETF D+GSN+P   Y+ F   DGN+ E 
Sbjct: 32  HPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDP-SRYEGFQPPDGNDMEI 91

Query: 72  PLVYSQRIDLSQDDVRASRPSRASEGRNELSGSKR 106
           P +YSQ  ++SQ+DV A RPS AS+ R   SGSKR
Sbjct: 92  PTIYSQGFNMSQEDVWAPRPSSASDSRTRSSGSKR 125

[Close]
BLAST of MELO3C029115.2 vs. TrEMBL
Match: tr|A0A1S3C8Z4|A0A1S3C8Z4_CUCME (uncharacterized protein LOC103498331 OS=Cucumis melo OX=3656 GN=LOC103498331 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 8.9e-20
Identity = 62/139 (44.60%), Postives = 85/139 (61.15%), Query Frame = 0 

Query: 9   QSSHPVAKGLLNKPFAYYNELTYVFGRDRATSRFAETFADVGSNEPGGGYDRFDMGDG-- 68
           + SHP AKGLLNK F +Y+EL+YVFG+DRAT   AE FAD+GSN+P  GYD F + D   
Sbjct: 100 KESHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAEIFADIGSNDP-AGYDAF-VADAAP 159

Query: 69  NEEFPLVYSQRIDLSQDDVRASRPSRASEGRNELSGSKRKRGSQRDFDVEAIHLTLDQTN 128
           +  F  +YS R+++S DD+  +R +R SE RN  SGS+RK         + +   +   N
Sbjct: 160 DTNFSPMYSPRLNMSPDDLMETRTARVSERRNVSSGSRRKHTGHATDSGDIVCTAIVYGN 219

Query: 129 EQLRALLQRHLLSRMDDLQ 146
           EQL  + +  +L R D  Q
Sbjct: 220 EQLHRIAEWPILQRQDATQ 236

The following BLAST results are available for this feature:
BLAST of MELO3C029115.2 vs. NCBI nr
Match NameE-valueIdentityDescription
ADN33754.13.0e-5966.84retrotransposon protein [Cucumis melo subsp. melo][more]
XP_008441954.11.9e-2136.27PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo][more]
ADN34114.17.1e-2144.60retrotransposon protein [Cucumis melo subsp. melo][more]
XP_008444620.11.3e-1958.95PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo][more]
XP_008459131.11.3e-1944.60PREDICTED: uncharacterized protein LOC103498331 [Cucumis melo][more]
BLAST of MELO3C029115.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C029115.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C029115.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|E5GBB2|E5GBB2_CUCME2.0e-5966.84Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S3B4L3|A0A1S3B4L3_CUCME1.2e-2136.27uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... [more]
tr|E5GCB5|E5GCB5_CUCME4.7e-2144.60Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S3BAQ2|A0A1S3BAQ2_CUCME8.9e-2058.95uncharacterized protein LOC103487886 OS=Cucumis melo OX=3656 GN=LOC103487886 PE=... [more]
tr|A0A1S3C8Z4|A0A1S3C8Z4_CUCME8.9e-2044.60uncharacterized protein LOC103498331 OS=Cucumis melo OX=3656 GN=LOC103498331 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029115.2.1MELO3C029115.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 115..135
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..108
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..108

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C029115.2Cucumber (Gy14) v2cgybmedB460
MELO3C029115.2Cucumber (Gy14) v1cgymedB632
MELO3C029115.2Cucurbita maxima (Rimu)cmamedB377
MELO3C029115.2Cucurbita maxima (Rimu)cmamedB926
MELO3C029115.2Cucurbita moschata (Rifu)cmomedB363
MELO3C029115.2Cucurbita moschata (Rifu)cmomedB915
MELO3C029115.2Cucurbita pepo (Zucchini)cpemedB149
MELO3C029115.2Wild cucumber (PI 183967)cpimedB516
MELO3C029115.2Cucumber (Chinese Long) v2cumedB505
MELO3C029115.2Bottle gourd (USVL1VR-Ls)lsimedB199
MELO3C029115.2Silver-seed gourdcarmedB0014
MELO3C029115.2Silver-seed gourdcarmedB0086
MELO3C029115.2Cucumber (Chinese Long) v3cucmedB531